Wall clock time and date at job start Tue Mar 31 2020 05:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47244 * 2 1 4 4 C 1.52998 * 109.47699 * 120.00899 * 2 1 3 5 5 C 1.50695 * 109.47310 * 174.99932 * 4 2 1 6 6 O 1.21280 * 120.00108 * 359.97438 * 5 4 2 7 7 N 1.34782 * 119.99955 * 180.27404 * 5 4 2 8 8 C 1.39262 * 120.00177 * 175.47658 * 7 5 4 9 9 C 1.39461 * 119.83866 * 34.71953 * 8 7 5 10 10 C 1.36376 * 120.18093 * 179.75940 * 9 8 7 11 11 C 1.40897 * 119.84433 * 0.51657 * 10 9 8 12 12 C 1.41150 * 120.15424 * 179.76179 * 11 10 9 13 13 H 1.08001 * 120.00107 * 34.74993 * 12 11 10 14 14 C 1.39900 * 120.00111 * 214.74718 * 12 11 10 15 15 N 1.30882 * 119.99534 * 355.60028 * 14 12 11 16 16 Si 1.86794 * 120.00422 * 175.60321 * 14 12 11 17 17 H 1.48498 * 109.47256 * 59.99838 * 16 14 12 18 18 H 1.48506 * 109.47320 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46984 * 299.99786 * 16 14 12 20 20 C 1.40833 * 119.68643 * 359.73779 * 11 10 9 21 21 C 1.36485 * 119.81699 * 0.02562 * 20 11 10 22 22 Cl 1.73602 * 119.92446 * 179.97438 * 21 20 11 23 23 H 1.09006 * 109.46555 * 299.99463 * 1 2 3 24 24 H 1.08992 * 109.47436 * 59.99118 * 1 2 3 25 25 H 1.08993 * 109.47242 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46819 * 240.01003 * 2 1 3 27 27 H 1.09004 * 109.46845 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47256 * 300.00472 * 3 2 1 29 29 H 1.09006 * 109.46906 * 60.00752 * 3 2 1 30 30 H 1.09004 * 109.47277 * 54.99256 * 4 2 1 31 31 H 1.09001 * 109.46566 * 295.00149 * 4 2 1 32 32 H 0.97008 * 119.99881 * 355.47686 * 7 5 4 33 33 H 1.07999 * 119.91196 * 0.02562 * 9 8 7 34 34 H 1.07998 * 120.07779 * 180.23059 * 10 9 8 35 35 H 0.96996 * 119.99692 * 179.97438 * 15 14 12 36 36 H 1.07997 * 120.09611 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5419 -0.8295 1.1886 6 8 4.1449 -0.3748 0.2397 7 7 4.2146 -1.4369 2.1862 8 6 5.5914 -1.6207 2.0868 9 6 6.3754 -0.6600 1.4485 10 6 7.7250 -0.8306 1.3514 11 6 8.3261 -1.9862 1.8884 12 6 9.7217 -2.1718 1.7872 13 1 10.3850 -1.3213 1.8432 14 6 10.2457 -3.4574 1.6145 15 7 9.4499 -4.4963 1.6330 16 14 12.0811 -3.6912 1.3576 17 1 12.8172 -3.1586 2.5322 18 1 12.3786 -5.1377 1.2005 19 1 12.5064 -2.9633 0.1351 20 6 7.5280 -2.9550 2.5271 21 6 6.1792 -2.7685 2.6210 22 17 5.1926 -3.9612 3.4070 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5137 -0.8902 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6054 -1.7200 1.2950 31 1 1.7517 -0.1586 2.1369 32 1 3.7396 -1.7460 2.9735 33 1 5.9131 0.2234 1.0336 34 1 8.3310 -0.0838 0.8600 35 1 9.8132 -5.3876 1.5129 36 1 7.9819 -3.8431 2.9414 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452647658.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:58 Heat of formation + Delta-G solvation = -59.505473 kcal Electronic energy + Delta-G solvation = -19363.217632 eV Core-core repulsion = 16257.438958 eV Total energy + Delta-G solvation = -3105.778674 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.34418 -39.38911 -37.23343 -36.74614 -35.88182 -34.76007 -31.32539 -31.15777 -29.12591 -27.90896 -26.63042 -23.70034 -22.82718 -21.57532 -20.69526 -19.42154 -18.43329 -17.83655 -17.16202 -16.65286 -16.09033 -15.84481 -15.23633 -14.94974 -14.76968 -14.63747 -14.33422 -14.08529 -13.50543 -13.31115 -13.14583 -12.99994 -12.82606 -12.69661 -12.64669 -12.27788 -12.05925 -11.93950 -11.77383 -11.66655 -11.58796 -11.54220 -11.18987 -10.73854 -10.52006 -9.40071 -8.81402 -8.54933 -6.39782 0.61668 0.95212 1.38861 1.40810 1.47630 1.52736 1.80776 2.22433 2.35852 2.73191 3.52359 3.78408 3.95162 4.06298 4.33614 4.43301 4.67286 4.72535 4.73698 4.77791 4.88029 4.93977 5.00122 5.08042 5.14590 5.23904 5.28715 5.33456 5.45253 5.50630 5.57112 5.72559 5.86663 6.04198 6.22835 6.51341 6.67347 6.85970 6.89279 7.38472 8.36896 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027010 B = 0.004286 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.420905 B = 6531.867315 C = 7274.895326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 C -0.152 4.152 4 C -0.126 4.126 5 C 0.497 3.503 6 O -0.565 6.565 7 N -0.650 5.650 8 C 0.027 3.973 9 C -0.084 4.084 10 C -0.212 4.212 11 C 0.078 3.922 12 C -0.491 4.491 13 H 0.081 0.919 14 C 0.029 3.971 15 N -0.836 5.836 16 Si 0.990 3.010 17 H -0.257 1.257 18 H -0.270 1.270 19 H -0.263 1.263 20 C -0.154 4.154 21 C -0.031 4.031 22 Cl -0.087 7.087 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.413 0.587 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.287 0.713 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.458 3.930 1.958 14.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 C -0.209 4.209 4 C -0.165 4.165 5 C 0.287 3.713 6 O -0.444 6.444 7 N -0.295 5.295 8 C -0.068 4.068 9 C -0.104 4.104 10 C -0.232 4.232 11 C 0.075 3.925 12 C -0.521 4.521 13 H 0.099 0.901 14 C -0.184 4.184 15 N -0.463 5.463 16 Si 0.811 3.189 17 H -0.181 1.181 18 H -0.194 1.194 19 H -0.188 1.188 20 C -0.174 4.174 21 C -0.059 4.059 22 Cl -0.058 7.058 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.132 0.868 31 H 0.138 0.862 32 H 0.250 0.750 33 H 0.140 0.860 34 H 0.126 0.874 35 H 0.098 0.902 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.185 3.883 1.336 13.809 hybrid contribution 0.793 -0.584 0.158 0.998 sum -12.391 3.298 1.494 12.910 Atomic orbital electron populations 1.21796 0.92604 1.02557 1.02727 1.20857 0.96769 0.96087 0.96346 1.21925 1.01254 0.95853 1.01865 1.21831 0.87996 1.04686 1.01992 1.21661 0.91824 0.76871 0.80984 1.90634 1.71190 1.47923 1.34648 1.43079 1.05350 1.59339 1.21751 1.17019 0.83895 0.95266 1.10646 1.20511 0.93013 0.97750 0.99101 1.21057 0.94268 1.01299 1.06619 1.17894 0.94363 0.91073 0.89122 1.19734 0.92253 0.94377 1.45757 0.90056 1.26780 1.05027 0.94705 0.91907 1.69810 1.38729 1.00338 1.37419 0.85121 0.75848 0.78085 0.79869 1.18126 1.19432 1.18787 1.21108 0.90708 1.02564 1.03061 1.20478 0.92053 0.89990 1.03423 1.98245 1.70578 1.57231 1.79757 0.91243 0.92175 0.91801 0.92845 0.93816 0.92514 0.91860 0.86783 0.86227 0.74955 0.86007 0.87416 0.90245 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.19 71.98 0.66 -1.34 16 2 C -0.08 -1.72 2.57 -10.79 -0.03 -1.75 16 3 C -0.15 -3.47 8.93 71.98 0.64 -2.82 16 4 C -0.13 -2.57 5.18 29.85 0.15 -2.41 16 5 C 0.50 15.96 7.38 87.65 0.65 16.61 16 6 O -0.56 -22.90 11.35 -3.03 -0.03 -22.94 16 7 N -0.65 -21.88 5.01 -303.03 -1.52 -23.40 16 8 C 0.03 1.16 6.32 38.58 0.24 1.40 16 9 C -0.08 -3.91 8.61 22.13 0.19 -3.71 16 10 C -0.21 -10.63 9.74 22.49 0.22 -10.41 16 11 C 0.08 4.21 5.55 -21.28 -0.12 4.09 16 12 C -0.49 -26.10 9.02 23.39 0.21 -25.89 16 13 H 0.08 4.12 7.85 -2.91 -0.02 4.09 16 14 C 0.03 1.44 5.42 85.24 0.46 1.90 16 15 N -0.84 -43.51 10.59 21.82 0.23 -43.28 16 16 Si 0.99 38.17 29.56 68.60 2.03 40.20 16 17 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 18 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 20 C -0.15 -7.97 8.38 22.50 0.19 -7.79 16 21 C -0.03 -1.41 6.30 22.18 0.14 -1.27 16 22 Cl -0.09 -3.22 27.92 -2.72 -0.08 -3.29 16 23 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 1.39 7.96 -2.38 -0.02 1.37 16 27 H 0.04 1.31 5.95 -2.38 -0.01 1.29 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.41 11.24 8.05 -92.70 -0.75 10.49 16 33 H 0.12 5.56 6.18 -2.91 -0.02 5.54 16 34 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 35 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 36 H 0.13 6.96 6.13 -2.91 -0.02 6.94 16 Total: -1.00 -61.98 313.83 4.60 -57.38 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.35 Total: 28.70 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 3.61 Total: -33.38 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -1.29 Total: -66.68 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.03 Total: -22.94 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Atomic # 17 Polarization: -3.22 SS G_CDS: -0.08 Total: -3.29 kcal Total: -61.98 4.60 -57.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452647658.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.122 kcal (2) G-P(sol) polarization free energy of solvation -61.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds