Wall clock time and date at job start Tue Mar 31 2020 05:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47244 * 2 1 4 4 C 1.52998 * 109.47699 * 120.00899 * 2 1 3 5 5 C 1.50695 * 109.47310 * 174.99932 * 4 2 1 6 6 O 1.21280 * 120.00108 * 359.97438 * 5 4 2 7 7 N 1.34782 * 119.99955 * 180.27404 * 5 4 2 8 8 C 1.39262 * 120.00177 * 175.47658 * 7 5 4 9 9 C 1.39461 * 119.83866 * 34.71953 * 8 7 5 10 10 C 1.36376 * 120.18093 * 179.75940 * 9 8 7 11 11 C 1.40897 * 119.84433 * 0.51657 * 10 9 8 12 12 C 1.41150 * 120.15424 * 179.76179 * 11 10 9 13 13 H 1.08001 * 120.00107 * 34.74993 * 12 11 10 14 14 C 1.39900 * 120.00111 * 214.74718 * 12 11 10 15 15 N 1.30882 * 119.99534 * 355.60028 * 14 12 11 16 16 Si 1.86794 * 120.00422 * 175.60321 * 14 12 11 17 17 H 1.48498 * 109.47256 * 59.99838 * 16 14 12 18 18 H 1.48506 * 109.47320 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46984 * 299.99786 * 16 14 12 20 20 C 1.40833 * 119.68643 * 359.73779 * 11 10 9 21 21 C 1.36485 * 119.81699 * 0.02562 * 20 11 10 22 22 Cl 1.73602 * 119.92446 * 179.97438 * 21 20 11 23 23 H 1.09006 * 109.46555 * 299.99463 * 1 2 3 24 24 H 1.08992 * 109.47436 * 59.99118 * 1 2 3 25 25 H 1.08993 * 109.47242 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46819 * 240.01003 * 2 1 3 27 27 H 1.09004 * 109.46845 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47256 * 300.00472 * 3 2 1 29 29 H 1.09006 * 109.46906 * 60.00752 * 3 2 1 30 30 H 1.09004 * 109.47277 * 54.99256 * 4 2 1 31 31 H 1.09001 * 109.46566 * 295.00149 * 4 2 1 32 32 H 0.97008 * 119.99881 * 355.47686 * 7 5 4 33 33 H 1.07999 * 119.91196 * 0.02562 * 9 8 7 34 34 H 1.07998 * 120.07779 * 180.23059 * 10 9 8 35 35 H 0.96996 * 119.99692 * 179.97438 * 15 14 12 36 36 H 1.07997 * 120.09611 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5419 -0.8295 1.1886 6 8 4.1449 -0.3748 0.2397 7 7 4.2146 -1.4369 2.1862 8 6 5.5914 -1.6207 2.0868 9 6 6.3754 -0.6600 1.4485 10 6 7.7250 -0.8306 1.3514 11 6 8.3261 -1.9862 1.8884 12 6 9.7217 -2.1718 1.7872 13 1 10.3850 -1.3213 1.8432 14 6 10.2457 -3.4574 1.6145 15 7 9.4499 -4.4963 1.6330 16 14 12.0811 -3.6912 1.3576 17 1 12.8172 -3.1586 2.5322 18 1 12.3786 -5.1377 1.2005 19 1 12.5064 -2.9633 0.1351 20 6 7.5280 -2.9550 2.5271 21 6 6.1792 -2.7685 2.6210 22 17 5.1926 -3.9612 3.4070 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5137 -0.8902 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6054 -1.7200 1.2950 31 1 1.7517 -0.1586 2.1369 32 1 3.7396 -1.7460 2.9735 33 1 5.9131 0.2234 1.0336 34 1 8.3310 -0.0838 0.8600 35 1 9.8132 -5.3876 1.5129 36 1 7.9819 -3.8431 2.9414 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452647658.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:59 Heat of formation + Delta-G solvation = -45.211066 kcal Electronic energy + Delta-G solvation = -19362.597780 eV Core-core repulsion = 16257.438958 eV Total energy + Delta-G solvation = -3105.158822 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.87271 -37.70963 -35.59469 -35.52264 -34.33348 -33.02237 -29.57645 -29.40448 -27.84659 -27.07492 -24.91024 -22.00808 -21.11419 -20.20495 -19.48118 -17.59123 -16.94118 -16.31255 -15.53177 -15.33228 -14.60242 -14.24257 -13.95975 -13.64090 -13.48952 -12.98648 -12.57564 -12.43826 -12.29094 -12.12736 -11.86557 -11.64713 -11.43198 -11.17832 -11.02400 -10.94873 -10.84455 -10.65851 -10.56781 -10.32833 -9.97905 -9.77456 -9.45957 -9.09778 -8.94970 -7.55621 -7.01338 -6.72467 -4.47483 2.38062 2.83279 3.01265 3.05331 3.07648 3.15365 3.27113 3.74151 3.90952 4.55789 4.78468 4.92601 4.97520 5.35633 5.46227 5.48831 5.58750 5.63377 5.70631 5.88033 5.97433 6.12263 6.20716 6.38433 6.48195 6.56035 6.67934 6.87474 7.01513 7.14405 7.31927 7.57897 7.67028 7.86556 8.08934 8.14974 8.42264 8.69144 8.78286 8.82920 10.17866 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027010 B = 0.004286 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.420905 B = 6531.867315 C = 7274.895326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.153 4.153 4 C -0.136 4.136 5 C 0.501 3.499 6 O -0.528 6.528 7 N -0.653 5.653 8 C 0.013 3.987 9 C -0.075 4.075 10 C -0.202 4.202 11 C 0.108 3.892 12 C -0.457 4.457 13 H 0.080 0.920 14 C 0.069 3.931 15 N -0.804 5.804 16 Si 0.919 3.081 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.265 1.265 20 C -0.136 4.136 21 C -0.023 4.023 22 Cl -0.120 7.120 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.398 0.602 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.282 0.718 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.609 3.974 1.452 12.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.099 4.099 3 C -0.210 4.210 4 C -0.176 4.176 5 C 0.288 3.712 6 O -0.405 6.405 7 N -0.296 5.296 8 C -0.081 4.081 9 C -0.095 4.095 10 C -0.222 4.222 11 C 0.105 3.895 12 C -0.487 4.487 13 H 0.098 0.902 14 C -0.147 4.147 15 N -0.431 5.431 16 Si 0.744 3.256 17 H -0.189 1.189 18 H -0.203 1.203 19 H -0.190 1.190 20 C -0.157 4.157 21 C -0.051 4.051 22 Cl -0.092 7.092 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.232 0.768 33 H 0.136 0.864 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.286 3.922 0.808 11.976 hybrid contribution 0.409 -0.640 0.309 0.820 sum -10.877 3.282 1.117 11.417 Atomic orbital electron populations 1.21860 0.95291 1.01550 1.01717 1.20844 0.94673 0.96965 0.97444 1.21960 1.03523 0.94901 1.00626 1.21752 0.92519 1.02702 1.00614 1.20649 0.89732 0.78622 0.82186 1.90636 1.69895 1.46727 1.33268 1.43033 1.07065 1.59019 1.20529 1.16934 0.81813 0.96389 1.12922 1.20388 0.93276 0.97143 0.98717 1.20906 0.93476 1.01415 1.06429 1.17594 0.93627 0.90157 0.88144 1.19474 0.91924 0.93424 1.43860 0.90153 1.25930 1.00492 0.95490 0.92802 1.69732 1.36817 0.99843 1.36683 0.86187 0.81655 0.77900 0.79907 1.18928 1.20319 1.18972 1.21203 0.89516 1.02878 1.02074 1.20443 0.92211 0.89002 1.03431 1.98249 1.71850 1.58570 1.80518 0.92796 0.92571 0.92792 0.90383 0.90396 0.93205 0.93573 0.89195 0.89329 0.76803 0.86389 0.87920 0.90722 0.83859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.19 37.16 0.34 -0.97 16 2 C -0.08 -0.94 2.57 -90.62 -0.23 -1.17 16 3 C -0.15 -1.86 8.93 37.16 0.33 -1.53 16 4 C -0.14 -1.61 5.18 -27.89 -0.14 -1.75 16 5 C 0.50 8.44 7.38 -10.99 -0.08 8.35 16 6 O -0.53 -10.73 11.35 5.56 0.06 -10.67 16 7 N -0.65 -11.53 5.01 -9.71 -0.05 -11.58 16 8 C 0.01 0.29 6.32 -83.53 -0.53 -0.24 16 9 C -0.08 -1.73 8.61 -39.80 -0.34 -2.07 16 10 C -0.20 -4.90 9.74 -39.25 -0.38 -5.28 16 11 C 0.11 2.79 5.55 -106.80 -0.59 2.20 16 12 C -0.46 -11.74 9.02 -37.86 -0.34 -12.08 16 13 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 14 C 0.07 1.70 5.42 -17.33 -0.09 1.60 16 15 N -0.80 -20.45 10.59 55.55 0.59 -19.87 16 16 Si 0.92 18.47 29.56 -169.99 -5.03 13.45 16 17 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 18 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 20 C -0.14 -3.44 8.38 -39.23 -0.33 -3.77 16 21 C -0.02 -0.52 6.30 -39.71 -0.25 -0.77 16 22 Cl -0.12 -2.31 27.92 -51.86 -1.45 -3.76 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.08 1.05 7.96 -51.92 -0.41 0.64 16 27 H 0.08 1.18 5.95 -51.93 -0.31 0.87 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.40 5.93 8.05 -40.82 -0.33 5.60 16 33 H 0.12 2.65 6.18 -52.49 -0.32 2.32 16 34 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 35 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 36 H 0.14 3.78 6.13 -52.49 -0.32 3.46 16 LS Contribution 313.83 15.07 4.73 4.73 Total: -1.00 -27.72 313.83 -8.41 -36.13 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -4.63 Total: 9.03 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -2.64 Total: -17.48 kcal Atomic # 7 Polarization: -31.98 SS G_CDS: 0.54 Total: -31.44 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.06 Total: -10.67 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -1.45 Total: -3.76 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.72 -8.41 -36.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452647658.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.081 kcal (2) G-P(sol) polarization free energy of solvation -27.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds