Wall clock time and date at job start Tue Mar 31 2020 05:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47063 * 2 1 4 4 C 1.50695 * 109.46850 * 239.99775 * 2 1 3 5 5 O 1.21280 * 120.00171 * 245.52259 * 4 2 1 6 6 N 1.34777 * 119.99853 * 65.53112 * 4 2 1 7 7 C 1.46504 * 119.99793 * 179.97438 * 6 4 2 8 8 C 1.50694 * 109.47076 * 179.97438 * 7 6 4 9 9 H 1.08010 * 120.00183 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00159 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99798 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00170 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46897 * 59.99900 * 12 10 8 14 14 H 1.48493 * 109.47195 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47109 * 300.00424 * 12 10 8 16 16 C 1.50703 * 109.47049 * 119.99849 * 2 1 3 17 17 C 1.38264 * 119.99115 * 185.60158 * 16 2 1 18 18 C 1.38222 * 120.02289 * 179.97438 * 17 16 2 19 19 C 1.38238 * 120.01640 * 0.04772 * 18 17 16 20 20 C 1.38329 * 119.98596 * 359.97438 * 19 18 17 21 21 Cl 1.73601 * 120.01576 * 180.02562 * 20 19 18 22 22 C 1.38195 * 119.99149 * 5.62652 * 16 2 1 23 23 H 1.09004 * 109.47116 * 299.99692 * 1 2 3 24 24 H 1.09000 * 109.47307 * 59.99583 * 1 2 3 25 25 H 1.09002 * 109.47504 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47137 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47101 * 299.99902 * 3 2 1 28 28 H 1.09004 * 109.46902 * 60.00177 * 3 2 1 29 29 H 0.96995 * 120.00151 * 359.97438 * 6 4 2 30 30 H 1.09003 * 109.46741 * 299.99456 * 7 6 4 31 31 H 1.09003 * 109.47274 * 59.99840 * 7 6 4 32 32 H 0.96996 * 119.99848 * 180.02562 * 11 10 8 33 33 H 1.07991 * 119.98919 * 0.02562 * 17 16 2 34 34 H 1.07994 * 119.99187 * 180.02562 * 18 17 16 35 35 H 1.08000 * 120.00769 * 179.97438 * 19 18 17 36 36 H 1.07996 * 120.00876 * 0.27507 * 22 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2304 5 8 2.6447 -1.7516 -1.1220 6 7 1.8010 -0.1887 -2.4514 7 6 2.2898 -0.8791 -3.6475 8 6 1.9017 -0.0945 -4.8742 9 1 1.3461 0.8262 -4.7730 10 6 2.2559 -0.5519 -6.1258 11 7 2.9319 -1.6732 -6.2490 12 14 1.7742 0.4203 -7.6463 13 1 2.3743 1.7770 -7.5771 14 1 2.2697 -0.2794 -8.8587 15 1 0.2952 0.5361 -7.7119 16 6 2.0323 -0.7104 1.2305 17 6 3.3863 -0.7363 1.5092 18 6 3.8477 -1.3872 2.6379 19 6 2.9557 -2.0135 3.4883 20 6 1.6010 -1.9883 3.2097 21 17 0.4800 -2.7740 4.2773 22 6 1.1396 -1.3362 2.0797 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.3110 0.6439 -2.5381 30 1 3.3753 -0.9651 -3.5992 31 1 1.8482 -1.8744 -3.6985 32 1 3.1814 -1.9948 -7.1295 33 1 4.0836 -0.2472 0.8453 34 1 4.9054 -1.4068 2.8554 35 1 3.3164 -2.5225 4.3699 36 1 0.0825 -1.3199 1.8593 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427646795.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:22 Heat of formation + Delta-G solvation = -35.495395 kcal Electronic energy + Delta-G solvation = -19459.825449 eV Core-core repulsion = 16355.087930 eV Total energy + Delta-G solvation = -3104.737519 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.34430 -38.44294 -36.53465 -34.99291 -34.22870 -32.30647 -30.90766 -29.79108 -27.41259 -27.19572 -24.08639 -22.93363 -22.32679 -21.12243 -19.10571 -17.55568 -16.76022 -15.81289 -15.44265 -15.37551 -15.03212 -14.50754 -14.29721 -13.92844 -13.80951 -13.47661 -13.09148 -12.67440 -12.22692 -12.16822 -11.97448 -11.85975 -11.77921 -11.67271 -11.40852 -11.24950 -11.02737 -10.91526 -10.80942 -10.68500 -10.32760 -9.43281 -9.09584 -8.80637 -8.74973 -8.60546 -7.90302 -6.18419 -4.25715 1.20356 1.28109 2.08402 3.23621 3.28688 3.29984 3.32078 3.58835 4.12534 4.36257 4.46044 4.76280 4.97383 4.98184 5.08105 5.17716 5.25154 5.34428 5.41656 5.57782 5.68017 5.72628 5.76882 5.85863 5.91007 6.11653 6.14534 6.22700 6.37298 6.57586 6.80570 7.28326 7.40576 7.49444 7.63724 7.95011 8.59508 8.75356 9.06586 9.41015 10.91694 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.032691 B = 0.003537 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.305900 B = 7914.184125 C = 7979.671176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 C -0.138 4.138 4 C 0.508 3.492 5 O -0.546 6.546 6 N -0.708 5.708 7 C 0.251 3.749 8 C -0.544 4.544 9 H 0.062 0.938 10 C 0.064 3.936 11 N -0.885 5.885 12 Si 0.903 3.097 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.275 1.275 16 C -0.035 4.035 17 C -0.086 4.086 18 C -0.108 4.108 19 C -0.117 4.117 20 C -0.036 4.036 21 Cl -0.080 7.080 22 C -0.107 4.107 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.390 0.610 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.267 0.733 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.132 4.758 18.542 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.052 4.052 3 C -0.195 4.195 4 C 0.292 3.708 5 O -0.424 6.424 6 N -0.356 5.356 7 C 0.130 3.870 8 C -0.583 4.583 9 H 0.080 0.920 10 C -0.139 4.139 11 N -0.523 5.523 12 Si 0.731 3.269 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.201 1.201 16 C -0.036 4.036 17 C -0.104 4.104 18 C -0.126 4.126 19 C -0.135 4.135 20 C -0.062 4.062 21 Cl -0.052 7.052 22 C -0.126 4.126 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.223 0.777 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.698 3.794 18.521 19.097 hybrid contribution -0.515 0.654 -0.917 1.239 sum -3.213 4.447 17.603 18.438 Atomic orbital electron populations 1.21941 0.92229 1.02955 1.02927 1.19808 0.97350 0.96193 0.91813 1.21889 1.01876 0.92918 1.02826 1.20102 0.80638 0.85597 0.84467 1.90684 1.41576 1.23533 1.86648 1.46437 1.56064 1.26555 1.06568 1.19103 0.95216 0.92902 0.79782 1.21180 1.37494 1.08816 0.90780 0.91966 1.24947 0.94734 0.95067 0.99200 1.69963 1.37481 1.20480 1.24327 0.86479 0.78906 0.79888 0.81669 1.20050 1.21066 1.20051 1.19301 0.93245 0.96920 0.94090 1.21072 0.95080 0.98037 0.96209 1.21047 0.99569 0.97567 0.94439 1.20981 0.91110 1.00758 1.00678 1.20813 0.90666 1.00651 0.94093 1.98351 1.62276 1.79608 1.64932 1.21010 1.00783 0.97630 0.93172 0.91368 0.91212 0.91649 0.91778 0.91249 0.91566 0.77729 0.95553 0.95573 0.92371 0.85584 0.85198 0.85315 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 7.11 37.16 0.26 -1.43 16 2 C -0.05 -0.68 0.72 -156.81 -0.11 -0.79 16 3 C -0.14 -1.58 8.07 37.16 0.30 -1.28 16 4 C 0.51 9.89 6.35 -10.99 -0.07 9.82 16 5 O -0.55 -12.97 15.53 5.56 0.09 -12.88 16 6 N -0.71 -14.48 5.38 -61.47 -0.33 -14.81 16 7 C 0.25 6.54 5.43 -5.19 -0.03 6.52 16 8 C -0.54 -14.54 9.28 -34.44 -0.32 -14.86 16 9 H 0.06 1.54 7.60 -52.48 -0.40 1.14 16 10 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 11 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 12 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 14 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 16 C -0.03 -0.50 4.24 -104.63 -0.44 -0.94 16 17 C -0.09 -1.19 8.36 -39.58 -0.33 -1.52 16 18 C -0.11 -1.30 10.05 -39.59 -0.40 -1.69 16 19 C -0.12 -1.37 9.83 -39.55 -0.39 -1.76 16 20 C -0.04 -0.45 6.32 -39.49 -0.25 -0.70 16 21 Cl -0.08 -0.92 28.96 -51.86 -1.50 -2.42 16 22 C -0.11 -1.43 8.78 -39.54 -0.35 -1.77 16 23 H 0.07 0.64 7.78 -51.93 -0.40 0.24 16 24 H 0.07 0.78 7.97 -51.93 -0.41 0.37 16 25 H 0.06 0.83 7.24 -51.93 -0.38 0.45 16 26 H 0.06 0.76 7.09 -51.93 -0.37 0.39 16 27 H 0.07 0.75 7.27 -51.93 -0.38 0.37 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.39 6.82 7.24 -40.82 -0.30 6.52 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.13 1.73 7.25 -52.49 -0.38 1.35 16 34 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.14 1.62 5.91 -52.49 -0.31 1.31 16 LS Contribution 318.20 15.07 4.80 4.80 Total: -1.00 -31.55 318.20 -8.03 -39.57 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -4.57 Total: 4.08 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -2.22 Total: -8.75 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.41 Total: -39.97 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.09 Total: -12.88 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.55 -8.03 -39.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427646795.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.079 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds