Wall clock time and date at job start Tue Mar 31 2020 05:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38321 * 119.80428 * 2 1 4 4 C 1.38206 * 120.19600 * 180.02562 * 3 2 1 5 5 F 1.35100 * 120.10126 * 179.97438 * 4 3 2 6 6 C 1.39964 * 119.79991 * 359.97438 * 4 3 2 7 7 C 1.47435 * 120.19353 * 179.97438 * 6 4 3 8 8 O 1.21618 * 120.00490 * 89.99951 * 7 6 4 9 9 N 1.34782 * 119.99805 * 270.00195 * 7 6 4 10 10 C 1.36909 * 119.99583 * 180.02562 * 9 7 6 11 11 H 1.08005 * 119.99940 * 223.89216 * 10 9 7 12 12 C 1.39027 * 120.00258 * 43.89531 * 10 9 7 13 13 N 1.31377 * 119.99948 * 18.43622 * 12 10 9 14 14 Si 1.86799 * 119.99920 * 198.43651 * 12 10 9 15 15 H 1.48496 * 109.47134 * 59.99634 * 14 12 10 16 16 H 1.48505 * 109.47189 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47158 * 299.99868 * 14 12 10 18 18 C 1.46494 * 120.00123 * 359.97438 * 9 7 6 19 19 C 1.53001 * 117.49813 * 183.27935 * 18 9 7 20 20 C 1.52996 * 60.00286 * 252.51428 * 19 18 9 21 21 C 1.39969 * 119.61249 * 359.97438 * 6 4 3 22 22 F 1.35106 * 120.09600 * 179.97438 * 21 6 4 23 23 C 1.38201 * 119.80024 * 0.02562 * 21 6 4 24 24 H 1.08999 * 109.47513 * 89.99322 * 1 2 3 25 25 H 1.08996 * 109.47029 * 209.99723 * 1 2 3 26 26 H 1.09000 * 109.46713 * 329.99700 * 1 2 3 27 27 H 1.08002 * 119.90312 * 0.27962 * 3 2 1 28 28 H 0.97002 * 120.00317 * 174.93006 * 13 12 10 29 29 H 1.08997 * 115.55478 * 328.99389 * 18 9 7 30 30 H 1.08999 * 117.50081 * 0.02562 * 19 18 9 31 31 H 1.09003 * 117.49628 * 145.02639 * 19 18 9 32 32 H 1.09002 * 117.50414 * 252.51296 * 20 19 18 33 33 H 1.09003 * 117.51397 * 107.48068 * 20 19 18 34 34 H 1.07997 * 119.89903 * 180.02562 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2003 0.0000 4 6 3.5765 1.2097 -0.0005 5 9 4.2461 2.3831 -0.0011 6 6 4.2804 -0.0001 -0.0005 7 6 5.7547 -0.0001 -0.0017 8 8 6.3637 0.0003 1.0511 9 7 6.4277 -0.0006 -1.1695 10 6 7.7968 -0.0012 -1.1705 11 1 8.3366 0.6469 -1.8450 12 6 8.4923 -0.8361 -0.3032 13 7 7.8860 -1.8637 0.2468 14 14 10.2888 -0.4968 0.0800 15 1 10.4181 0.8482 0.6959 16 1 10.7960 -1.5242 1.0247 17 1 11.0803 -0.5444 -1.1756 18 6 5.6942 -0.0017 -2.4376 19 6 6.5134 -0.0799 -3.7274 20 6 5.8303 1.2312 -3.3334 21 6 3.5764 -1.2098 0.0006 22 9 4.2460 -2.3833 0.0000 23 6 2.1944 -1.2003 0.0011 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6497 2.1328 0.0046 28 1 8.3886 -2.4881 0.7930 29 1 4.7294 -0.5086 -2.4223 30 1 7.5981 -0.1309 -3.6325 31 1 6.0876 -0.6385 -4.5610 32 1 4.9551 1.5352 -3.9076 33 1 6.4654 2.0432 -2.9790 34 1 1.6496 -2.1328 0.0023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598808245.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:59 Heat of formation + Delta-G solvation = -58.338624 kcal Electronic energy + Delta-G solvation = -22621.360964 eV Core-core repulsion = 18963.836208 eV Total energy + Delta-G solvation = -3657.524756 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.57913 -48.41632 -39.14605 -38.02265 -36.03588 -32.94734 -32.39286 -30.81273 -30.13880 -27.62874 -24.93147 -22.57617 -22.31895 -21.66617 -21.08340 -19.70516 -17.53807 -17.00622 -16.93683 -16.10876 -15.59992 -15.32934 -15.00617 -14.80034 -14.60946 -14.23928 -13.76950 -13.69234 -13.56600 -13.07972 -12.99125 -12.75930 -12.05646 -11.92493 -11.54676 -11.49469 -11.21259 -11.07517 -10.91139 -10.84111 -10.62348 -10.22234 -9.98327 -9.75920 -8.75633 -8.57437 -8.50904 -8.10216 -7.08194 -6.11710 -3.89125 1.14374 1.23441 3.30603 3.38604 3.41954 3.51676 3.90128 4.13233 4.26424 4.57889 4.67522 4.71843 4.76772 5.12297 5.20170 5.26520 5.35981 5.43785 5.47466 5.58522 5.64915 5.76826 5.89677 6.00223 6.16813 6.23054 6.23391 6.27862 6.41777 6.43777 6.73163 6.92330 7.01587 7.59992 8.22964 8.98770 9.07593 9.58420 10.18467 10.96226 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.021205 B = 0.006799 C = 0.006324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.144379 B = 4117.373701 C = 4426.391446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.036 4.036 3 C -0.175 4.175 4 C 0.156 3.844 5 F -0.123 7.123 6 C -0.165 4.165 7 C 0.521 3.479 8 O -0.518 6.518 9 N -0.408 5.408 10 C -0.352 4.352 11 H 0.082 0.918 12 C 0.073 3.927 13 N -0.824 5.824 14 Si 0.916 3.084 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.277 1.277 18 C 0.072 3.928 19 C -0.170 4.170 20 C -0.204 4.204 21 C 0.159 3.841 22 F -0.113 7.113 23 C -0.176 4.176 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.140 0.860 28 H 0.267 0.733 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.776 2.724 -4.341 14.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.036 4.036 3 C -0.194 4.194 4 C 0.136 3.864 5 F -0.101 7.101 6 C -0.170 4.170 7 C 0.307 3.693 8 O -0.395 6.395 9 N -0.127 5.127 10 C -0.479 4.479 11 H 0.099 0.901 12 C -0.139 4.139 13 N -0.456 5.456 14 Si 0.743 3.257 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.202 1.202 18 C -0.034 4.034 19 C -0.207 4.207 20 C -0.243 4.243 21 C 0.138 3.862 22 F -0.091 7.091 23 C -0.195 4.195 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.157 0.843 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.368 2.575 -3.589 14.079 hybrid contribution 1.078 -0.037 0.141 1.088 sum -12.290 2.538 -3.448 13.014 Atomic orbital electron populations 1.20794 0.89973 1.03228 1.02778 1.19468 0.96288 0.91260 0.96594 1.20872 0.91634 0.99371 1.07484 1.17348 0.89312 0.80361 0.99366 1.91540 1.80828 1.44559 1.93223 1.20662 0.98231 0.91634 1.06502 1.17201 0.83556 0.83254 0.85319 1.90657 1.67641 1.50639 1.30550 1.42586 1.05137 1.64386 1.00630 1.18834 0.79282 1.24226 1.25539 0.90082 1.25306 0.99086 0.93629 0.95897 1.69830 1.36814 1.10180 1.28781 0.86223 0.82802 0.78536 0.78172 1.19835 1.21086 1.20238 1.21643 0.96655 1.00199 0.84921 1.23072 1.01101 0.99474 0.97065 1.23302 1.02882 0.93025 1.05061 1.17465 0.89276 0.80901 0.98511 1.91627 1.80611 1.44002 1.92849 1.20937 0.91767 0.99416 1.07353 0.90576 0.91041 0.91060 0.84258 0.92316 0.88510 0.87294 0.89688 0.89744 0.88912 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.00 36.00 0.36 -0.55 16 2 C -0.04 -0.45 5.88 -104.56 -0.62 -1.06 16 3 C -0.17 -2.46 9.65 -39.56 -0.38 -2.84 16 4 C 0.16 2.94 7.29 -38.95 -0.28 2.66 16 5 F -0.12 -2.48 16.83 2.25 0.04 -2.44 16 6 C -0.16 -3.63 4.02 -104.86 -0.42 -4.06 16 7 C 0.52 14.25 5.69 -12.51 -0.07 14.18 16 8 O -0.52 -16.40 14.83 5.26 0.08 -16.32 16 9 N -0.41 -10.79 2.83 -108.93 -0.31 -11.10 16 10 C -0.35 -9.89 7.93 -14.99 -0.12 -10.01 16 11 H 0.08 2.17 7.24 -52.48 -0.38 1.79 16 12 C 0.07 2.09 4.37 -17.45 -0.08 2.02 16 13 N -0.82 -25.05 11.72 55.50 0.65 -24.40 16 14 Si 0.92 22.32 29.60 -169.99 -5.03 17.29 16 15 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 C 0.07 1.55 5.89 -67.93 -0.40 1.15 16 19 C -0.17 -3.18 9.80 -26.73 -0.26 -3.45 16 20 C -0.20 -3.69 10.36 -26.73 -0.28 -3.97 16 21 C 0.16 3.14 7.03 -38.95 -0.27 2.86 16 22 F -0.11 -2.55 16.83 2.25 0.04 -2.51 16 23 C -0.18 -2.57 9.65 -39.56 -0.38 -2.95 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 26 H 0.07 0.49 8.08 -51.93 -0.42 0.08 16 27 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.27 7.75 8.32 -40.82 -0.34 7.41 16 29 H 0.10 1.97 7.11 -51.93 -0.37 1.60 16 30 H 0.11 2.22 6.71 -51.93 -0.35 1.87 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 34 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 305.77 15.07 4.61 4.61 Total: -1.00 -34.56 305.77 -6.74 -41.30 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -3.61 Total: -0.39 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -3.20 Total: -6.03 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.34 Total: -35.50 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.08 Total: -16.32 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.08 Total: -4.95 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.56 -6.74 -41.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598808245.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.038 kcal (2) G-P(sol) polarization free energy of solvation -34.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds