Wall clock time and date at job start Tue Mar 31 2020 05:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00168 * 2 1 4 4 H 1.48503 * 109.46941 * 269.99961 * 3 2 1 5 5 H 1.48500 * 109.47307 * 29.99761 * 3 2 1 6 6 H 1.48497 * 109.47208 * 150.00398 * 3 2 1 7 7 C 1.37876 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00182 * 0.02562 * 7 2 1 9 9 C 1.50707 * 120.00017 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47257 * 180.02562 * 9 7 2 11 11 C 1.46897 * 110.99932 * 170.00174 * 10 9 7 12 12 C 1.53238 * 109.33960 * 187.25490 * 11 10 9 13 13 N 1.47081 * 108.51939 * 306.16705 * 12 11 10 14 14 C 1.34772 * 120.88389 * 231.18544 * 13 12 11 15 15 O 1.21615 * 120.00264 * 184.12003 * 14 13 12 16 16 C 1.47259 * 120.00037 * 4.12196 * 14 13 12 17 17 N 1.30559 * 125.54323 * 133.04334 * 16 14 13 18 18 C 1.30701 * 115.90791 * 180.02562 * 17 16 14 19 19 C 1.34237 * 115.78382 * 0.24935 * 18 17 16 20 20 S 1.71072 * 109.09020 * 359.62699 * 19 18 17 21 21 C 1.47075 * 118.23557 * 51.46363 * 13 12 11 22 22 C 1.46899 * 110.99997 * 294.30063 * 10 9 7 23 23 H 0.96998 * 119.99976 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46752 * 59.99861 * 9 7 2 25 25 H 1.09001 * 109.47000 * 300.00545 * 9 7 2 26 26 H 1.09001 * 109.49393 * 67.29392 * 11 10 9 27 27 H 1.09001 * 109.51492 * 307.22507 * 11 10 9 28 28 H 1.09001 * 109.62760 * 186.46184 * 12 11 10 29 29 H 1.08999 * 109.62850 * 65.87850 * 12 11 10 30 30 H 1.07992 * 122.11035 * 179.97438 * 18 17 16 31 31 H 1.08000 * 125.45781 * 179.75478 * 19 18 17 32 32 H 1.08997 * 109.63398 * 68.24552 * 21 13 12 33 33 H 1.09000 * 109.63124 * 188.83256 * 21 13 12 34 34 H 1.08994 * 109.49882 * 292.70862 * 22 10 9 35 35 H 1.09008 * 109.49290 * 52.78834 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 4.0011 -2.5792 0.0001 11 6 5.4498 -2.6254 -0.2386 12 6 5.8894 -4.0832 -0.4113 13 7 5.4263 -4.8519 0.7540 14 6 6.2766 -5.6316 1.4507 15 8 5.8618 -6.3182 2.3649 16 6 7.7079 -5.6523 1.1051 17 7 8.6951 -5.5583 1.9543 18 6 9.8962 -5.5974 1.4403 19 6 9.9561 -5.7240 0.1053 20 16 8.3663 -5.8071 -0.5208 21 6 4.0092 -4.7521 1.1349 22 6 3.6450 -3.2633 1.2503 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6797 0.8895 25 1 3.8745 -0.6809 -0.8905 26 1 5.9726 -2.1860 0.6110 27 1 5.6881 -2.0642 -1.1421 28 1 6.9765 -4.1328 -0.4740 29 1 5.4482 -4.4935 -1.3196 30 1 10.7843 -5.5276 2.0507 31 1 10.8629 -5.7685 -0.4797 32 1 3.3908 -5.2254 0.3723 33 1 3.8525 -5.2441 2.0948 34 1 4.1928 -2.8151 2.0791 35 1 2.5737 -3.1649 1.4264 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601257841.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:14 Heat of formation + Delta-G solvation = 38.163180 kcal Electronic energy + Delta-G solvation = -19676.579918 eV Core-core repulsion = 16609.372933 eV Total energy + Delta-G solvation = -3067.206986 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.51117 -39.41636 -37.62715 -34.66892 -32.44277 -31.45528 -30.51493 -28.94920 -26.78439 -25.53024 -23.62700 -22.40792 -21.40184 -20.14209 -19.41552 -18.36526 -17.05799 -16.82158 -16.37254 -15.54867 -15.33447 -14.70737 -14.67134 -14.31234 -14.20771 -13.94837 -13.60926 -13.55410 -12.90240 -12.60955 -12.38535 -11.81739 -11.65301 -11.38380 -11.05407 -10.89344 -10.64366 -10.60584 -10.42098 -10.00202 -9.90808 -9.85836 -9.38577 -9.08556 -8.71072 -8.62985 -7.55117 -6.11412 -4.09774 0.04361 0.79275 1.31047 2.20900 2.51630 3.01158 3.23707 3.32017 3.32974 3.97061 4.36163 4.50228 4.59724 4.76824 4.95724 5.02430 5.13901 5.23616 5.29067 5.46385 5.63777 5.69180 5.75754 5.84391 5.98568 6.19372 6.38648 6.50953 6.75616 6.86511 7.13113 7.33306 7.47321 7.73494 7.87997 7.90832 8.55902 8.95907 9.49678 11.01397 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.031319 B = 0.004101 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.808291 B = 6825.906709 C = 7243.763389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.513 4.513 8 H 0.082 0.918 9 C 0.163 3.837 10 N -0.526 5.526 11 C 0.039 3.961 12 C 0.100 3.900 13 N -0.595 5.595 14 C 0.595 3.405 15 O -0.510 6.510 16 C 0.007 3.993 17 N -0.411 5.411 18 C 0.029 3.971 19 C -0.279 4.279 20 S 0.196 5.804 21 C 0.119 3.881 22 C 0.049 3.951 23 H 0.264 0.736 24 H -0.010 1.010 25 H 0.026 0.974 26 H 0.030 0.970 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.179 0.821 31 H 0.184 0.816 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.028 0.972 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.166 -10.134 -2.897 21.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.551 4.551 8 H 0.100 0.900 9 C 0.037 3.963 10 N -0.250 5.250 11 C -0.091 4.091 12 C -0.024 4.024 13 N -0.329 5.329 14 C 0.377 3.623 15 O -0.385 6.385 16 C -0.271 4.271 17 N -0.127 5.127 18 C -0.127 4.127 19 C -0.419 4.419 20 S 0.450 5.550 21 C -0.003 4.003 22 C -0.080 4.080 23 H 0.074 0.926 24 H 0.008 0.992 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.196 0.804 31 H 0.202 0.798 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.047 0.953 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 17.970 -10.680 -3.210 21.149 hybrid contribution 1.909 1.571 1.045 2.685 sum 19.879 -9.109 -2.165 21.974 Atomic orbital electron populations 1.69884 1.06119 1.26948 1.50665 1.24885 0.94723 0.98839 0.94723 0.86879 0.80291 0.84088 0.78589 1.20102 1.21149 1.19354 1.20996 0.88517 0.94810 1.50805 0.89965 1.20187 0.97271 0.83595 0.95278 1.61924 1.09573 1.19447 1.34084 1.22415 0.91006 0.94403 1.01239 1.22275 0.99032 0.92613 0.88467 1.48090 1.10445 1.44278 1.30039 1.16741 0.82411 0.80758 0.82388 1.90837 1.76536 1.41580 1.29538 1.27577 0.98521 1.09003 0.91954 1.66688 0.98510 1.12013 1.35457 1.21834 0.95331 1.03165 0.92342 1.26851 1.04033 1.11031 1.00019 1.84110 0.96874 1.63171 1.10797 1.22101 0.78090 0.97969 1.02117 1.22503 1.03352 0.91478 0.90655 0.92566 0.99245 0.95553 0.95214 0.89622 0.90420 0.89359 0.80396 0.79848 0.89888 0.88766 0.95339 0.87456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.96 55.43 0.77 -25.94 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.87 20.83 27.47 -169.99 -4.67 16.16 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.51 -13.88 8.96 -34.44 -0.31 -14.19 16 8 H 0.08 2.40 7.37 -52.49 -0.39 2.02 16 9 C 0.16 3.72 3.79 -4.97 -0.02 3.70 16 10 N -0.53 -10.12 4.62 -235.46 -1.09 -11.21 16 11 C 0.04 0.60 5.62 -3.70 -0.02 0.58 16 12 C 0.10 1.27 6.03 -3.60 -0.02 1.24 16 13 N -0.59 -8.77 3.00 -173.52 -0.52 -9.29 16 14 C 0.59 9.42 7.68 -12.60 -0.10 9.32 16 15 O -0.51 -9.67 16.58 5.26 0.09 -9.59 16 16 C 0.01 0.09 6.47 -14.43 -0.09 0.00 16 17 N -0.41 -5.71 10.65 -11.50 -0.12 -5.83 16 18 C 0.03 0.29 11.24 -19.44 -0.22 0.07 16 19 C -0.28 -2.16 11.09 29.32 0.33 -1.84 16 20 S 0.20 1.77 20.21 -107.50 -2.17 -0.40 16 21 C 0.12 1.84 6.62 -3.36 -0.02 1.81 16 22 C 0.05 0.89 5.47 -3.46 -0.02 0.87 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H -0.01 -0.24 7.18 -51.93 -0.37 -0.61 16 25 H 0.03 0.60 7.40 -51.93 -0.38 0.21 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.09 1.19 7.99 -51.93 -0.41 0.78 16 28 H 0.08 0.83 4.27 -34.62 -0.15 0.69 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.18 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.46 7.08 -51.93 -0.37 1.09 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.11 2.14 6.67 -51.92 -0.35 1.79 16 LS Contribution 300.63 15.07 4.53 4.53 Total: -1.00 -32.71 300.63 -7.90 -40.61 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -4.12 Total: -2.49 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -0.59 Total: 3.45 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -0.96 Total: -52.26 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.17 Total: -0.40 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.71 -7.90 -40.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601257841.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.773 kcal (2) G-P(sol) polarization free energy of solvation -32.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds