Wall clock time and date at job start Tue Mar 31 2020 05:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00287 * 2 1 4 4 H 1.48498 * 109.47325 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47171 * 299.99719 * 3 2 1 6 6 H 1.48494 * 109.47450 * 59.99884 * 3 2 1 7 7 C 1.37881 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99667 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00201 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47303 * 179.97438 * 9 7 2 11 11 C 1.53079 * 109.44844 * 64.79191 * 10 9 7 12 12 C 1.53191 * 109.29402 * 181.24515 * 11 10 9 13 13 N 1.46928 * 108.89067 * 305.57836 * 12 11 10 14 14 C 1.34782 * 120.63059 * 233.51872 * 13 12 11 15 15 O 1.21624 * 119.99823 * 173.50840 * 14 13 12 16 16 C 1.47173 * 119.99693 * 353.50044 * 14 13 12 17 17 C 1.38245 * 128.46790 * 156.36064 * 16 14 13 18 18 N 1.31247 * 111.88394 * 179.81118 * 17 16 14 19 19 N 1.27334 * 120.03519 * 0.53939 * 18 17 16 20 20 S 1.56641 * 109.74553 * 359.68812 * 19 18 17 21 21 C 1.46925 * 118.74102 * 53.53487 * 13 12 11 22 22 C 1.53035 * 109.46084 * 185.00105 * 10 9 7 23 23 H 0.97008 * 119.99597 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46467 * 59.99919 * 9 7 2 25 25 H 1.08999 * 109.47243 * 300.00757 * 9 7 2 26 26 H 1.08998 * 109.44926 * 304.97462 * 10 9 7 27 27 H 1.08994 * 109.39008 * 61.36660 * 11 10 9 28 28 H 1.08998 * 109.62436 * 301.25915 * 11 10 9 29 29 H 1.09000 * 109.58943 * 185.72409 * 12 11 10 30 30 H 1.08996 * 109.58891 * 65.43404 * 12 11 10 31 31 H 1.07993 * 124.05883 * 359.97438 * 17 16 14 32 32 H 1.09007 * 109.58314 * 66.18171 * 21 13 12 33 33 H 1.09001 * 109.59064 * 186.46155 * 21 13 12 34 34 H 1.09005 * 109.49698 * 58.66610 * 22 10 9 35 35 H 1.08997 * 109.52486 * 298.58702 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0015 11 6 3.0446 -3.6495 1.3068 12 6 4.0601 -4.7964 1.2895 13 7 3.3509 -6.0558 1.0251 14 6 3.4933 -7.1106 1.8519 15 8 2.8128 -8.1057 1.6908 16 6 4.4723 -7.0584 2.9496 17 6 4.4810 -7.7792 4.1292 18 7 5.5149 -7.4774 4.8793 19 7 6.3526 -6.6021 4.4876 20 16 5.9245 -6.0498 3.0857 21 6 2.4840 -6.1435 -0.1578 22 6 1.4837 -4.9838 -0.1232 23 1 -0.4850 0.8402 0.0004 24 1 0.6240 -2.5574 -0.8880 25 1 0.6245 -2.5563 0.8919 26 1 2.9281 -3.5556 -0.8413 27 1 2.3646 -3.7783 2.1489 28 1 3.5702 -2.6997 1.4050 29 1 4.5614 -4.8552 2.2556 30 1 4.7967 -4.6204 0.5057 31 1 3.7290 -8.5056 4.3997 32 1 3.0905 -6.0761 -1.0611 33 1 1.9473 -7.0922 -0.1481 34 1 0.8979 -4.9809 -1.0425 35 1 0.8182 -5.1028 0.7318 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399310650.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:33 Heat of formation + Delta-G solvation = 30.290579 kcal Electronic energy + Delta-G solvation = -19627.508315 eV Core-core repulsion = 16559.959948 eV Total energy + Delta-G solvation = -3067.548368 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.01916 -40.08813 -37.52872 -34.25607 -32.69017 -32.04434 -30.90571 -28.55100 -27.45989 -24.90218 -23.55710 -22.84419 -21.63107 -20.09983 -19.67887 -18.84143 -17.22845 -16.52225 -16.30904 -16.06938 -15.18902 -15.04455 -14.59750 -14.20371 -13.86255 -13.53654 -13.25246 -13.02407 -12.81388 -12.50923 -12.17621 -11.94396 -11.32334 -11.12463 -11.01727 -10.81673 -10.64063 -10.40275 -10.30762 -10.27558 -10.19628 -9.96223 -9.62537 -9.36483 -9.05856 -8.63718 -8.42763 -6.07199 -4.09801 -0.46079 0.55915 1.27308 1.79187 2.63363 2.85309 3.25207 3.33800 3.35572 3.80069 4.21258 4.38898 4.51098 4.75540 5.17366 5.21538 5.29416 5.32234 5.35066 5.44228 5.54674 5.79183 5.84792 6.15356 6.21568 6.35566 6.45086 6.78514 6.83994 6.97269 7.15666 7.43891 7.58291 7.71214 7.83186 7.91665 8.33079 8.96841 9.54754 11.03972 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022924 B = 0.004390 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.111653 B = 6377.071220 C = 7247.452669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.081 4.081 11 C -0.117 4.117 12 C 0.097 3.903 13 N -0.595 5.595 14 C 0.599 3.401 15 O -0.525 6.525 16 C -0.286 4.286 17 C 0.068 3.932 18 N -0.254 5.254 19 N -0.278 5.278 20 S 0.445 5.555 21 C 0.115 3.885 22 C -0.131 4.131 23 H 0.260 0.740 24 H 0.017 0.983 25 H 0.016 0.984 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.214 0.786 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.707 -12.386 2.855 15.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.075 0.925 9 C -0.010 4.010 10 C -0.100 4.100 11 C -0.155 4.155 12 C -0.028 4.028 13 N -0.328 5.328 14 C 0.384 3.616 15 O -0.403 6.403 16 C -0.427 4.427 17 C -0.098 4.098 18 N -0.118 5.118 19 N -0.258 5.258 20 S 0.581 5.419 21 C -0.007 4.007 22 C -0.169 4.169 23 H 0.070 0.930 24 H 0.036 0.964 25 H 0.034 0.966 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.230 0.770 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.882 -11.936 3.374 16.500 hybrid contribution -0.856 0.299 -0.093 0.911 sum 10.026 -11.637 3.281 15.707 Atomic orbital electron populations 1.69971 1.06080 1.26522 1.50741 1.25020 0.94790 0.99227 0.95356 0.86598 0.80105 0.84041 0.77618 1.19722 1.21059 1.21080 1.21255 0.92950 0.90895 1.50589 0.92491 1.19127 0.93569 0.90926 0.97363 1.21219 0.98060 0.94832 0.95868 1.21922 0.97333 0.96656 0.99610 1.22314 0.95964 0.84228 1.00258 1.48030 1.46681 1.12036 1.26013 1.16541 0.81379 0.83564 0.80144 1.90826 1.45548 1.32144 1.71739 1.28063 1.04906 1.06904 1.02863 1.24430 0.96825 0.99836 0.88734 1.70775 1.01707 1.10092 1.29216 1.78707 1.23137 1.11342 1.12588 1.82945 1.10476 1.31540 1.16919 1.21810 0.92477 1.00927 0.85448 1.22049 0.97607 0.94500 1.02729 0.93034 0.96418 0.96573 0.92011 0.91980 0.89047 0.91863 0.89973 0.76994 0.91017 0.89118 0.90619 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -13.35 8.39 -34.44 -0.29 -13.63 16 8 H 0.06 1.40 7.05 -52.49 -0.37 1.03 16 9 C 0.03 0.63 4.45 -27.88 -0.12 0.51 16 10 C -0.08 -1.41 2.10 -90.56 -0.19 -1.60 16 11 C -0.12 -1.81 5.19 -26.59 -0.14 -1.95 16 12 C 0.10 1.15 5.70 -3.71 -0.02 1.13 16 13 N -0.59 -7.70 2.97 -174.13 -0.52 -8.22 16 14 C 0.60 8.14 7.66 -12.63 -0.10 8.04 16 15 O -0.53 -8.46 16.46 5.26 0.09 -8.37 16 16 C -0.29 -3.34 6.21 -35.95 -0.22 -3.57 16 17 C 0.07 0.76 11.62 -17.80 -0.21 0.56 16 18 N -0.25 -3.19 11.54 30.36 0.35 -2.84 16 19 N -0.28 -3.42 12.51 60.35 0.75 -2.67 16 20 S 0.45 4.44 19.87 -107.50 -2.14 2.30 16 21 C 0.11 1.47 6.44 -3.71 -0.02 1.45 16 22 C -0.13 -1.96 5.36 -26.62 -0.14 -2.10 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.09 1.50 6.91 -51.93 -0.36 1.14 16 29 H 0.06 0.68 3.69 -24.33 -0.09 0.59 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.21 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.18 7.00 -51.93 -0.36 0.82 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 302.24 15.07 4.55 4.55 Total: -1.00 -30.56 302.24 -6.87 -37.43 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -4.12 Total: -2.98 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -1.55 Total: -9.72 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 1.32 Total: -38.73 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.37 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -2.14 Total: 2.30 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.56 -6.87 -37.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399310650.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.717 kcal (2) G-P(sol) polarization free energy of solvation -30.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds