Wall clock time and date at job start Tue Mar 31 2020 05:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 7 12 12 O 1.21590 * 120.00297 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.47021 * 125.65051 * 359.69426 * 13 11 10 15 15 C 1.54311 * 107.27317 * 180.96765 * 14 13 11 16 16 C 1.55151 * 102.86729 * 22.52642 * 15 14 13 17 17 H 1.09002 * 111.00398 * 82.37381 * 16 15 14 18 18 C 1.50693 * 111.00544 * 206.22771 * 16 15 14 19 19 N 1.29033 * 124.91852 * 233.64831 * 18 16 15 20 20 C 1.31783 * 117.12583 * 179.97438 * 19 18 16 21 21 C 1.33635 * 114.50115 * 359.97438 * 20 19 18 22 22 S 1.70979 * 124.91644 * 53.34543 * 18 16 15 23 23 C 1.47423 * 125.64261 * 179.97438 * 13 11 10 24 24 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 28 28 H 1.08993 * 109.88119 * 300.51438 * 14 13 11 29 29 H 1.09000 * 109.88086 * 61.67552 * 14 13 11 30 30 H 1.09006 * 110.92348 * 264.10689 * 15 14 13 31 31 H 1.09002 * 110.58958 * 140.78617 * 15 14 13 32 32 H 1.07998 * 122.75172 * 180.02562 * 20 19 18 33 33 H 1.08002 * 126.03921 * 180.02562 * 21 20 19 34 34 H 1.08998 * 110.37140 * 274.67070 * 23 13 11 35 35 H 1.09001 * 110.37146 * 36.89266 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 5.3248 -2.8218 -0.0001 12 8 6.1150 -1.8977 0.0004 13 7 5.7739 -4.0926 -0.0008 14 6 4.9331 -5.2986 0.0049 15 6 5.8798 -6.5170 0.0267 16 6 7.1899 -5.9263 0.6114 17 1 7.1475 -5.8833 1.6997 18 6 8.3899 -6.7126 0.1503 19 7 9.2804 -7.2263 0.9302 20 6 10.2688 -7.8864 0.3609 21 6 10.2084 -7.9325 -0.9733 22 16 8.7647 -7.0595 -1.4814 23 6 7.1898 -4.5033 -0.0014 24 1 -0.4850 0.8401 -0.0004 25 1 3.8751 -0.6798 -0.8895 26 1 3.8745 -0.6810 0.8905 27 1 3.3694 -3.3127 -0.0009 28 1 4.2986 -5.3039 0.8911 29 1 4.3177 -5.3257 -0.8943 30 1 6.0450 -6.8996 -0.9806 31 1 5.4849 -7.2977 0.6769 32 1 11.0621 -8.3526 0.9263 33 1 10.9173 -8.4218 -1.6249 34 1 7.5770 -4.5287 -1.0200 35 1 7.7821 -3.8243 0.6120 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883656094.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:30 Heat of formation + Delta-G solvation = 21.661175 kcal Electronic energy + Delta-G solvation = -19049.609992 eV Core-core repulsion = 15981.687425 eV Total energy + Delta-G solvation = -3067.922567 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.29238 -39.58167 -37.47172 -34.28404 -32.84219 -32.11350 -30.19494 -29.03765 -27.71675 -25.33715 -23.50432 -21.88455 -21.40809 -20.44847 -19.55435 -18.42572 -17.81282 -16.54880 -16.40664 -15.59334 -15.30868 -14.76937 -14.63732 -14.51250 -13.98812 -13.65432 -13.39223 -13.22305 -12.89869 -12.68344 -12.33650 -12.05600 -11.89274 -11.78304 -11.63340 -11.08061 -10.97203 -10.74790 -9.95426 -9.95066 -9.71150 -9.63741 -9.45150 -9.16997 -8.76979 -8.56474 -7.98798 -6.19845 -4.21733 0.36687 1.03459 1.45111 2.50312 2.93123 3.29189 3.36118 3.45119 3.68902 3.82859 4.22059 4.30789 4.35641 4.69677 4.78496 4.85904 4.95288 5.05722 5.10274 5.15872 5.20238 5.46768 5.58091 5.67892 5.76144 5.80935 5.88843 6.31606 6.78247 7.12305 7.26425 7.39309 7.42269 7.54738 8.26251 8.65842 8.79975 9.17047 9.41436 10.92102 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.046954 B = 0.003182 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.179984 B = 8797.282835 C = 9041.327214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.718 5.718 11 C 0.715 3.285 12 O -0.598 6.598 13 N -0.643 5.643 14 C 0.101 3.899 15 C -0.121 4.121 16 C -0.032 4.032 17 H 0.118 0.882 18 C 0.064 3.936 19 N -0.473 5.473 20 C 0.039 3.961 21 C -0.266 4.266 22 S 0.134 5.866 23 C 0.139 3.861 24 H 0.267 0.733 25 H 0.019 0.981 26 H 0.024 0.976 27 H 0.393 0.607 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.176 0.824 33 H 0.177 0.823 34 H 0.064 0.936 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.001 -18.982 -2.123 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.115 3.885 10 N -0.370 5.370 11 C 0.416 3.584 12 O -0.477 6.477 13 N -0.384 5.384 14 C -0.023 4.023 15 C -0.160 4.160 16 C -0.055 4.055 17 H 0.136 0.864 18 C -0.214 4.214 19 N -0.187 5.187 20 C -0.112 4.112 21 C -0.405 4.405 22 S 0.388 5.612 23 C 0.013 3.987 24 H 0.077 0.923 25 H 0.037 0.963 26 H 0.042 0.958 27 H 0.226 0.774 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.193 0.807 33 H 0.195 0.805 34 H 0.082 0.918 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 16.829 -17.739 -2.509 24.580 hybrid contribution 0.829 -0.042 0.442 0.940 sum 17.657 -17.781 -2.067 25.144 Atomic orbital electron populations 1.69879 1.06209 1.27417 1.49545 1.24775 0.94784 0.99155 0.93879 0.86814 0.80629 0.83177 0.79073 1.19841 1.20938 1.18403 1.21077 0.88494 0.95189 1.53226 0.90307 1.19391 0.94871 0.77497 0.96724 1.45404 1.03439 1.11139 1.77043 1.15611 0.83668 0.80830 0.78270 1.90879 1.55508 1.42089 1.59214 1.47494 1.06400 1.04171 1.80300 1.21972 0.93932 0.83855 1.02534 1.22807 0.93502 0.97669 1.02012 1.21024 0.88703 0.93121 1.02638 0.86443 1.26772 0.99838 1.01940 0.92807 1.66276 1.02892 1.11119 1.38443 1.21816 0.98018 0.99868 0.91528 1.27167 1.03876 1.09731 0.99716 1.84142 1.18883 1.47576 1.10573 1.21975 0.83424 0.92828 1.00461 0.92271 0.96289 0.95830 0.77362 0.90895 0.90906 0.90195 0.88987 0.80703 0.80530 0.91764 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.57 27.47 -169.99 -4.67 16.91 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.54 -14.93 9.83 -34.44 -0.34 -15.27 16 8 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 9 C 0.24 5.96 4.50 -5.19 -0.02 5.94 16 10 N -0.72 -15.10 5.51 -66.41 -0.37 -15.46 16 11 C 0.71 14.55 8.49 -86.91 -0.74 13.81 16 12 O -0.60 -14.51 16.60 5.29 0.09 -14.42 16 13 N -0.64 -9.72 3.33 -176.23 -0.59 -10.30 16 14 C 0.10 1.10 6.14 -3.07 -0.02 1.08 16 15 C -0.12 -1.02 6.39 -24.91 -0.16 -1.18 16 16 C -0.03 -0.32 3.53 -89.61 -0.32 -0.64 16 17 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 18 C 0.06 0.66 6.26 -13.46 -0.08 0.57 16 19 N -0.47 -5.26 10.54 -11.87 -0.13 -5.38 16 20 C 0.04 0.34 11.35 -19.19 -0.22 0.12 16 21 C -0.27 -1.96 11.37 29.12 0.33 -1.63 16 22 S 0.13 1.13 21.78 -107.50 -2.34 -1.21 16 23 C 0.14 1.78 6.36 -2.52 -0.02 1.76 16 24 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 26 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 27 H 0.39 7.28 7.31 -40.82 -0.30 6.98 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.61 7.30 -51.93 -0.38 0.23 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.18 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.18 0.81 8.06 -52.49 -0.42 0.38 16 34 H 0.06 0.79 7.50 -51.93 -0.39 0.40 16 35 H 0.09 1.22 8.03 -51.93 -0.42 0.80 16 LS Contribution 309.38 15.07 4.66 4.66 Total: -1.00 -33.98 309.38 -8.61 -42.59 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -4.37 Total: 1.72 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -1.68 Total: 6.67 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.30 Total: -56.91 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.09 Total: -14.42 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.91 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.34 Total: -1.21 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.98 -8.61 -42.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883656094.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.246 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds