Wall clock time and date at job start Tue Mar 31 2020 05:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46891 * 2 1 4 4 C 1.52998 * 109.47183 * 120.00059 * 2 1 3 5 5 C 1.50704 * 109.47014 * 175.00142 * 4 2 1 6 6 O 1.21283 * 120.00038 * 359.97438 * 5 4 2 7 7 N 1.34769 * 119.99926 * 180.02562 * 5 4 2 8 8 C 1.39149 * 120.00000 * 174.43235 * 7 5 4 9 9 C 1.38610 * 120.21005 * 335.13704 * 8 7 5 10 10 C 1.38195 * 120.17254 * 179.97438 * 9 8 7 11 11 C 1.39007 * 120.60145 * 0.02562 * 10 9 8 12 12 Cl 1.73600 * 119.78830 * 179.97438 * 11 10 9 13 13 C 1.37540 * 120.41897 * 359.74291 * 11 10 9 14 14 C 1.40744 * 119.81495 * 0.49038 * 13 11 10 15 15 C 1.41070 * 120.29111 * 179.78751 * 14 13 11 16 16 H 1.08001 * 119.99564 * 144.53464 * 15 14 13 17 17 C 1.39944 * 120.00285 * 324.81164 * 15 14 13 18 18 N 1.30857 * 120.00043 * 4.80456 * 17 15 14 19 19 Si 1.86795 * 120.00032 * 184.81022 * 17 15 14 20 20 H 1.48499 * 109.47371 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47347 * 119.99616 * 19 17 15 22 22 H 1.48498 * 109.47279 * 239.99588 * 19 17 15 23 23 H 1.09005 * 109.47067 * 299.99692 * 1 2 3 24 24 H 1.09000 * 109.47699 * 59.99500 * 1 2 3 25 25 H 1.08998 * 109.47253 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47272 * 240.00768 * 2 1 3 27 27 H 1.08993 * 109.47541 * 300.00392 * 3 2 1 28 28 H 1.09001 * 109.46535 * 60.00317 * 3 2 1 29 29 H 1.08996 * 109.46731 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47022 * 55.00401 * 4 2 1 31 31 H 1.08994 * 109.47339 * 295.00122 * 4 2 1 32 32 H 0.97004 * 120.00346 * 354.42134 * 7 5 4 33 33 H 1.08003 * 119.91471 * 359.97438 * 9 8 7 34 34 H 1.08000 * 119.69882 * 180.02562 * 10 9 8 35 35 H 1.08007 * 120.09245 * 180.25094 * 13 11 10 36 36 H 0.97001 * 120.00235 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.8293 1.1888 6 8 4.1450 -0.3747 0.2398 7 7 4.2149 -1.4321 2.1889 8 6 5.5872 -1.6355 2.0805 9 6 6.1838 -1.7160 0.8320 10 6 7.5468 -1.9174 0.7253 11 6 8.3350 -2.0421 1.8635 12 17 10.0451 -2.2954 1.7049 13 6 7.7693 -1.9613 3.1145 14 6 6.3821 -1.7615 3.2437 15 6 5.7907 -1.6816 4.5219 16 1 4.9589 -1.0138 4.6912 17 6 6.2854 -2.4633 5.5720 18 7 7.3541 -3.1973 5.3941 19 14 5.4202 -2.4592 7.2275 20 1 4.2454 -1.5528 7.1698 21 1 4.9684 -3.8357 7.5534 22 1 6.3594 -1.9853 8.2757 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6054 -1.7198 1.2951 31 1 1.7517 -0.1584 2.1369 32 1 3.7427 -1.7241 2.9843 33 1 5.5820 -1.6210 -0.0598 34 1 8.0038 -1.9785 -0.2514 35 1 8.3873 -2.0549 3.9954 36 1 7.6972 -3.7388 6.1220 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410964521.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:53 Heat of formation + Delta-G solvation = -46.474715 kcal Electronic energy + Delta-G solvation = -19549.646596 eV Core-core repulsion = 16444.432978 eV Total energy + Delta-G solvation = -3105.213618 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.83665 -37.62503 -35.67938 -35.21385 -33.76438 -33.57986 -29.81008 -29.18809 -27.25643 -27.00945 -25.33844 -22.08889 -21.14755 -20.02051 -19.32596 -17.57733 -16.84631 -16.17743 -15.63246 -15.14639 -14.62808 -14.35989 -13.88209 -13.81048 -13.15665 -12.99066 -12.70232 -12.37128 -12.23061 -11.95867 -11.83134 -11.57392 -11.50044 -11.26322 -11.07370 -10.85659 -10.79122 -10.60642 -10.47435 -10.43469 -10.20704 -9.69557 -9.39618 -9.22937 -8.75674 -7.50445 -6.97297 -6.70236 -4.58167 2.37052 2.72240 2.99351 3.02300 3.06459 3.32951 3.33826 3.82548 3.87464 4.50742 4.85254 4.98415 5.07416 5.37701 5.45731 5.56274 5.67037 5.69745 5.77019 5.93647 6.02789 6.16354 6.27856 6.35859 6.43508 6.58925 6.74199 6.81698 7.01383 7.05652 7.34597 7.49162 7.71422 7.84278 7.91395 8.25819 8.38852 8.64769 8.71865 8.91069 10.11653 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.013022 B = 0.006013 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.727222 B = 4655.682588 C = 6604.240151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.153 4.153 4 C -0.137 4.137 5 C 0.497 3.503 6 O -0.535 6.535 7 N -0.640 5.640 8 C 0.037 3.963 9 C -0.095 4.095 10 C -0.204 4.204 11 C -0.023 4.023 12 Cl -0.124 7.124 13 C -0.131 4.131 14 C 0.099 3.901 15 C -0.468 4.468 16 H 0.079 0.921 17 C 0.073 3.927 18 N -0.801 5.801 19 Si 0.915 3.085 20 H -0.262 1.262 21 H -0.273 1.273 22 H -0.273 1.273 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.406 0.594 33 H 0.127 0.873 34 H 0.102 0.898 35 H 0.143 0.857 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.092 2.242 -2.995 9.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.098 4.098 3 C -0.210 4.210 4 C -0.177 4.177 5 C 0.285 3.715 6 O -0.414 6.414 7 N -0.282 5.282 8 C -0.057 4.057 9 C -0.116 4.116 10 C -0.224 4.224 11 C -0.050 4.050 12 Cl -0.096 7.096 13 C -0.151 4.151 14 C 0.095 3.905 15 C -0.499 4.499 16 H 0.097 0.903 17 C -0.144 4.144 18 N -0.427 5.427 19 Si 0.740 3.260 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.198 1.198 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.242 0.758 33 H 0.144 0.856 34 H 0.121 0.879 35 H 0.160 0.840 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.419 2.369 -3.545 9.438 hybrid contribution -0.354 -0.347 1.267 1.361 sum -8.774 2.022 -2.278 9.287 Atomic orbital electron populations 1.21866 0.95364 1.01512 1.01705 1.20831 0.94604 0.96969 0.97399 1.21960 1.03600 0.94914 1.00565 1.21754 0.92601 1.02684 1.00630 1.20661 0.89859 0.77986 0.83038 1.90586 1.69840 1.47190 1.33763 1.43050 1.07620 1.57048 1.20492 1.17971 0.82075 1.11621 0.94047 1.20717 0.93887 1.00606 0.96352 1.20243 0.93354 1.13008 0.95826 1.20833 0.81600 1.06792 0.95761 1.98253 1.17301 1.95685 1.98366 1.21363 0.94770 1.04233 0.94772 1.17284 0.90155 0.91747 0.91359 1.19289 1.15479 1.21879 0.93237 0.90310 1.25877 0.94257 0.93811 1.00419 1.69747 1.18470 1.21033 1.33491 0.86141 0.80052 0.78895 0.80925 1.18548 1.19854 1.19837 0.92761 0.92646 0.92813 0.90498 0.93317 0.93553 0.90335 0.89197 0.89219 0.75802 0.85580 0.87944 0.83951 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.19 37.16 0.34 -1.03 16 2 C -0.08 -0.95 2.57 -90.62 -0.23 -1.18 16 3 C -0.15 -1.97 8.94 37.16 0.33 -1.63 16 4 C -0.14 -1.71 5.18 -27.88 -0.14 -1.85 16 5 C 0.50 8.67 7.34 -10.99 -0.08 8.59 16 6 O -0.54 -10.89 11.12 5.56 0.06 -10.83 16 7 N -0.64 -12.22 5.12 -9.48 -0.05 -12.27 16 8 C 0.04 0.86 6.46 -83.18 -0.54 0.32 16 9 C -0.10 -2.19 8.70 -39.46 -0.34 -2.53 16 10 C -0.20 -4.64 9.82 -39.31 -0.39 -5.03 16 11 C -0.02 -0.54 6.31 -39.55 -0.25 -0.79 16 12 Cl -0.12 -2.58 28.94 -51.86 -1.50 -4.08 16 13 C -0.13 -3.28 8.43 -38.89 -0.33 -3.61 16 14 C 0.10 2.44 5.56 -106.65 -0.59 1.85 16 15 C -0.47 -11.18 8.16 -37.87 -0.31 -11.49 16 16 H 0.08 1.77 7.47 -52.49 -0.39 1.38 16 17 C 0.07 1.70 5.42 -17.33 -0.09 1.61 16 18 N -0.80 -19.57 10.62 55.55 0.59 -18.98 16 19 Si 0.92 17.41 29.56 -169.99 -5.03 12.38 16 20 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 21 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 22 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.08 1.02 7.95 -51.93 -0.41 0.61 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 1.25 5.95 -51.93 -0.31 0.94 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.41 6.94 7.72 -40.82 -0.31 6.62 16 33 H 0.13 2.85 5.78 -52.48 -0.30 2.54 16 34 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 35 H 0.14 3.75 6.16 -52.48 -0.32 3.42 16 36 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 LS Contribution 313.13 15.07 4.72 4.72 Total: -1.00 -26.77 313.13 -8.40 -35.17 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -4.57 Total: 10.67 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -2.62 Total: -16.78 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: 0.54 Total: -31.25 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.06 Total: -10.83 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Atomic # 17 Polarization: -2.58 SS G_CDS: -1.50 Total: -4.08 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.77 -8.40 -35.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410964521.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.307 kcal (2) G-P(sol) polarization free energy of solvation -26.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds