Wall clock time and date at job start Tue Mar 31 2020 05:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00168 * 2 1 4 4 H 1.48503 * 109.46941 * 269.99961 * 3 2 1 5 5 H 1.48500 * 109.47307 * 29.99761 * 3 2 1 6 6 H 1.48497 * 109.47208 * 150.00398 * 3 2 1 7 7 C 1.37876 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00182 * 0.02562 * 7 2 1 9 9 C 1.50707 * 120.00017 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47257 * 180.02562 * 9 7 2 11 11 C 1.46897 * 110.99932 * 170.00174 * 10 9 7 12 12 C 1.53238 * 109.33960 * 187.25490 * 11 10 9 13 13 N 1.47081 * 108.51939 * 306.16705 * 12 11 10 14 14 C 1.34772 * 120.88389 * 231.18544 * 13 12 11 15 15 O 1.21615 * 120.00264 * 184.12003 * 14 13 12 16 16 C 1.47259 * 120.00037 * 4.12196 * 14 13 12 17 17 N 1.30559 * 125.54323 * 133.04334 * 16 14 13 18 18 C 1.30701 * 115.90791 * 180.02562 * 17 16 14 19 19 C 1.34237 * 115.78382 * 0.24935 * 18 17 16 20 20 S 1.71072 * 109.09020 * 359.62699 * 19 18 17 21 21 C 1.47075 * 118.23557 * 51.46363 * 13 12 11 22 22 C 1.46899 * 110.99997 * 294.30063 * 10 9 7 23 23 H 0.96998 * 119.99976 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46752 * 59.99861 * 9 7 2 25 25 H 1.09001 * 109.47000 * 300.00545 * 9 7 2 26 26 H 1.09001 * 109.49393 * 67.29392 * 11 10 9 27 27 H 1.09001 * 109.51492 * 307.22507 * 11 10 9 28 28 H 1.09001 * 109.62760 * 186.46184 * 12 11 10 29 29 H 1.08999 * 109.62850 * 65.87850 * 12 11 10 30 30 H 1.07992 * 122.11035 * 179.97438 * 18 17 16 31 31 H 1.08000 * 125.45781 * 179.75478 * 19 18 17 32 32 H 1.08997 * 109.63398 * 68.24552 * 21 13 12 33 33 H 1.09000 * 109.63124 * 188.83256 * 21 13 12 34 34 H 1.08994 * 109.49882 * 292.70862 * 22 10 9 35 35 H 1.09008 * 109.49290 * 52.78834 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 4.0011 -2.5792 0.0001 11 6 5.4498 -2.6254 -0.2386 12 6 5.8894 -4.0832 -0.4113 13 7 5.4263 -4.8519 0.7540 14 6 6.2766 -5.6316 1.4507 15 8 5.8618 -6.3182 2.3649 16 6 7.7079 -5.6523 1.1051 17 7 8.6951 -5.5583 1.9543 18 6 9.8962 -5.5974 1.4403 19 6 9.9561 -5.7240 0.1053 20 16 8.3663 -5.8071 -0.5208 21 6 4.0092 -4.7521 1.1349 22 6 3.6450 -3.2633 1.2503 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6797 0.8895 25 1 3.8745 -0.6809 -0.8905 26 1 5.9726 -2.1860 0.6110 27 1 5.6881 -2.0642 -1.1421 28 1 6.9765 -4.1328 -0.4740 29 1 5.4482 -4.4935 -1.3196 30 1 10.7843 -5.5276 2.0507 31 1 10.8629 -5.7685 -0.4797 32 1 3.3908 -5.2254 0.3723 33 1 3.8525 -5.2441 2.0948 34 1 4.1928 -2.8151 2.0791 35 1 2.5737 -3.1649 1.4264 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601257841.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:14 Heat of formation + Delta-G solvation = 12.841920 kcal Electronic energy + Delta-G solvation = -19677.677931 eV Core-core repulsion = 16609.372933 eV Total energy + Delta-G solvation = -3068.304998 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.58398 -40.38812 -38.99160 -36.14317 -34.44571 -32.60212 -31.50809 -30.53653 -28.03025 -26.84540 -24.85267 -23.76770 -22.86175 -21.38670 -20.28252 -19.50971 -18.88060 -18.03491 -17.46594 -16.71633 -16.49638 -16.22899 -16.02802 -15.70634 -15.24611 -15.20805 -14.98154 -14.63589 -14.46241 -14.06077 -13.76642 -13.30375 -12.90079 -12.63435 -12.50859 -12.35196 -12.27708 -12.06418 -11.86924 -11.64861 -11.42437 -10.81657 -10.76116 -10.68300 -10.00497 -9.82095 -9.11748 -8.26269 -6.29751 -0.75489 -0.00806 0.60493 1.21108 1.36465 1.38534 1.47933 1.53657 1.99228 2.35828 3.01623 3.05304 3.12012 3.75920 3.84206 3.94398 4.10138 4.17786 4.30026 4.33952 4.35942 4.46997 4.62133 4.77269 4.80180 4.89822 4.97325 5.02957 5.06680 5.26441 5.52661 5.88400 6.06633 6.24181 6.53941 6.59827 6.75353 6.77087 7.33891 8.89948 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.031319 B = 0.004101 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.808291 B = 6825.906709 C = 7243.763389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.010 3.990 3 Si 0.945 3.055 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.516 4.516 8 H 0.043 0.957 9 C 0.171 3.829 10 N -0.534 5.534 11 C 0.036 3.964 12 C 0.105 3.895 13 N -0.595 5.595 14 C 0.594 3.406 15 O -0.557 6.557 16 C -0.050 4.050 17 N -0.446 5.446 18 C 0.006 3.994 19 C -0.250 4.250 20 S 0.262 5.738 21 C 0.129 3.871 22 C 0.056 3.944 23 H 0.266 0.734 24 H -0.017 1.017 25 H 0.039 0.961 26 H 0.024 0.976 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.202 0.798 31 H 0.227 0.773 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.019 0.981 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.921 -9.824 -4.909 25.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.188 4.188 3 Si 0.769 3.231 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.178 1.178 7 C -0.554 4.554 8 H 0.062 0.938 9 C 0.044 3.956 10 N -0.259 5.259 11 C -0.092 4.092 12 C -0.018 4.018 13 N -0.328 5.328 14 C 0.379 3.621 15 O -0.435 6.435 16 C -0.324 4.324 17 N -0.163 5.163 18 C -0.149 4.149 19 C -0.390 4.390 20 S 0.515 5.485 21 C 0.007 3.993 22 C -0.073 4.073 23 H 0.075 0.925 24 H 0.001 0.999 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.126 0.874 28 H 0.120 0.880 29 H 0.125 0.875 30 H 0.219 0.781 31 H 0.243 0.757 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.037 0.963 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 21.744 -10.378 -5.245 24.658 hybrid contribution 0.832 1.369 1.604 2.267 sum 22.576 -9.009 -3.641 24.578 Atomic orbital electron populations 1.70043 1.08113 1.28055 1.52542 1.25801 0.95522 1.03008 0.94438 0.85754 0.79180 0.78859 0.79353 1.18563 1.21220 1.17839 1.21251 0.90932 0.93410 1.49839 0.93824 1.19960 0.94414 0.85877 0.95300 1.61832 1.12542 1.17268 1.34260 1.22578 0.88028 0.96658 1.01985 1.22416 1.00649 0.90546 0.88171 1.48122 1.09856 1.44292 1.30555 1.17128 0.83712 0.79835 0.81461 1.90791 1.77824 1.43419 1.31444 1.27044 0.97148 1.13244 0.94931 1.66647 0.99912 1.12330 1.37405 1.22230 0.94800 1.04122 0.93734 1.27426 1.05049 1.07072 0.99494 1.83816 0.96764 1.61102 1.06779 1.21868 0.79325 0.95749 1.02408 1.22356 1.01501 0.93268 0.90218 0.92485 0.99900 0.94266 0.95728 0.87393 0.87968 0.87505 0.78090 0.75669 0.88987 0.89206 0.96316 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.02 13.96 21.45 0.30 -57.72 16 2 C 0.01 0.56 5.47 84.65 0.46 1.02 16 3 Si 0.94 42.75 27.47 68.60 1.88 44.63 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 7 C -0.52 -28.63 8.96 25.60 0.23 -28.40 16 8 H 0.04 2.69 7.37 -2.91 -0.02 2.67 16 9 C 0.17 7.76 3.79 85.56 0.32 8.08 16 10 N -0.53 -20.36 4.62 -898.86 -4.15 -24.52 16 11 C 0.04 1.04 5.62 86.38 0.49 1.52 16 12 C 0.10 2.40 6.03 86.35 0.52 2.92 16 13 N -0.60 -17.23 3.00 -821.13 -2.47 -19.69 16 14 C 0.59 18.85 7.68 86.62 0.67 19.52 16 15 O -0.56 -21.91 16.58 -4.08 -0.07 -21.98 16 16 C -0.05 -1.27 6.47 87.26 0.56 -0.71 16 17 N -0.45 -11.84 10.65 -190.31 -2.03 -13.86 16 18 C 0.01 0.11 11.24 83.95 0.94 1.05 16 19 C -0.25 -2.69 11.09 66.91 0.74 -1.94 16 20 S 0.26 3.72 20.21 -56.49 -1.14 2.58 16 21 C 0.13 4.08 6.62 86.51 0.57 4.65 16 22 C 0.06 2.09 5.47 86.54 0.47 2.57 16 23 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 24 H -0.02 -0.78 7.18 -2.39 -0.02 -0.79 16 25 H 0.04 1.69 7.40 -2.39 -0.02 1.67 16 26 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.11 2.62 7.99 -2.39 -0.02 2.60 16 28 H 0.10 1.85 4.27 -13.39 -0.06 1.79 16 29 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.20 2.17 8.06 -2.91 -0.02 2.14 16 31 H 0.23 0.46 8.06 -2.91 -0.02 0.44 16 32 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.09 2.93 7.08 -2.39 -0.02 2.92 16 34 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.08 3.39 6.67 -2.38 -0.02 3.38 16 Total: -1.00 -74.88 300.63 -0.68 -75.56 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: 1.00 Total: 4.72 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 5.98 Total: 10.28 kcal Atomic # 7 Polarization: -107.44 SS G_CDS: -8.34 Total: -115.79 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.07 Total: -21.98 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.88 Total: 44.63 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.14 Total: 2.58 kcal Total: -74.88 -0.68 -75.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601257841.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.402 kcal (2) G-P(sol) polarization free energy of solvation -74.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds