Wall clock time and date at job start Tue Mar 31 2020 05:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.47429 * 2 1 4 4 N 1.29867 * 125.54556 * 90.01754 * 3 2 1 5 5 N 1.26252 * 117.78601 * 180.02562 * 4 3 2 6 6 C 1.30763 * 116.25098 * 0.02562 * 5 4 3 7 7 C 1.47309 * 126.18692 * 179.97438 * 6 5 4 8 8 O 1.21617 * 119.99549 * 174.77111 * 7 6 5 9 9 N 1.34774 * 120.00376 * 354.77100 * 7 6 5 10 10 C 1.46503 * 120.00283 * 185.56863 * 9 7 6 11 11 C 1.52998 * 109.47183 * 185.19427 * 10 9 7 12 12 C 1.50701 * 115.54684 * 57.84421 * 11 10 9 13 13 H 1.08004 * 120.00134 * 264.63523 * 12 11 10 14 14 C 1.37875 * 120.00098 * 84.63595 * 12 11 10 15 15 N 1.31511 * 120.00145 * 1.96402 * 14 12 11 16 16 Si 1.86798 * 120.00022 * 181.96215 * 14 12 11 17 17 H 1.48501 * 109.47200 * 89.99973 * 16 14 12 18 18 H 1.48505 * 109.47193 * 210.00011 * 16 14 12 19 19 H 1.48496 * 109.47339 * 329.99892 * 16 14 12 20 20 C 1.52992 * 117.49979 * 272.17440 * 11 10 9 21 21 C 1.52998 * 117.49806 * 203.51026 * 11 10 9 22 22 S 1.71273 * 125.54460 * 270.02411 * 3 2 1 23 23 H 1.08997 * 109.46849 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47120 * 300.00485 * 1 2 3 25 25 H 1.08994 * 109.46629 * 60.00174 * 1 2 3 26 26 H 1.08997 * 109.47120 * 239.99515 * 2 1 3 27 27 H 1.09012 * 109.46706 * 119.99932 * 2 1 3 28 28 H 0.97000 * 119.99674 * 5.57020 * 9 7 6 29 29 H 1.09000 * 109.47098 * 305.20126 * 10 9 7 30 30 H 1.09006 * 109.46678 * 65.19395 * 10 9 7 31 31 H 0.97001 * 120.00461 * 185.02044 * 15 14 12 32 32 H 1.08995 * 117.50085 * 359.97438 * 20 11 10 33 33 H 1.09002 * 117.49974 * 145.02506 * 20 11 10 34 34 H 1.08998 * 117.50019 * 214.98280 * 21 11 10 35 35 H 1.08999 * 117.49859 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.2845 2.1324 1.0567 5 7 2.7010 3.3120 0.8862 6 6 2.8380 3.7035 -0.3539 7 6 3.3045 5.0270 -0.8017 8 8 3.4807 5.2410 -1.9858 9 7 3.5361 6.0008 0.1009 10 6 3.8817 7.3510 -0.3506 11 6 4.2180 8.2233 0.8605 12 6 5.3413 7.7216 1.7309 13 1 5.1221 7.1330 2.6096 14 6 6.6488 8.0139 1.4056 15 7 6.9141 8.7629 0.3577 16 14 8.0436 7.3463 2.4535 17 1 8.4692 6.0245 1.9272 18 1 9.1904 8.2889 2.4102 19 1 7.5803 7.1947 3.8562 20 6 3.0624 8.9522 1.5489 21 6 4.0682 9.7378 0.7037 22 16 2.3639 2.3597 -1.3936 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8901 28 1 3.4739 5.8077 1.0494 29 1 4.7449 7.3023 -1.0144 30 1 3.0359 7.7827 -0.8858 31 1 7.8338 8.9087 0.0859 32 1 2.0625 8.8106 1.1387 33 1 3.1147 9.0693 2.6313 34 1 4.7818 10.3714 1.2304 35 1 3.7304 10.1128 -0.2624 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907935600.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:57 Heat of formation + Delta-G solvation = 42.227669 kcal Electronic energy + Delta-G solvation = -19135.559474 eV Core-core repulsion = 16068.528738 eV Total energy + Delta-G solvation = -3067.030736 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.22593 -39.09460 -36.74212 -34.82812 -33.51825 -31.98307 -30.75990 -27.58299 -26.12990 -25.18541 -23.82310 -21.96473 -21.14925 -19.72144 -19.20076 -19.13662 -17.32835 -16.13761 -15.99393 -15.22403 -14.99566 -14.71267 -14.46539 -14.41470 -13.93622 -13.49359 -13.11907 -12.94195 -12.74565 -12.16166 -11.98135 -11.66550 -11.61483 -10.99632 -10.93537 -10.80685 -10.54606 -10.43797 -10.26309 -9.91663 -9.87198 -9.81376 -9.52262 -9.08846 -8.53144 -8.42905 -8.13724 -6.09274 -4.18254 -0.02637 0.65193 1.19346 2.17446 3.27735 3.30323 3.35057 3.37719 3.42212 3.90882 4.36333 4.44944 4.56454 4.76635 4.91447 5.14334 5.20375 5.30254 5.40398 5.42704 5.55680 5.78044 5.96487 6.26595 6.39802 6.44738 6.66519 6.74476 7.05063 7.07583 7.33139 7.47950 7.81051 7.97923 8.30437 8.37023 8.52055 8.83866 9.49777 10.98806 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022061 B = 0.004339 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.924451 B = 6451.301747 C = 6910.483988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.043 4.043 3 C -0.013 4.013 4 N -0.266 5.266 5 N -0.212 5.212 6 C -0.035 4.035 7 C 0.585 3.415 8 O -0.538 6.538 9 N -0.665 5.665 10 C 0.160 3.840 11 C 0.022 3.978 12 C -0.499 4.499 13 H 0.062 0.938 14 C 0.075 3.925 15 N -0.875 5.875 16 Si 0.889 3.111 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.211 4.211 21 C -0.141 4.141 22 S 0.210 5.790 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.413 0.587 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.262 0.738 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.112 -14.656 -2.967 18.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.085 4.085 3 C -0.290 4.290 4 N -0.106 5.106 5 N -0.055 5.055 6 C -0.314 4.314 7 C 0.364 3.636 8 O -0.415 6.415 9 N -0.313 5.313 10 C 0.037 3.963 11 C 0.022 3.978 12 C -0.537 4.537 13 H 0.080 0.920 14 C -0.129 4.129 15 N -0.511 5.511 16 Si 0.716 3.284 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.248 4.248 21 C -0.179 4.179 22 S 0.454 5.546 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.109 0.891 27 H 0.119 0.881 28 H 0.250 0.750 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.799 -14.249 -3.577 18.233 hybrid contribution 0.935 -0.382 1.023 1.438 sum -9.864 -14.631 -2.554 17.829 Atomic orbital electron populations 1.21804 0.92966 1.02967 1.03023 1.20209 0.97021 0.86257 1.04972 1.29537 1.02729 1.04119 0.92589 1.71315 1.13179 0.99131 1.27002 1.72063 1.10519 1.06190 1.16684 1.30025 1.06946 1.02131 0.92324 1.16541 0.79488 0.81256 0.86280 1.90838 1.53763 1.80940 1.16001 1.45809 1.65181 1.10109 1.10197 1.21194 0.98611 0.78894 0.97569 1.19017 0.94278 0.90558 0.93989 1.20369 0.89338 1.34065 1.09922 0.92020 1.24966 0.98694 0.93948 0.95329 1.69982 1.19625 1.36115 1.25373 0.86638 0.81937 0.78799 0.80994 1.20635 1.21181 1.19708 1.23065 0.93569 1.09738 0.98423 1.22476 1.00446 0.96341 0.98656 1.84753 1.56143 1.04017 1.09674 0.90926 0.91648 0.92182 0.89050 0.88079 0.75048 0.90270 0.93835 0.92856 0.91603 0.90197 0.89466 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.90 37.16 0.37 -0.56 16 2 C -0.04 -0.31 6.53 -27.88 -0.18 -0.50 16 3 C -0.01 -0.15 6.79 -13.11 -0.09 -0.24 16 4 N -0.27 -4.07 11.59 32.65 0.38 -3.69 16 5 N -0.21 -3.66 11.38 32.94 0.37 -3.28 16 6 C -0.03 -0.58 7.58 -14.32 -0.11 -0.69 16 7 C 0.59 11.53 7.80 -12.57 -0.10 11.43 16 8 O -0.54 -11.69 16.96 5.26 0.09 -11.60 16 9 N -0.66 -13.57 5.37 -61.42 -0.33 -13.90 16 10 C 0.16 3.57 5.57 -4.04 -0.02 3.54 16 11 C 0.02 0.52 1.51 -155.67 -0.23 0.29 16 12 C -0.50 -12.96 8.38 -34.44 -0.29 -13.24 16 13 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 14 C 0.07 1.99 5.43 -17.82 -0.10 1.90 16 15 N -0.87 -24.19 12.73 55.43 0.71 -23.48 16 16 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 C -0.21 -4.37 9.94 -26.70 -0.27 -4.63 16 21 C -0.14 -3.18 9.26 -26.69 -0.25 -3.43 16 22 S 0.21 2.63 23.13 -107.50 -2.49 0.14 16 23 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 28 H 0.41 8.24 7.95 -40.82 -0.32 7.92 16 29 H 0.08 1.99 8.09 -51.93 -0.42 1.57 16 30 H 0.04 0.91 8.11 -51.93 -0.42 0.49 16 31 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 34 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 35 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 324.25 15.07 4.89 4.89 Total: -1.00 -29.82 324.25 -7.18 -37.00 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -4.52 Total: 4.16 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -1.26 Total: -6.14 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 1.13 Total: -44.35 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -2.49 Total: 0.14 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.82 -7.18 -37.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907935600.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.229 kcal (2) G-P(sol) polarization free energy of solvation -29.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds