Wall clock time and date at job start Tue Mar 31 2020 05:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47151 * 2 1 4 4 C 1.50705 * 109.46611 * 119.99455 * 2 1 3 5 5 O 1.21279 * 119.99879 * 115.58647 * 4 2 1 6 6 N 1.34777 * 120.00241 * 295.30268 * 4 2 1 7 7 C 1.46494 * 119.99993 * 180.02562 * 6 4 2 8 8 C 1.50705 * 109.47033 * 180.02562 * 7 6 4 9 9 H 1.07996 * 120.00030 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99852 * 179.97438 * 8 7 6 11 11 N 1.31517 * 120.00210 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99789 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47357 * 60.00405 * 12 10 8 14 14 H 1.48504 * 109.46958 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47171 * 300.00022 * 12 10 8 16 16 C 1.50695 * 109.47546 * 239.99486 * 2 1 3 17 17 C 1.38239 * 119.98658 * 125.66537 * 16 2 1 18 18 C 1.38216 * 120.01483 * 179.72488 * 17 16 2 19 19 C 1.38353 * 119.98225 * 0.55097 * 18 17 16 20 20 Cl 1.73601 * 120.01153 * 179.69949 * 19 18 17 21 21 C 1.38350 * 119.97676 * 359.72791 * 19 18 17 22 22 C 1.38217 * 119.98658 * 359.97438 * 21 19 18 23 23 H 1.08990 * 109.47815 * 300.00519 * 1 2 3 24 24 H 1.09008 * 109.46701 * 60.00638 * 1 2 3 25 25 H 1.09003 * 109.47221 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47340 * 179.97438 * 3 2 1 27 27 H 1.09008 * 109.47104 * 299.99755 * 3 2 1 28 28 H 1.09000 * 109.47314 * 59.98970 * 3 2 1 29 29 H 0.96999 * 119.99430 * 0.02562 * 6 4 2 30 30 H 1.09000 * 109.47675 * 300.00599 * 7 6 4 31 31 H 1.09005 * 109.47337 * 60.00431 * 7 6 4 32 32 H 0.96993 * 119.99932 * 180.02562 * 11 10 8 33 33 H 1.08001 * 119.99269 * 0.02562 * 17 16 2 34 34 H 1.08001 * 120.01136 * 180.27494 * 18 17 16 35 35 H 1.08000 * 120.00799 * 179.97438 * 21 19 18 36 36 H 1.07997 * 119.99266 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.6620 -1.7410 1.1212 6 7 1.7865 -0.1972 2.4524 7 6 2.2752 -0.8875 3.6486 8 6 1.8694 -0.1133 4.8763 9 1 1.3037 0.8011 4.7755 10 6 2.2195 -0.5731 6.1281 11 7 2.9080 -1.6869 6.2508 12 14 1.7171 0.3869 7.6498 13 1 0.2365 0.4870 7.7056 14 1 2.2124 -0.3129 8.8624 15 1 2.3036 1.7499 7.5912 16 6 2.0324 -0.7105 -1.2303 17 6 2.9209 -0.0774 -2.0793 18 6 3.3865 -0.7306 -3.2049 19 6 2.9543 -2.0141 -3.4878 20 17 3.5326 -2.8323 -4.9055 21 6 2.0606 -2.6450 -2.6409 22 6 1.6005 -1.9931 -1.5123 23 1 -0.3634 0.5138 0.8898 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 3.1299 1.4425 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6765 1.9564 0.8899 29 1 1.2860 0.6291 2.5396 30 1 1.8452 -1.8882 3.6919 31 1 3.3620 -0.9605 3.6074 32 1 3.1539 -2.0105 7.1315 33 1 3.2551 0.9260 -1.8604 34 1 4.0841 -0.2376 -3.8657 35 1 1.7225 -3.6467 -2.8615 36 1 0.9025 -2.4853 -0.8514 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427641847.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:20 Heat of formation + Delta-G solvation = -55.038084 kcal Electronic energy + Delta-G solvation = -19396.106972 eV Core-core repulsion = 16290.522018 eV Total energy + Delta-G solvation = -3105.584954 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.58375 -39.74632 -37.56802 -36.15808 -36.03612 -34.25297 -32.17169 -30.62969 -29.13965 -28.33816 -25.45967 -24.42730 -23.48065 -22.51975 -20.61033 -18.87209 -18.21644 -17.50040 -17.07897 -16.49612 -16.38284 -15.95117 -15.58142 -15.24288 -14.85999 -14.54532 -14.32579 -14.13624 -14.03545 -13.41143 -13.25725 -13.19672 -12.95056 -12.83265 -12.69400 -12.67151 -12.38428 -12.22727 -12.06552 -11.91807 -11.59387 -11.49992 -10.78828 -10.59240 -9.96274 -9.81188 -9.54190 -8.28773 -6.45644 0.14221 0.36376 1.14337 1.43484 1.47383 1.55542 1.77495 2.30088 2.47284 2.83769 3.06148 3.46614 3.72530 3.93221 3.97252 4.08767 4.09078 4.38981 4.50327 4.70210 4.76473 4.82410 4.85388 4.89807 5.00008 5.11967 5.18816 5.22321 5.24230 5.29478 5.34027 5.49040 5.60742 5.69575 5.83303 5.85802 6.65376 6.91409 7.23777 7.49524 8.83157 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.035365 B = 0.003423 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.544618 B = 8177.275592 C = 8539.182340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.036 4.036 3 C -0.143 4.143 4 C 0.504 3.496 5 O -0.595 6.595 6 N -0.702 5.702 7 C 0.268 3.732 8 C -0.556 4.556 9 H 0.085 0.915 10 C 0.004 3.996 11 N -0.932 5.932 12 Si 0.984 3.016 13 H -0.261 1.261 14 H -0.287 1.287 15 H -0.261 1.261 16 C -0.063 4.063 17 C -0.105 4.105 18 C -0.114 4.114 19 C -0.046 4.046 20 Cl -0.072 7.072 21 C -0.120 4.120 22 C -0.092 4.092 23 H 0.075 0.925 24 H 0.096 0.904 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.407 0.593 30 H -0.015 1.015 31 H -0.015 1.015 32 H 0.268 0.732 33 H 0.160 0.840 34 H 0.155 0.845 35 H 0.140 0.860 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.560 7.347 -19.327 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.039 4.039 3 C -0.200 4.200 4 C 0.291 3.709 5 O -0.476 6.476 6 N -0.352 5.352 7 C 0.145 3.855 8 C -0.593 4.593 9 H 0.103 0.897 10 C -0.196 4.196 11 N -0.570 5.570 12 Si 0.807 3.193 13 H -0.186 1.186 14 H -0.213 1.213 15 H -0.186 1.186 16 C -0.064 4.064 17 C -0.123 4.123 18 C -0.132 4.132 19 C -0.072 4.072 20 Cl -0.043 7.043 21 C -0.139 4.139 22 C -0.111 4.111 23 H 0.094 0.906 24 H 0.115 0.885 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.122 0.878 28 H 0.094 0.906 29 H 0.243 0.757 30 H 0.003 0.997 31 H 0.003 0.997 32 H 0.077 0.923 33 H 0.177 0.823 34 H 0.172 0.828 35 H 0.158 0.842 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.986 6.428 -19.376 20.800 hybrid contribution 0.012 -0.265 1.054 1.087 sum -3.974 6.163 -18.322 19.735 Atomic orbital electron populations 1.21905 0.89793 1.02884 1.04649 1.19767 0.98780 0.96935 0.88448 1.22030 1.01583 0.91409 1.05027 1.21230 0.79285 0.84850 0.85581 1.90654 1.42873 1.26655 1.87445 1.46148 1.55768 1.27678 1.05568 1.18509 0.92541 0.91831 0.82571 1.21589 1.36824 1.10074 0.90841 0.89700 1.26065 0.94403 0.95951 1.03146 1.70135 1.38724 1.22917 1.25266 0.85225 0.79124 0.78434 0.76559 1.18559 1.21276 1.18555 1.19630 0.97324 0.94561 0.94859 1.21398 0.95878 1.01589 0.93439 1.21277 1.00591 0.92924 0.98420 1.21056 1.00230 0.94816 0.91148 1.98352 1.87950 1.79133 1.38891 1.21133 0.97623 1.00845 0.94288 1.20980 0.99812 0.94497 0.95783 0.90561 0.88522 0.93030 0.92298 0.87837 0.90587 0.75677 0.99660 0.99713 0.92293 0.82289 0.82763 0.84196 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.17 71.98 0.59 -2.25 16 2 C -0.04 -0.95 0.72 -53.68 -0.04 -0.99 16 3 C -0.14 -2.79 7.00 71.98 0.50 -2.29 16 4 C 0.50 19.81 6.40 87.66 0.56 20.37 16 5 O -0.60 -29.42 15.32 -3.03 -0.05 -29.46 16 6 N -0.70 -29.02 5.37 -466.78 -2.51 -31.53 16 7 C 0.27 14.64 5.43 85.64 0.46 15.10 16 8 C -0.56 -29.82 9.28 25.60 0.24 -29.59 16 9 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 10 C 0.00 0.22 5.46 84.65 0.46 0.68 16 11 N -0.93 -56.17 13.29 21.45 0.28 -55.88 16 12 Si 0.98 41.78 29.54 68.60 2.03 43.81 16 13 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 14 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 16 C -0.06 -1.70 4.33 -19.86 -0.09 -1.78 16 17 C -0.11 -2.35 8.99 22.26 0.20 -2.15 16 18 C -0.11 -2.44 9.83 22.29 0.22 -2.22 16 19 C -0.05 -1.09 6.32 22.32 0.14 -0.95 16 20 Cl -0.07 -1.53 28.96 -2.72 -0.08 -1.60 16 21 C -0.12 -3.09 9.83 22.29 0.22 -2.87 16 22 C -0.09 -2.64 8.15 22.27 0.18 -2.45 16 23 H 0.08 1.48 7.90 -2.39 -0.02 1.47 16 24 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 25 H 0.05 1.20 7.08 -2.39 -0.02 1.19 16 26 H 0.06 1.24 7.25 -2.39 -0.02 1.22 16 27 H 0.10 1.33 7.78 -2.38 -0.02 1.31 16 28 H 0.08 1.38 7.31 -2.39 -0.02 1.36 16 29 H 0.41 13.78 7.22 -92.71 -0.67 13.11 16 30 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 31 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 32 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 33 H 0.16 2.68 5.91 -2.91 -0.02 2.67 16 34 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 36 H 0.12 3.52 7.23 -2.91 -0.02 3.50 16 Total: -1.00 -71.38 317.82 3.76 -67.62 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.43 Total: 18.45 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 3.65 Total: -11.40 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -2.22 Total: -87.41 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.05 Total: -29.46 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.08 Total: -1.60 kcal Total: -71.38 3.76 -67.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427641847.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.580 kcal (2) G-P(sol) polarization free energy of solvation -71.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds