Wall clock time and date at job start Tue Mar 31 2020 05:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81005 * 1 3 3 C 1.76198 * 99.99747 * 2 1 4 4 C 1.35117 * 120.00171 * 179.97438 * 3 2 1 5 5 C 1.41257 * 120.00011 * 0.02562 * 4 3 2 6 6 O 1.21818 * 119.99825 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00087 * 179.97438 * 5 4 3 8 8 C 1.40103 * 119.99697 * 179.97438 * 7 5 4 9 9 C 1.40424 * 125.97754 * 0.29926 * 8 7 5 10 10 C 1.35232 * 107.86568 * 180.14423 * 9 8 7 11 11 C 1.50703 * 126.06766 * 179.84878 * 10 9 8 12 12 N 1.34973 * 107.86541 * 359.58490 * 10 9 8 13 13 C 1.46494 * 125.97409 * 180.24172 * 12 10 9 14 14 C 1.50704 * 109.47078 * 90.00076 * 13 12 10 15 15 H 1.07995 * 120.00113 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99820 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99834 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00071 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47251 * 89.99878 * 18 16 14 20 20 H 1.48499 * 109.46925 * 209.99654 * 18 16 14 21 21 H 1.48496 * 109.47387 * 329.99449 * 18 16 14 22 22 N 1.31229 * 125.97270 * 179.97438 * 8 7 5 23 23 H 1.09000 * 109.47072 * 299.99541 * 1 2 3 24 24 H 1.08998 * 109.46986 * 60.00608 * 1 2 3 25 25 H 1.09004 * 109.46705 * 180.02562 * 1 2 3 26 26 H 1.08001 * 120.00294 * 0.02562 * 3 2 1 27 27 H 1.07993 * 120.00509 * 180.02562 * 4 3 2 28 28 H 0.96995 * 120.00230 * 0.02562 * 7 5 4 29 29 H 1.08001 * 126.06603 * 0.02562 * 9 8 7 30 30 H 1.09002 * 109.47152 * 269.68932 * 11 10 9 31 31 H 1.09001 * 109.46980 * 149.69032 * 11 10 9 32 32 H 1.09004 * 109.47113 * 29.69013 * 11 10 9 33 33 H 1.08998 * 109.47501 * 209.99600 * 13 12 10 34 34 H 1.09003 * 109.47268 * 330.00193 * 13 12 10 35 35 H 0.96999 * 120.00540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 3.3856 2.1975 0.0005 5 6 4.4678 1.2896 0.0005 6 8 4.2563 0.0899 0.0005 7 7 5.7342 1.7506 0.0005 8 6 6.8074 0.8500 0.0011 9 6 6.7090 -0.5508 -0.0043 10 6 7.9638 -1.0549 0.0015 11 6 8.3329 -2.5160 0.0020 12 7 8.8269 -0.0172 0.0010 13 6 10.2887 -0.1138 0.0011 14 6 10.7900 -0.1478 -1.4197 15 1 10.0899 -0.1016 -2.2406 16 6 12.1427 -0.2368 -1.6714 17 7 12.5803 -0.2659 -2.9113 18 14 13.3538 -0.3160 -0.2515 19 1 13.5829 -1.7340 0.1253 20 1 14.6404 0.3008 -0.6633 21 1 12.8011 0.4224 0.9124 22 7 8.0806 1.1681 0.0007 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.2886 2.4295 0.0004 27 1 3.5731 3.2610 0.0009 28 1 5.9026 2.7058 0.0009 29 1 5.7935 -1.1238 -0.0100 30 1 8.4222 -2.8679 1.0298 31 1 9.2847 -2.6504 -0.5120 32 1 7.5589 -3.0865 -0.5115 33 1 10.7099 0.7506 0.5144 34 1 10.5925 -1.0255 0.5155 35 1 13.5319 -0.3289 -3.0885 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767935839.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:59 Heat of formation + Delta-G solvation = 48.358456 kcal Electronic energy + Delta-G solvation = -18962.303084 eV Core-core repulsion = 15895.538199 eV Total energy + Delta-G solvation = -3066.764886 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.31071 -40.75966 -36.37611 -35.21808 -34.07462 -33.04736 -32.78000 -29.80097 -29.07461 -27.87566 -25.84260 -24.15493 -21.97357 -21.24935 -20.53478 -19.22964 -18.65745 -17.75945 -17.19200 -16.59271 -16.43927 -16.07192 -15.61534 -15.41795 -15.08721 -14.82007 -14.44260 -14.36026 -13.97213 -13.88013 -13.73602 -13.63693 -13.25261 -12.85657 -12.65918 -12.55090 -12.29044 -11.84274 -11.79238 -11.54085 -11.45676 -11.32435 -10.89276 -10.09690 -9.58272 -9.13754 -8.50833 -8.40391 -6.51762 -0.01385 0.76012 1.06220 1.33562 1.35435 1.43151 1.49517 1.68042 1.79977 2.27090 2.48048 2.52906 2.91805 3.73952 3.96920 4.11406 4.38919 4.39897 4.45325 4.46333 4.54775 4.74069 4.77853 4.84714 4.90508 4.98306 4.99466 5.02678 5.15041 5.23539 5.32126 5.90578 6.02727 6.32438 6.39089 6.52494 7.00383 7.12344 7.17990 8.76391 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.040922 B = 0.003343 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.070068 B = 8372.723642 C = 8639.702953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 S -0.048 6.048 3 C -0.065 4.065 4 C -0.230 4.230 5 C 0.537 3.463 6 O -0.528 6.528 7 N -0.624 5.624 8 C 0.276 3.724 9 C -0.297 4.297 10 C 0.088 3.912 11 C -0.088 4.088 12 N -0.345 5.345 13 C 0.242 3.758 14 C -0.551 4.551 15 H 0.022 0.978 16 C 0.021 3.979 17 N -0.938 5.938 18 Si 0.952 3.048 19 H -0.250 1.250 20 H -0.278 1.278 21 H -0.245 1.245 22 N -0.360 5.360 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.105 0.895 26 H 0.187 0.813 27 H 0.178 0.822 28 H 0.424 0.576 29 H 0.168 0.832 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.164 2.535 9.801 24.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.369 4.369 2 S 0.197 5.803 3 C -0.201 4.201 4 C -0.266 4.266 5 C 0.330 3.670 6 O -0.409 6.409 7 N -0.273 5.273 8 C 0.022 3.978 9 C -0.328 4.328 10 C -0.042 4.042 11 C -0.146 4.146 12 N -0.127 5.127 13 C 0.122 3.878 14 C -0.589 4.589 15 H 0.041 0.959 16 C -0.179 4.179 17 N -0.576 5.576 18 Si 0.773 3.227 19 H -0.174 1.174 20 H -0.203 1.203 21 H -0.168 1.168 22 N -0.190 5.190 23 H 0.112 0.888 24 H 0.110 0.890 25 H 0.124 0.876 26 H 0.204 0.796 27 H 0.195 0.805 28 H 0.262 0.738 29 H 0.185 0.815 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.645 1.606 9.684 22.860 hybrid contribution -0.381 1.196 -0.254 1.280 sum -21.025 2.801 9.430 23.213 Atomic orbital electron populations 1.24179 0.98628 1.07613 1.06434 1.88067 1.03248 1.03447 1.85512 1.26451 1.00636 0.99320 0.93685 1.21384 0.90292 1.01435 1.13505 1.17827 0.82770 0.89402 0.76965 1.90627 1.82830 1.17579 1.49860 1.42523 1.02623 1.09301 1.72833 1.19372 0.87545 0.90746 1.00176 1.21471 0.97610 0.92387 1.21297 1.21772 0.89691 0.93444 0.99284 1.20537 1.03255 0.86332 1.04450 1.48419 1.06907 1.02044 1.55325 1.19752 0.71725 0.99312 0.96967 1.21264 0.93081 1.53419 0.91173 0.95933 1.25851 0.99894 0.93004 0.99107 1.70036 1.15922 1.50054 1.21634 0.85662 0.77764 0.80398 0.78917 1.17351 1.20294 1.16827 1.77162 1.01961 1.07900 1.32003 0.88801 0.88967 0.87625 0.79602 0.80466 0.73785 0.81505 0.88030 0.91380 0.88373 0.93335 0.91025 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.16 10.48 113.37 1.19 -0.97 16 2 S -0.05 -0.98 19.25 -56.49 -1.09 -2.07 16 3 C -0.06 -0.97 10.08 67.10 0.68 -0.30 16 4 C -0.23 -4.14 9.82 22.29 0.22 -3.92 16 5 C 0.54 15.31 7.50 84.98 0.64 15.95 16 6 O -0.53 -18.11 10.45 -4.73 -0.05 -18.16 16 7 N -0.62 -19.46 5.44 -315.84 -1.72 -21.17 16 8 C 0.28 11.48 8.11 133.34 1.08 12.56 16 9 C -0.30 -12.39 9.52 22.11 0.21 -12.18 16 10 C 0.09 3.72 6.92 41.38 0.29 4.01 16 11 C -0.09 -2.89 9.89 71.24 0.70 -2.19 16 12 N -0.34 -16.52 3.59 -338.45 -1.22 -17.73 16 13 C 0.24 11.83 4.88 85.64 0.42 12.25 16 14 C -0.55 -32.26 9.94 25.60 0.25 -32.00 16 15 H 0.02 1.53 8.06 -2.91 -0.02 1.51 16 16 C 0.02 1.20 5.47 84.66 0.46 1.66 16 17 N -0.94 -57.76 13.96 21.45 0.30 -57.46 16 18 Si 0.95 41.29 27.47 68.60 1.88 43.18 16 19 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 20 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 21 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 22 N -0.36 -17.03 12.59 -54.47 -0.69 -17.72 16 23 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.09 0.76 8.14 -2.40 -0.02 0.74 16 25 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.19 1.15 8.03 -2.91 -0.02 1.13 16 27 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 28 H 0.42 10.42 8.78 -92.71 -0.81 9.61 16 29 H 0.17 6.75 5.90 -2.91 -0.02 6.73 16 30 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.07 2.45 7.71 -2.39 -0.02 2.43 16 32 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 33 H 0.05 2.35 7.20 -2.39 -0.02 2.34 16 34 H 0.07 3.09 7.07 -2.39 -0.02 3.07 16 35 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -78.44 315.95 3.81 -74.63 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.24 Total: 21.63 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 6.14 Total: -5.13 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -3.32 Total: -114.08 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.05 Total: -18.16 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.88 Total: 43.18 kcal Atomic # 16 Polarization: -0.98 SS G_CDS: -1.09 Total: -2.07 kcal Total: -78.44 3.81 -74.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767935839.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.993 kcal (2) G-P(sol) polarization free energy of solvation -78.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds