Wall clock time and date at job start Tue Mar 31 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47124 * 2 1 4 4 C 1.52991 * 109.47392 * 239.99998 * 2 1 3 5 5 N 1.46503 * 109.47469 * 180.02562 * 4 2 1 6 6 C 1.34771 * 119.99668 * 270.00237 * 5 4 2 7 7 O 1.21743 * 119.99949 * 184.63199 * 6 5 4 8 8 C 1.46167 * 120.00447 * 4.62690 * 6 5 4 9 9 H 1.08001 * 120.00106 * 351.47447 * 8 6 5 10 10 C 1.40122 * 120.00144 * 171.46675 * 8 6 5 11 11 N 1.30638 * 120.00041 * 353.32367 * 10 8 6 12 12 Si 1.86804 * 119.99836 * 173.31656 * 10 8 6 13 13 H 1.48504 * 109.47002 * 94.98708 * 12 10 8 14 14 H 1.48500 * 109.47262 * 214.98326 * 12 10 8 15 15 H 1.48501 * 109.47404 * 334.99143 * 12 10 8 16 16 C 1.39531 * 120.00095 * 89.99460 * 5 4 2 17 17 C 1.39055 * 120.07591 * 247.35633 * 16 5 4 18 18 C 1.38055 * 119.93958 * 179.74846 * 17 16 5 19 19 C 1.38329 * 120.09108 * 0.55372 * 18 17 16 20 20 C 1.38425 * 120.15979 * 359.69714 * 19 18 17 21 21 Cl 1.73599 * 119.97366 * 180.02562 * 20 19 18 22 22 C 1.38201 * 120.05281 * 0.02914 * 20 19 18 23 23 H 1.08996 * 109.46770 * 60.00043 * 1 2 3 24 24 H 1.08998 * 109.47041 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47321 * 300.00002 * 1 2 3 26 26 H 1.09008 * 109.46866 * 119.99596 * 2 1 3 27 27 H 1.09006 * 109.47344 * 59.99566 * 3 2 1 28 28 H 1.09000 * 109.47189 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.47243 * 300.00251 * 3 2 1 30 30 H 1.08998 * 109.46760 * 299.99844 * 4 2 1 31 31 H 1.09001 * 109.47165 * 59.99735 * 4 2 1 32 32 H 0.97010 * 119.99524 * 179.97438 * 11 10 8 33 33 H 1.08002 * 120.03236 * 0.02562 * 17 16 5 34 34 H 1.07993 * 119.94940 * 180.25320 * 18 17 16 35 35 H 1.08004 * 119.91828 * 179.72119 * 19 18 17 36 36 H 1.08002 * 120.04758 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 7 3.5051 -0.7217 -1.2489 6 6 4.1794 0.2889 -1.8321 7 8 5.3938 0.2475 -1.9065 8 6 3.4527 1.4348 -2.3755 9 1 2.3745 1.4117 -2.4351 10 6 4.1547 2.5635 -2.8190 11 7 5.4444 2.6471 -2.6283 12 14 3.2465 3.9484 -3.6832 13 1 2.8883 4.9976 -2.6953 14 1 4.1194 4.5338 -4.7324 15 1 2.0100 3.4148 -4.3089 16 6 4.2022 -1.7685 -0.6446 17 6 4.9518 -1.5356 0.5033 18 6 5.6363 -2.5744 1.1018 19 6 5.5867 -3.8440 0.5547 20 6 4.8460 -4.0792 -0.5908 21 17 4.7867 -5.6745 -1.2729 22 6 4.1538 -3.0451 -1.1919 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 0.8901 27 1 1.6766 1.9564 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 -1.7488 -1.2491 31 1 1.6767 -0.2074 -2.1392 32 1 5.9304 3.4284 -2.9357 33 1 4.9948 -0.5439 0.9288 34 1 6.2151 -2.3946 1.9956 35 1 6.1269 -4.6537 1.0227 36 1 3.5756 -3.2288 -2.0855 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456772811.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:06 Heat of formation + Delta-G solvation = -22.684212 kcal Electronic energy + Delta-G solvation = -20225.454497 eV Core-core repulsion = 17121.272513 eV Total energy + Delta-G solvation = -3104.181984 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.56913 -37.62146 -36.10991 -35.43608 -33.28746 -32.32681 -30.37181 -29.40537 -27.07956 -25.87457 -25.29431 -22.37327 -22.21864 -19.82352 -19.48570 -16.96857 -16.44755 -15.75413 -15.44467 -15.22676 -14.48249 -14.26253 -13.90850 -13.71206 -13.33817 -13.04598 -12.66014 -12.29376 -12.02864 -11.77410 -11.58282 -11.33546 -11.27199 -11.19421 -11.10888 -11.02365 -10.70159 -10.62167 -10.46815 -10.35972 -10.19191 -9.71694 -8.93192 -8.63887 -8.36705 -7.74463 -7.37333 -6.34244 -4.70112 1.58577 1.66659 2.36412 3.06703 3.15774 3.18308 3.96187 4.03433 4.30493 4.44358 5.17659 5.29777 5.36292 5.41403 5.60131 5.65307 5.68156 5.76579 5.87258 5.99332 6.07275 6.13331 6.19944 6.33162 6.47102 6.51144 6.52489 6.66667 6.70525 6.88697 6.98053 7.05637 7.32521 7.37901 7.51365 8.08392 8.28323 8.90702 9.19400 10.43313 10.61372 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019148 B = 0.005657 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.959343 B = 4948.398284 C = 5560.208964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C -0.138 4.138 4 C 0.133 3.867 5 N -0.603 5.603 6 C 0.559 3.441 7 O -0.566 6.566 8 C -0.532 4.532 9 H 0.080 0.920 10 C 0.089 3.911 11 N -0.766 5.766 12 Si 0.902 3.098 13 H -0.272 1.272 14 H -0.278 1.278 15 H -0.263 1.263 16 C 0.204 3.796 17 C -0.109 4.109 18 C -0.100 4.100 19 C -0.135 4.135 20 C -0.024 4.024 21 Cl -0.088 7.088 22 C -0.130 4.130 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.027 0.973 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.270 0.730 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.285 -7.850 5.741 11.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 C -0.195 4.195 4 C 0.010 3.990 5 N -0.336 5.336 6 C 0.367 3.633 7 O -0.447 6.447 8 C -0.568 4.568 9 H 0.098 0.902 10 C -0.131 4.131 11 N -0.394 5.394 12 Si 0.726 3.274 13 H -0.197 1.197 14 H -0.204 1.204 15 H -0.187 1.187 16 C 0.111 3.889 17 C -0.129 4.129 18 C -0.119 4.119 19 C -0.154 4.154 20 C -0.051 4.051 21 Cl -0.059 7.059 22 C -0.151 4.151 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.447 -7.847 5.562 11.053 hybrid contribution -0.448 0.540 -0.478 0.849 sum -5.895 -7.306 5.084 10.677 Atomic orbital electron populations 1.21775 0.95806 1.00860 1.01568 1.21514 0.94611 0.98304 0.98601 1.22049 1.03123 0.94110 1.00201 1.21402 0.80311 0.98854 0.98425 1.46024 1.05288 1.22427 1.59812 1.18328 0.86889 0.80631 0.77458 1.90661 1.14237 1.78645 1.61203 1.20972 0.94077 0.98867 1.42922 0.90223 1.25691 0.94510 0.98813 0.94123 1.69956 1.07698 1.26869 1.34899 0.86441 0.80216 0.81119 0.79627 1.19706 1.20365 1.18681 1.17570 0.93171 0.87550 0.90650 1.21521 0.97472 0.99369 0.94529 1.20909 0.99121 0.91917 0.99961 1.20861 1.00894 0.97796 0.95848 1.20646 1.02139 0.85592 0.96733 1.98331 1.97719 1.24777 1.85065 1.21229 1.01593 0.92141 1.00159 0.92606 0.93378 0.93101 0.92298 0.95362 0.90858 0.91502 0.92892 0.89736 0.91896 0.85639 0.85507 0.85660 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.19 37.16 0.34 -1.50 16 2 C -0.11 -1.77 3.16 -90.62 -0.29 -2.06 16 3 C -0.14 -2.52 7.53 37.16 0.28 -2.24 16 4 C 0.13 2.36 4.91 -4.04 -0.02 2.34 16 5 N -0.60 -13.04 2.31 -115.11 -0.27 -13.30 16 6 C 0.56 14.85 6.18 -13.08 -0.08 14.76 16 7 O -0.57 -17.56 14.87 5.15 0.08 -17.48 16 8 C -0.53 -13.62 6.14 -35.69 -0.22 -13.84 16 9 H 0.08 1.85 4.45 -52.49 -0.23 1.62 16 10 C 0.09 2.32 5.48 -17.35 -0.10 2.22 16 11 N -0.77 -21.78 11.92 55.55 0.66 -21.11 16 12 Si 0.90 19.08 29.56 -169.99 -5.03 14.05 16 13 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 14 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 15 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 16 C 0.20 4.13 4.76 -83.78 -0.40 3.73 16 17 C -0.11 -2.07 9.52 -39.35 -0.37 -2.44 16 18 C -0.10 -1.57 10.04 -39.62 -0.40 -1.97 16 19 C -0.13 -2.03 9.83 -39.48 -0.39 -2.41 16 20 C -0.02 -0.39 6.32 -39.53 -0.25 -0.64 16 21 Cl -0.09 -1.24 28.95 -51.86 -1.50 -2.75 16 22 C -0.13 -2.37 9.46 -39.32 -0.37 -2.75 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 1.61 5.90 -51.93 -0.31 1.30 16 29 H 0.07 1.26 6.11 -51.93 -0.32 0.94 16 30 H 0.05 0.83 7.85 -51.93 -0.41 0.42 16 31 H 0.08 1.54 6.20 -51.93 -0.32 1.22 16 32 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 33 H 0.13 2.50 8.06 -52.49 -0.42 2.07 16 34 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 36 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 313.19 15.07 4.72 4.72 Total: -1.00 -30.64 313.19 -8.12 -38.76 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -4.53 Total: 3.89 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -2.26 Total: -6.78 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.40 Total: -34.42 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: 0.08 Total: -17.48 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -1.50 Total: -2.75 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.64 -8.12 -38.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456772811.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.079 kcal (2) G-P(sol) polarization free energy of solvation -30.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds