Wall clock time and date at job start Tue Mar 31 2020 05:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47063 * 2 1 4 4 C 1.50695 * 109.46850 * 239.99775 * 2 1 3 5 5 O 1.21280 * 120.00171 * 245.52259 * 4 2 1 6 6 N 1.34777 * 119.99853 * 65.53112 * 4 2 1 7 7 C 1.46504 * 119.99793 * 179.97438 * 6 4 2 8 8 C 1.50694 * 109.47076 * 179.97438 * 7 6 4 9 9 H 1.08010 * 120.00183 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00159 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99798 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00170 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46897 * 59.99900 * 12 10 8 14 14 H 1.48493 * 109.47195 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47109 * 300.00424 * 12 10 8 16 16 C 1.50703 * 109.47049 * 119.99849 * 2 1 3 17 17 C 1.38264 * 119.99115 * 185.60158 * 16 2 1 18 18 C 1.38222 * 120.02289 * 179.97438 * 17 16 2 19 19 C 1.38238 * 120.01640 * 0.04772 * 18 17 16 20 20 C 1.38329 * 119.98596 * 359.97438 * 19 18 17 21 21 Cl 1.73601 * 120.01576 * 180.02562 * 20 19 18 22 22 C 1.38195 * 119.99149 * 5.62652 * 16 2 1 23 23 H 1.09004 * 109.47116 * 299.99692 * 1 2 3 24 24 H 1.09000 * 109.47307 * 59.99583 * 1 2 3 25 25 H 1.09002 * 109.47504 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47137 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47101 * 299.99902 * 3 2 1 28 28 H 1.09004 * 109.46902 * 60.00177 * 3 2 1 29 29 H 0.96995 * 120.00151 * 359.97438 * 6 4 2 30 30 H 1.09003 * 109.46741 * 299.99456 * 7 6 4 31 31 H 1.09003 * 109.47274 * 59.99840 * 7 6 4 32 32 H 0.96996 * 119.99848 * 180.02562 * 11 10 8 33 33 H 1.07991 * 119.98919 * 0.02562 * 17 16 2 34 34 H 1.07994 * 119.99187 * 180.02562 * 18 17 16 35 35 H 1.08000 * 120.00769 * 179.97438 * 19 18 17 36 36 H 1.07996 * 120.00876 * 0.27507 * 22 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2304 5 8 2.6447 -1.7516 -1.1220 6 7 1.8010 -0.1887 -2.4514 7 6 2.2898 -0.8791 -3.6475 8 6 1.9017 -0.0945 -4.8742 9 1 1.3461 0.8262 -4.7730 10 6 2.2559 -0.5519 -6.1258 11 7 2.9319 -1.6732 -6.2490 12 14 1.7742 0.4203 -7.6463 13 1 2.3743 1.7770 -7.5771 14 1 2.2697 -0.2794 -8.8587 15 1 0.2952 0.5361 -7.7119 16 6 2.0323 -0.7104 1.2305 17 6 3.3863 -0.7363 1.5092 18 6 3.8477 -1.3872 2.6379 19 6 2.9557 -2.0135 3.4883 20 6 1.6010 -1.9883 3.2097 21 17 0.4800 -2.7740 4.2773 22 6 1.1396 -1.3362 2.0797 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.3110 0.6439 -2.5381 30 1 3.3753 -0.9651 -3.5992 31 1 1.8482 -1.8744 -3.6985 32 1 3.1814 -1.9948 -7.1295 33 1 4.0836 -0.2472 0.8453 34 1 4.9054 -1.4068 2.8554 35 1 3.3164 -2.5225 4.3699 36 1 0.0825 -1.3199 1.8593 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427646795.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:22 Heat of formation + Delta-G solvation = -54.892327 kcal Electronic energy + Delta-G solvation = -19460.666563 eV Core-core repulsion = 16355.087930 eV Total energy + Delta-G solvation = -3105.578633 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.59665 -39.75068 -37.51527 -36.18849 -36.13199 -34.26939 -31.88627 -30.86819 -29.16742 -28.32572 -25.48420 -24.53224 -23.32195 -22.57759 -20.63959 -18.92518 -18.13736 -17.44432 -17.03410 -16.53687 -16.37459 -15.98467 -15.82628 -15.05615 -14.84574 -14.75407 -14.32829 -14.13823 -14.03752 -13.37679 -13.27128 -13.06188 -12.94295 -12.80749 -12.73710 -12.67242 -12.39156 -12.22806 -12.20405 -11.86062 -11.66245 -11.49570 -10.78848 -10.62136 -9.87323 -9.81551 -9.61202 -8.28748 -6.45589 0.19869 0.29781 1.13343 1.43592 1.47463 1.55653 1.75930 2.30211 2.47595 2.82719 3.06195 3.40693 3.75410 3.93488 4.01733 4.05245 4.15685 4.26061 4.47706 4.69167 4.73547 4.77816 4.82451 4.87976 4.98489 5.11071 5.18443 5.22459 5.24029 5.26560 5.39277 5.48652 5.56925 5.69026 5.83257 5.85538 6.65164 6.90390 7.23664 7.48299 8.83184 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.032691 B = 0.003537 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.305900 B = 7914.184125 C = 7979.671176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.036 4.036 3 C -0.136 4.136 4 C 0.505 3.495 5 O -0.594 6.594 6 N -0.702 5.702 7 C 0.268 3.732 8 C -0.556 4.556 9 H 0.085 0.915 10 C 0.005 3.995 11 N -0.932 5.932 12 Si 0.984 3.016 13 H -0.261 1.261 14 H -0.287 1.287 15 H -0.262 1.262 16 C -0.054 4.054 17 C -0.105 4.105 18 C -0.109 4.109 19 C -0.115 4.115 20 C -0.045 4.045 21 Cl -0.070 7.070 22 C -0.115 4.115 23 H 0.100 0.900 24 H 0.077 0.923 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.407 0.593 30 H -0.013 1.013 31 H -0.015 1.015 32 H 0.268 0.732 33 H 0.118 0.882 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.375 6.727 19.442 21.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.039 4.039 3 C -0.193 4.193 4 C 0.292 3.708 5 O -0.476 6.476 6 N -0.351 5.351 7 C 0.145 3.855 8 C -0.594 4.594 9 H 0.103 0.897 10 C -0.195 4.195 11 N -0.570 5.570 12 Si 0.807 3.193 13 H -0.185 1.185 14 H -0.212 1.212 15 H -0.186 1.186 16 C -0.055 4.055 17 C -0.124 4.124 18 C -0.127 4.127 19 C -0.134 4.134 20 C -0.072 4.072 21 Cl -0.041 7.041 22 C -0.133 4.133 23 H 0.119 0.881 24 H 0.096 0.904 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.243 0.757 30 H 0.005 0.995 31 H 0.003 0.997 32 H 0.077 0.923 33 H 0.136 0.864 34 H 0.172 0.828 35 H 0.170 0.830 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.970 5.805 19.457 20.689 hybrid contribution -0.091 -0.045 -1.092 1.097 sum -4.061 5.760 18.365 19.671 Atomic orbital electron populations 1.21999 0.90174 1.02858 1.04938 1.19759 0.98794 0.96866 0.88490 1.21930 1.01495 0.91202 1.04660 1.21168 0.79131 0.84990 0.85522 1.90651 1.43548 1.25921 1.87442 1.46152 1.56371 1.26991 1.05618 1.18519 0.92593 0.91827 0.82526 1.21588 1.37430 1.09448 0.90906 0.89726 1.26059 0.94343 0.96004 1.03106 1.70134 1.38963 1.22632 1.25277 0.85224 0.79111 0.78429 0.76572 1.18532 1.21240 1.18630 1.19401 0.93671 0.97960 0.94433 1.21211 0.95132 0.98965 0.97050 1.21346 1.00996 0.96684 0.93666 1.21298 0.90766 1.00130 1.01198 1.20989 0.91369 1.00615 0.94204 1.98353 1.61963 1.79348 1.64453 1.21159 1.01276 0.97537 0.93348 0.88135 0.90423 0.92845 0.92561 0.90403 0.88676 0.75690 0.99517 0.99741 0.92286 0.86375 0.82809 0.82970 0.83560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 7.11 71.98 0.51 -2.58 16 2 C -0.04 -0.98 0.72 -53.67 -0.04 -1.02 16 3 C -0.14 -2.86 8.07 71.98 0.58 -2.28 16 4 C 0.51 20.11 6.35 87.66 0.56 20.67 16 5 O -0.59 -29.61 15.53 -3.03 -0.05 -29.66 16 6 N -0.70 -29.25 5.38 -466.79 -2.51 -31.76 16 7 C 0.27 14.66 5.43 85.63 0.46 15.13 16 8 C -0.56 -29.92 9.28 25.60 0.24 -29.68 16 9 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 10 C 0.00 0.25 5.46 84.66 0.46 0.71 16 11 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16 12 Si 0.98 41.85 29.54 68.60 2.03 43.88 16 13 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 14 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 15 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 16 C -0.05 -1.50 4.24 -19.87 -0.08 -1.58 16 17 C -0.11 -2.90 8.36 22.27 0.19 -2.71 16 18 C -0.11 -2.48 10.05 22.27 0.22 -2.26 16 19 C -0.12 -2.51 9.83 22.29 0.22 -2.29 16 20 C -0.05 -1.08 6.32 22.33 0.14 -0.94 16 21 Cl -0.07 -1.48 28.96 -2.72 -0.08 -1.56 16 22 C -0.11 -2.91 8.78 22.29 0.20 -2.71 16 23 H 0.10 1.56 7.78 -2.38 -0.02 1.54 16 24 H 0.08 1.56 7.97 -2.39 -0.02 1.54 16 25 H 0.05 1.29 7.24 -2.39 -0.02 1.27 16 26 H 0.06 1.28 7.09 -2.39 -0.02 1.26 16 27 H 0.08 1.50 7.27 -2.39 -0.02 1.48 16 28 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.41 13.94 7.24 -92.71 -0.67 13.27 16 30 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 31 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 32 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 33 H 0.12 3.33 7.25 -2.92 -0.02 3.31 16 34 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 35 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 36 H 0.15 3.26 5.91 -2.91 -0.02 3.24 16 Total: -1.00 -71.17 318.20 3.76 -67.42 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.42 Total: 19.08 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 3.66 Total: -11.55 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -2.23 Total: -87.61 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.05 Total: -29.66 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.56 kcal Total: -71.17 3.76 -67.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427646795.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.526 kcal (2) G-P(sol) polarization free energy of solvation -71.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds