Wall clock time and date at job start Tue Mar 31 2020 05:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 7 12 12 O 1.21590 * 120.00297 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.47021 * 125.65051 * 359.69426 * 13 11 10 15 15 C 1.54311 * 107.27317 * 180.96765 * 14 13 11 16 16 C 1.55151 * 102.86729 * 22.52642 * 15 14 13 17 17 H 1.09002 * 111.00398 * 82.37381 * 16 15 14 18 18 C 1.50693 * 111.00544 * 206.22771 * 16 15 14 19 19 N 1.29033 * 124.91852 * 233.64831 * 18 16 15 20 20 C 1.31783 * 117.12583 * 179.97438 * 19 18 16 21 21 C 1.33635 * 114.50115 * 359.97438 * 20 19 18 22 22 S 1.70979 * 124.91644 * 53.34543 * 18 16 15 23 23 C 1.47423 * 125.64261 * 179.97438 * 13 11 10 24 24 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 28 28 H 1.08993 * 109.88119 * 300.51438 * 14 13 11 29 29 H 1.09000 * 109.88086 * 61.67552 * 14 13 11 30 30 H 1.09006 * 110.92348 * 264.10689 * 15 14 13 31 31 H 1.09002 * 110.58958 * 140.78617 * 15 14 13 32 32 H 1.07998 * 122.75172 * 180.02562 * 20 19 18 33 33 H 1.08002 * 126.03921 * 180.02562 * 21 20 19 34 34 H 1.08998 * 110.37140 * 274.67070 * 23 13 11 35 35 H 1.09001 * 110.37146 * 36.89266 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 5.3248 -2.8218 -0.0001 12 8 6.1150 -1.8977 0.0004 13 7 5.7739 -4.0926 -0.0008 14 6 4.9331 -5.2986 0.0049 15 6 5.8798 -6.5170 0.0267 16 6 7.1899 -5.9263 0.6114 17 1 7.1475 -5.8833 1.6997 18 6 8.3899 -6.7126 0.1503 19 7 9.2804 -7.2263 0.9302 20 6 10.2688 -7.8864 0.3609 21 6 10.2084 -7.9325 -0.9733 22 16 8.7647 -7.0595 -1.4814 23 6 7.1898 -4.5033 -0.0014 24 1 -0.4850 0.8401 -0.0004 25 1 3.8751 -0.6798 -0.8895 26 1 3.8745 -0.6810 0.8905 27 1 3.3694 -3.3127 -0.0009 28 1 4.2986 -5.3039 0.8911 29 1 4.3177 -5.3257 -0.8943 30 1 6.0450 -6.8996 -0.9806 31 1 5.4849 -7.2977 0.6769 32 1 11.0621 -8.3526 0.9263 33 1 10.9173 -8.4218 -1.6249 34 1 7.5770 -4.5287 -1.0200 35 1 7.7821 -3.8243 0.6120 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883656094.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:29 Heat of formation + Delta-G solvation = -2.823837 kcal Electronic energy + Delta-G solvation = -19050.671742 eV Core-core repulsion = 15981.687425 eV Total energy + Delta-G solvation = -3068.984316 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.40111 -40.56507 -38.71795 -36.17590 -34.52349 -33.56112 -31.06767 -30.18878 -29.32966 -26.28025 -24.71840 -23.58873 -22.32051 -21.15011 -21.11083 -19.70865 -18.78495 -18.31160 -17.53925 -16.98809 -16.48407 -16.32972 -15.83730 -15.45856 -15.17755 -14.87476 -14.54874 -14.51145 -14.26298 -14.12242 -13.89279 -13.42971 -13.02193 -12.71390 -12.68522 -12.52088 -12.43355 -11.91855 -11.84156 -11.64504 -11.33637 -10.90687 -10.65195 -10.38966 -10.14400 -9.82308 -9.49788 -8.38775 -6.45471 -0.29106 0.39394 0.80939 1.34508 1.36341 1.50010 1.58944 1.85748 2.12702 2.29979 2.96774 3.01736 3.15923 3.44344 3.55248 3.99744 4.17716 4.22972 4.26319 4.42625 4.55397 4.59725 4.69934 4.74768 4.78478 4.92393 5.05037 5.08598 5.18648 5.22807 5.31837 5.52031 5.98418 6.21062 6.55836 6.76429 7.06491 7.19389 7.58897 8.75861 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.046954 B = 0.003182 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.179984 B = 8797.282835 C = 9041.327214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.028 3.972 3 Si 0.936 3.064 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.251 3.749 10 N -0.717 5.717 11 C 0.712 3.288 12 O -0.642 6.642 13 N -0.637 5.637 14 C 0.092 3.908 15 C -0.107 4.107 16 C -0.021 4.021 17 H 0.113 0.887 18 C 0.043 3.957 19 N -0.500 5.500 20 C 0.018 3.982 21 C -0.251 4.251 22 S 0.148 5.852 23 C 0.135 3.865 24 H 0.273 0.727 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.405 0.595 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.116 0.884 32 H 0.197 0.803 33 H 0.207 0.793 34 H 0.072 0.928 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.266 -20.533 -2.745 27.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.172 4.172 3 Si 0.760 3.240 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.078 0.922 9 C 0.127 3.873 10 N -0.370 5.370 11 C 0.414 3.586 12 O -0.525 6.525 13 N -0.376 5.376 14 C -0.030 4.030 15 C -0.146 4.146 16 C -0.044 4.044 17 H 0.131 0.869 18 C -0.234 4.234 19 N -0.215 5.215 20 C -0.132 4.132 21 C -0.390 4.390 22 S 0.402 5.598 23 C 0.010 3.990 24 H 0.082 0.918 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.240 0.760 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.134 0.866 32 H 0.213 0.787 33 H 0.224 0.776 34 H 0.090 0.910 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.095 -19.369 -3.130 26.691 hybrid contribution 0.497 0.300 0.605 0.839 sum 18.591 -19.069 -2.525 26.751 Atomic orbital electron populations 1.69973 1.07612 1.28620 1.50679 1.25550 0.95527 1.02550 0.93571 0.85875 0.79243 0.79387 0.79498 1.18918 1.19759 1.18601 1.21239 0.89693 0.94633 1.52657 0.92162 1.18981 0.93182 0.79575 0.95560 1.45098 1.04262 1.10036 1.77637 1.15686 0.82840 0.82097 0.78020 1.90837 1.56351 1.44210 1.61108 1.47436 1.08195 1.03578 1.78353 1.22298 0.94290 0.82950 1.03465 1.22811 0.91683 0.96803 1.03285 1.20837 0.89962 0.91358 1.02220 0.86930 1.26658 1.00008 1.02877 0.93840 1.66261 1.03654 1.11788 1.39748 1.22197 0.98257 1.00315 0.92395 1.27563 1.03457 1.08323 0.99659 1.84072 1.19370 1.47280 1.09098 1.22107 0.81762 0.94265 1.00840 0.91808 0.97204 0.97199 0.75962 0.90126 0.89859 0.88880 0.86575 0.78666 0.77565 0.91029 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.53 13.96 21.45 0.30 -55.23 16 2 C 0.03 1.62 5.47 84.66 0.46 2.08 16 3 Si 0.94 44.46 27.47 68.60 1.88 46.34 16 4 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.26 -12.44 6.54 99.48 0.65 -11.79 16 7 C -0.54 -30.28 9.83 25.60 0.25 -30.03 16 8 H 0.06 3.50 7.84 -2.91 -0.02 3.47 16 9 C 0.25 12.68 4.50 85.63 0.38 13.07 16 10 N -0.72 -30.19 5.51 -482.28 -2.66 -32.85 16 11 C 0.71 29.09 8.49 179.05 1.52 30.61 16 12 O -0.64 -31.71 16.60 -4.00 -0.07 -31.78 16 13 N -0.64 -18.86 3.33 -829.73 -2.76 -21.62 16 14 C 0.09 1.84 6.14 86.72 0.53 2.37 16 15 C -0.11 -1.53 6.39 31.78 0.20 -1.33 16 16 C -0.02 -0.40 3.53 -10.14 -0.04 -0.43 16 17 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 18 C 0.04 0.82 6.26 88.52 0.55 1.37 16 19 N -0.50 -10.39 10.54 -191.45 -2.02 -12.41 16 20 C 0.02 0.28 11.35 83.66 0.95 1.23 16 21 C -0.25 -2.99 11.37 66.77 0.76 -2.23 16 22 S 0.15 2.15 21.78 -56.49 -1.23 0.92 16 23 C 0.13 3.41 6.36 86.87 0.55 3.96 16 24 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 25 H 0.01 0.52 7.57 -2.39 -0.02 0.51 16 26 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 27 H 0.40 14.88 7.31 -92.71 -0.68 14.20 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.09 1.13 7.30 -2.38 -0.02 1.11 16 31 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.20 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.21 1.08 8.06 -2.91 -0.02 1.06 16 34 H 0.07 1.71 7.50 -2.39 -0.02 1.69 16 35 H 0.06 1.91 8.03 -2.39 -0.02 1.89 16 Total: -1.00 -73.65 309.38 -0.03 -73.69 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.38 Total: 12.27 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 6.13 Total: 20.67 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -7.14 Total: -122.11 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.07 Total: -31.78 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.88 Total: 46.34 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -1.23 Total: 0.92 kcal Total: -73.65 -0.03 -73.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883656094.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.864 kcal (2) G-P(sol) polarization free energy of solvation -73.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds