Wall clock time and date at job start Tue Mar 31 2020 05:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.38348 * 127.15885 * 2 1 4 4 C 1.39783 * 126.56229 * 0.03936 * 3 2 1 5 5 H 1.08005 * 119.99560 * 0.02562 * 4 3 2 6 6 C 1.40081 * 120.00220 * 180.02562 * 4 3 2 7 7 N 1.30811 * 119.99623 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99903 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47160 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46958 * 119.99913 * 8 6 4 11 11 H 1.48503 * 109.46851 * 239.99801 * 8 6 4 12 12 N 1.33092 * 106.87716 * 180.02562 * 3 2 1 13 13 N 1.28514 * 109.74691 * 359.97438 * 12 3 2 14 14 C 1.32393 * 110.20061 * 0.02562 * 13 12 3 15 15 S 1.76205 * 126.25643 * 179.97438 * 14 13 12 16 16 C 1.80995 * 99.99991 * 0.02562 * 15 14 13 17 17 C 1.50705 * 109.46705 * 180.02562 * 16 15 14 18 18 O 1.20755 * 120.00560 * 359.97438 * 17 16 15 19 19 C 1.50707 * 119.99645 * 179.97438 * 17 16 15 20 20 C 1.52997 * 115.54925 * 34.41949 * 19 17 16 21 21 C 1.52992 * 117.49738 * 248.74443 * 19 17 16 22 22 C 1.52996 * 117.49424 * 180.08462 * 19 17 16 23 23 H 1.09001 * 109.47442 * 89.99440 * 1 2 3 24 24 H 1.08998 * 109.47226 * 209.99932 * 1 2 3 25 25 H 1.09007 * 109.46812 * 329.99792 * 1 2 3 26 26 H 0.97002 * 119.99556 * 179.97438 * 7 6 4 27 27 H 1.08996 * 109.47342 * 299.99552 * 16 15 14 28 28 H 1.09001 * 109.47212 * 60.00435 * 16 15 14 29 29 H 1.08994 * 109.47512 * 85.57933 * 20 19 17 30 30 H 1.09000 * 109.46756 * 205.58522 * 20 19 17 31 31 H 1.09004 * 109.47064 * 325.57593 * 20 19 17 32 32 H 1.08997 * 117.50177 * 0.02562 * 21 19 17 33 33 H 1.09002 * 117.50048 * 145.02194 * 21 19 17 34 34 H 1.09002 * 117.49739 * 214.97784 * 22 19 17 35 35 H 1.08996 * 117.50479 * 0.02562 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1026 0.0000 4 6 1.9088 2.4444 0.0008 5 1 0.8596 2.7005 0.0019 6 6 2.8769 3.4568 0.0001 7 7 4.1477 3.1465 -0.0007 8 14 2.3532 5.2498 0.0019 9 1 0.8706 5.3325 0.0032 10 1 2.8880 5.9205 1.2141 11 1 2.8849 5.9219 -1.2109 12 7 3.5490 0.6412 -0.0006 13 7 3.5370 -0.6438 -0.0004 14 6 2.2903 -1.0894 -0.0002 15 16 1.7872 -2.7781 -0.0006 16 6 3.4057 -3.5882 -0.0003 17 6 3.2188 -5.0836 -0.0012 18 8 2.1063 -5.5532 -0.0015 19 6 4.4205 -5.9931 -0.0018 20 6 5.6339 -5.4839 0.7787 21 6 4.6868 -6.8110 -1.2671 22 6 4.1647 -7.5016 -0.0047 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 4.8181 3.8476 -0.0015 27 1 3.9608 -3.2914 -0.8902 28 1 3.9604 -3.2916 0.8899 29 1 5.5326 -5.7596 1.8283 30 1 6.5411 -5.9302 0.3716 31 1 5.6923 -4.3988 0.6921 32 1 3.9932 -6.6909 -2.0992 33 1 5.7265 -6.9866 -1.5433 34 1 4.8611 -8.1312 0.5491 35 1 3.1274 -7.8362 -0.0066 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357100856.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:04 Heat of formation + Delta-G solvation = 55.218910 kcal Electronic energy + Delta-G solvation = -18994.779157 eV Core-core repulsion = 15928.311763 eV Total energy + Delta-G solvation = -3066.467394 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.52609 -40.07072 -36.81073 -33.71652 -33.33614 -30.90285 -29.31553 -28.19660 -26.49475 -25.54300 -23.37775 -22.69158 -20.87723 -20.53386 -18.55751 -17.38410 -16.66722 -16.41865 -15.48449 -15.35123 -14.84962 -14.65262 -14.48785 -14.29914 -13.51838 -13.32334 -13.01523 -12.62763 -12.55280 -12.40449 -12.21570 -12.21043 -11.71471 -11.38348 -11.33328 -10.95694 -10.80713 -10.38571 -10.28361 -10.17755 -9.78418 -9.65595 -9.64722 -8.72326 -8.45020 -8.40913 -6.85164 -6.66974 -4.59226 1.77943 1.87372 2.75698 2.89219 3.05583 3.10162 3.33833 3.51872 3.81865 3.86448 4.22606 4.39811 4.41861 4.62466 4.72578 5.06082 5.30500 5.32726 5.38183 5.48848 5.55877 5.59667 5.64901 5.72089 5.72527 5.89094 5.89211 6.02905 6.05216 6.74149 6.87578 7.22268 7.37029 7.47232 7.86586 8.16431 8.68451 8.84090 10.25653 10.60700 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.036442 B = 0.003724 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.156016 B = 7516.369006 C = 8141.808717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.514 5.514 3 C 0.347 3.653 4 C -0.447 4.447 5 H 0.085 0.915 6 C 0.078 3.922 7 N -0.737 5.737 8 Si 0.921 3.079 9 H -0.262 1.262 10 H -0.272 1.272 11 H -0.272 1.272 12 N -0.333 5.333 13 N -0.288 5.288 14 C 0.036 3.964 15 S -0.008 6.008 16 C -0.153 4.153 17 C 0.410 3.590 18 O -0.440 6.440 19 C -0.183 4.183 20 C -0.117 4.117 21 C -0.147 4.147 22 C -0.152 4.152 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.279 0.721 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.342 -13.119 -0.148 13.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.216 5.216 3 C 0.102 3.898 4 C -0.487 4.487 5 H 0.103 0.897 6 C -0.147 4.147 7 N -0.361 5.361 8 Si 0.745 3.255 9 H -0.185 1.185 10 H -0.197 1.197 11 H -0.197 1.197 12 N -0.180 5.180 13 N -0.134 5.134 14 C -0.336 4.336 15 S 0.219 5.781 16 C -0.302 4.302 17 C 0.284 3.716 18 O -0.313 6.313 19 C -0.186 4.186 20 C -0.174 4.174 21 C -0.184 4.184 22 C -0.189 4.189 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.275 -13.803 -0.145 13.807 hybrid contribution -0.328 1.678 -0.009 1.709 sum -0.603 -12.126 -0.154 12.142 Atomic orbital electron populations 1.21509 0.78450 1.02755 1.01707 1.46019 1.06127 1.05254 1.64212 1.21635 0.84729 0.88441 0.94984 1.18155 0.94759 0.86436 1.49370 0.89720 1.25799 0.94338 1.01326 0.93266 1.70019 1.00714 1.34902 1.30429 0.86062 0.79859 0.80960 0.78642 1.18527 1.19721 1.19724 1.75431 1.15311 0.97829 1.29465 1.74512 1.15140 1.07722 1.16058 1.25534 0.91683 0.93178 1.23204 1.84930 1.07133 0.90392 1.95681 1.23910 1.01789 0.95319 1.09147 1.23170 0.88704 0.89527 0.70233 1.90397 1.27011 1.78292 1.35552 1.21928 0.98126 0.93752 1.04785 1.21391 0.94183 1.02513 0.99340 1.23121 1.03017 1.01155 0.91093 1.23066 1.03313 0.91928 1.00598 0.92485 0.91482 0.90299 0.91029 0.85717 0.85692 0.91649 0.91541 0.90630 0.88269 0.87549 0.87888 0.87656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.88 10.88 59.84 0.65 2.54 16 2 N -0.51 -12.59 3.26 -123.18 -0.40 -12.99 16 3 C 0.35 9.71 7.53 -154.82 -1.17 8.55 16 4 C -0.45 -11.85 9.05 -38.31 -0.35 -12.20 16 5 H 0.08 2.04 7.30 -52.48 -0.38 1.66 16 6 C 0.08 1.99 5.50 -17.30 -0.10 1.90 16 7 N -0.74 -20.13 11.94 55.56 0.66 -19.46 16 8 Si 0.92 18.45 29.56 -169.99 -5.03 13.42 16 9 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 10 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 11 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 12 N -0.33 -9.97 10.48 31.26 0.33 -9.64 16 13 N -0.29 -7.82 11.62 30.90 0.36 -7.46 16 14 C 0.04 0.87 8.09 -87.27 -0.71 0.16 16 15 S -0.01 -0.16 20.92 -107.50 -2.25 -2.41 16 16 C -0.15 -2.43 4.75 36.01 0.17 -2.26 16 17 C 0.41 5.78 6.79 -29.03 -0.20 5.58 16 18 O -0.44 -7.25 15.76 6.00 0.09 -7.16 16 19 C -0.18 -1.97 2.58 -155.66 -0.40 -2.37 16 20 C -0.12 -1.09 9.71 37.16 0.36 -0.73 16 21 C -0.15 -1.32 9.88 -26.70 -0.26 -1.59 16 22 C -0.15 -1.41 9.77 -26.70 -0.26 -1.67 16 23 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 24 H 0.07 1.12 7.85 -51.93 -0.41 0.71 16 25 H 0.08 1.38 7.52 -51.93 -0.39 0.98 16 26 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 27 H 0.12 1.98 8.14 -51.92 -0.42 1.56 16 28 H 0.13 1.97 7.33 -51.92 -0.38 1.59 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.51 7.90 -51.93 -0.41 0.10 16 31 H 0.07 0.77 6.52 -51.93 -0.34 0.43 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.11 0.76 8.05 -51.93 -0.42 0.34 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.11 1.08 7.67 -51.93 -0.40 0.68 16 LS Contribution 318.52 15.07 4.80 4.80 Total: -1.00 -33.44 318.52 -8.06 -41.50 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -4.37 Total: 1.49 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -2.25 Total: -2.09 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: 0.95 Total: -49.55 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: 0.09 Total: -7.16 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.25 Total: -2.41 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.44 -8.06 -41.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357100856.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.717 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds