Wall clock time and date at job start Tue Mar 31 2020 05:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86810 * 120.00101 * 2 1 4 4 H 1.48487 * 109.47210 * 270.00612 * 3 2 1 5 5 H 1.48503 * 109.46679 * 30.00747 * 3 2 1 6 6 H 1.48500 * 109.46845 * 149.99977 * 3 2 1 7 7 C 1.37873 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00539 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99918 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.52258 * 60.08063 * 9 7 2 11 11 C 1.53036 * 109.50117 * 180.16159 * 9 7 2 12 12 C 1.53040 * 109.54303 * 181.31778 * 11 9 7 13 13 C 1.53626 * 109.23868 * 298.51428 * 12 11 9 14 14 N 1.46924 * 108.54517 * 54.85518 * 13 12 11 15 15 C 1.34771 * 120.63051 * 126.37188 * 14 13 12 16 16 O 1.21585 * 120.00004 * 184.94502 * 15 14 13 17 17 N 1.34773 * 120.00534 * 4.93428 * 15 14 13 18 18 C 1.38997 * 120.00423 * 174.92649 * 17 15 14 19 19 N 1.29627 * 124.94861 * 180.02562 * 18 17 15 20 20 C 1.32023 * 116.91097 * 179.97438 * 19 18 17 21 21 C 1.33413 * 114.56925 * 359.97438 * 20 19 18 22 22 S 1.70977 * 124.94505 * 0.29038 * 18 17 15 23 23 C 1.46932 * 118.73505 * 306.08925 * 14 13 12 24 24 H 0.97003 * 119.99841 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.45930 * 301.34023 * 11 9 7 26 26 H 1.09001 * 109.46350 * 61.29499 * 11 9 7 27 27 H 1.08996 * 109.49836 * 58.58486 * 12 11 9 28 28 H 1.08993 * 109.50191 * 178.65294 * 12 11 9 29 29 H 1.09002 * 109.74324 * 295.11162 * 13 12 11 30 30 H 1.09006 * 109.66578 * 174.54664 * 13 12 11 31 31 H 0.97003 * 119.99578 * 354.92783 * 17 15 14 32 32 H 1.07999 * 122.71348 * 179.97438 * 20 19 18 33 33 H 1.08001 * 125.96114 * 179.97438 * 21 20 19 34 34 H 1.09007 * 109.58295 * 173.64827 * 23 14 13 35 35 H 1.08996 * 109.59055 * 293.93324 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.3999 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5582 -0.8908 11 6 2.2450 -3.6628 0.0029 12 6 1.4812 -4.9885 -0.0303 13 6 0.6038 -5.0988 1.2259 14 7 -0.2555 -3.9094 1.3016 15 6 -1.5920 -4.0344 1.4216 16 8 -2.3000 -3.0464 1.3928 17 7 -2.1439 -5.2546 1.5732 18 6 -3.5095 -5.3762 1.8024 19 7 -4.1385 -6.4983 1.9622 20 6 -5.4402 -6.4290 2.1718 21 6 -5.9338 -5.1897 2.1905 22 16 -4.6051 -4.0679 1.9083 23 6 0.3706 -2.5812 1.2504 24 1 -0.4850 0.8401 0.0004 25 1 2.8891 -3.5928 -0.8737 26 1 2.8544 -3.6173 0.9055 27 1 0.8528 -5.0242 -0.9201 28 1 2.1899 -5.8163 -0.0520 29 1 1.2354 -5.1504 2.1128 30 1 -0.0156 -5.9936 1.1634 31 1 -1.5881 -6.0480 1.5224 32 1 -6.0555 -7.3046 2.3165 33 1 -6.9684 -4.9213 2.3460 34 1 -0.4026 -1.8143 1.2039 35 1 0.9816 -2.4306 2.1404 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596448374.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:12 Heat of formation + Delta-G solvation = 27.073547 kcal Electronic energy + Delta-G solvation = -19934.739482 eV Core-core repulsion = 16867.051614 eV Total energy + Delta-G solvation = -3067.687869 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.48441 -39.17004 -37.17864 -34.70892 -33.38033 -31.95864 -29.93838 -29.24208 -25.50321 -25.14677 -24.00772 -21.99842 -21.02460 -20.67297 -19.05543 -17.87408 -17.57641 -16.36212 -16.16978 -15.59356 -15.14017 -14.63281 -14.28684 -14.14855 -13.93854 -13.66776 -13.11787 -12.86538 -12.68200 -12.39744 -12.05872 -11.34692 -11.06578 -10.99290 -10.80444 -10.58798 -10.49921 -10.32115 -10.01113 -9.71738 -9.53506 -9.21577 -9.08259 -8.99817 -8.52179 -8.26940 -7.80974 -6.05606 -4.14873 1.01223 1.39106 2.12756 2.62047 2.87485 3.28040 3.35741 3.37479 3.49134 3.98756 4.38739 4.74977 5.09092 5.24505 5.31718 5.40661 5.47205 5.69479 5.83087 5.99383 6.02713 6.19635 6.28606 6.44646 6.52803 6.62623 6.81575 6.87068 7.07525 7.14435 7.56973 7.77552 7.84443 7.96124 8.14285 8.30325 8.66331 8.89154 9.51369 10.99587 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.024549 B = 0.004880 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.322105 B = 5736.360463 C = 6756.062565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.039 3.961 10 H 0.031 0.969 11 C -0.111 4.111 12 C -0.133 4.133 13 C 0.109 3.891 14 N -0.605 5.605 15 C 0.695 3.305 16 O -0.546 6.546 17 N -0.643 5.643 18 C 0.271 3.729 19 N -0.536 5.536 20 C 0.062 3.938 21 C -0.340 4.340 22 S 0.255 5.745 23 C 0.125 3.875 24 H 0.265 0.735 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.414 0.586 32 H 0.169 0.831 33 H 0.170 0.830 34 H 0.127 0.873 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.455 -11.627 4.081 13.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.078 0.922 9 C 0.020 3.980 10 H 0.049 0.951 11 C -0.149 4.149 12 C -0.171 4.171 13 C -0.015 4.015 14 N -0.340 5.340 15 C 0.395 3.605 16 O -0.422 6.422 17 N -0.298 5.298 18 C -0.097 4.097 19 N -0.260 5.260 20 C -0.090 4.090 21 C -0.481 4.481 22 S 0.504 5.496 23 C 0.005 3.995 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.254 0.746 32 H 0.186 0.814 33 H 0.188 0.812 34 H 0.145 0.855 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.546 -10.108 3.949 12.187 hybrid contribution 0.250 -0.563 0.072 0.620 sum -5.296 -10.671 4.021 12.573 Atomic orbital electron populations 1.69871 1.05724 1.26994 1.49038 1.25054 0.94896 0.99307 0.94703 0.86583 0.79816 0.83412 0.78147 1.20654 1.21139 1.19886 1.21054 0.92948 0.89966 1.52136 0.92247 1.18994 0.92609 0.92441 0.93935 0.95123 1.21631 0.98567 0.93825 1.00835 1.22023 0.98639 0.99458 0.97027 1.21760 0.93514 0.86808 0.99439 1.47855 1.02312 1.10007 1.73798 1.15912 0.83753 0.81775 0.79050 1.90887 1.59104 1.35205 1.57039 1.42281 1.04101 1.10097 1.73347 1.23325 0.90423 0.94564 1.01340 1.66337 1.09193 1.26947 1.23524 1.21210 0.88810 0.97531 1.01432 1.27475 1.06029 0.98331 1.16227 1.85313 0.93966 1.05495 1.64853 1.22431 0.98616 0.79525 0.98906 0.92528 0.92770 0.92997 0.91957 0.91882 0.91170 0.91977 0.74587 0.81394 0.81245 0.85528 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.77 11.39 55.43 0.63 -24.14 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -13.60 8.56 -34.44 -0.29 -13.89 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.04 0.93 2.25 -91.65 -0.21 0.72 16 10 H 0.03 0.81 8.14 -51.92 -0.42 0.39 16 11 C -0.11 -2.07 5.10 -26.69 -0.14 -2.20 16 12 C -0.13 -1.99 6.10 -26.39 -0.16 -2.15 16 13 C 0.11 1.55 6.42 -3.49 -0.02 1.53 16 14 N -0.60 -11.39 2.97 -178.23 -0.53 -11.92 16 15 C 0.69 13.48 8.26 -86.93 -0.72 12.76 16 16 O -0.55 -12.43 13.24 5.29 0.07 -12.36 16 17 N -0.64 -10.34 5.31 -17.48 -0.09 -10.43 16 18 C 0.27 4.46 8.19 -87.35 -0.72 3.75 16 19 N -0.54 -8.27 10.59 -15.12 -0.16 -8.43 16 20 C 0.06 0.80 11.34 -19.16 -0.22 0.58 16 21 C -0.34 -4.24 11.35 29.05 0.33 -3.91 16 22 S 0.26 4.03 20.23 -107.50 -2.17 1.86 16 23 C 0.12 2.85 5.41 -3.71 -0.02 2.83 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.71 5.64 -51.93 -0.29 0.42 16 31 H 0.41 5.50 6.31 -40.82 -0.26 5.25 16 32 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.13 3.39 5.11 -51.93 -0.27 3.12 16 35 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 299.09 15.07 4.51 4.51 Total: -1.00 -29.97 299.09 -9.19 -39.16 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -4.16 Total: 4.51 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -2.26 Total: 1.62 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.15 Total: -54.93 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.07 Total: -12.36 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -2.17 Total: 1.86 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.97 -9.19 -39.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596448374.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.230 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds