Wall clock time and date at job start Tue Mar 31 2020 05:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.47429 * 2 1 4 4 N 1.29867 * 125.54556 * 90.01754 * 3 2 1 5 5 N 1.26252 * 117.78601 * 180.02562 * 4 3 2 6 6 C 1.30763 * 116.25098 * 0.02562 * 5 4 3 7 7 C 1.47309 * 126.18692 * 179.97438 * 6 5 4 8 8 O 1.21617 * 119.99549 * 174.77111 * 7 6 5 9 9 N 1.34774 * 120.00376 * 354.77100 * 7 6 5 10 10 C 1.46503 * 120.00283 * 185.56863 * 9 7 6 11 11 C 1.52998 * 109.47183 * 185.19427 * 10 9 7 12 12 C 1.50701 * 115.54684 * 57.84421 * 11 10 9 13 13 H 1.08004 * 120.00134 * 264.63523 * 12 11 10 14 14 C 1.37875 * 120.00098 * 84.63595 * 12 11 10 15 15 N 1.31511 * 120.00145 * 1.96402 * 14 12 11 16 16 Si 1.86798 * 120.00022 * 181.96215 * 14 12 11 17 17 H 1.48501 * 109.47200 * 89.99973 * 16 14 12 18 18 H 1.48505 * 109.47193 * 210.00011 * 16 14 12 19 19 H 1.48496 * 109.47339 * 329.99892 * 16 14 12 20 20 C 1.52992 * 117.49979 * 272.17440 * 11 10 9 21 21 C 1.52998 * 117.49806 * 203.51026 * 11 10 9 22 22 S 1.71273 * 125.54460 * 270.02411 * 3 2 1 23 23 H 1.08997 * 109.46849 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47120 * 300.00485 * 1 2 3 25 25 H 1.08994 * 109.46629 * 60.00174 * 1 2 3 26 26 H 1.08997 * 109.47120 * 239.99515 * 2 1 3 27 27 H 1.09012 * 109.46706 * 119.99932 * 2 1 3 28 28 H 0.97000 * 119.99674 * 5.57020 * 9 7 6 29 29 H 1.09000 * 109.47098 * 305.20126 * 10 9 7 30 30 H 1.09006 * 109.46678 * 65.19395 * 10 9 7 31 31 H 0.97001 * 120.00461 * 185.02044 * 15 14 12 32 32 H 1.08995 * 117.50085 * 359.97438 * 20 11 10 33 33 H 1.09002 * 117.49974 * 145.02506 * 20 11 10 34 34 H 1.08998 * 117.50019 * 214.98280 * 21 11 10 35 35 H 1.08999 * 117.49859 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.2845 2.1324 1.0567 5 7 2.7010 3.3120 0.8862 6 6 2.8380 3.7035 -0.3539 7 6 3.3045 5.0270 -0.8017 8 8 3.4807 5.2410 -1.9858 9 7 3.5361 6.0008 0.1009 10 6 3.8817 7.3510 -0.3506 11 6 4.2180 8.2233 0.8605 12 6 5.3413 7.7216 1.7309 13 1 5.1221 7.1330 2.6096 14 6 6.6488 8.0139 1.4056 15 7 6.9141 8.7629 0.3577 16 14 8.0436 7.3463 2.4535 17 1 8.4692 6.0245 1.9272 18 1 9.1904 8.2889 2.4102 19 1 7.5803 7.1947 3.8562 20 6 3.0624 8.9522 1.5489 21 6 4.0682 9.7378 0.7037 22 16 2.3639 2.3597 -1.3936 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8901 28 1 3.4739 5.8077 1.0494 29 1 4.7449 7.3023 -1.0144 30 1 3.0359 7.7827 -0.8858 31 1 7.8338 8.9087 0.0859 32 1 2.0625 8.8106 1.1387 33 1 3.1147 9.0693 2.6313 34 1 4.7818 10.3714 1.2304 35 1 3.7304 10.1128 -0.2624 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907935600.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:56 Heat of formation + Delta-G solvation = 22.408455 kcal Electronic energy + Delta-G solvation = -19136.418900 eV Core-core repulsion = 16068.528738 eV Total energy + Delta-G solvation = -3067.890162 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.38613 -40.66908 -38.51922 -35.63426 -35.11746 -33.99004 -31.85812 -28.81764 -27.79421 -26.95656 -24.70592 -23.20178 -22.84045 -21.41709 -20.70799 -20.25547 -18.76827 -17.86716 -17.23228 -16.87077 -16.65495 -16.07227 -15.90021 -15.58734 -15.08028 -14.75308 -14.59376 -14.39780 -13.88098 -13.57174 -13.47770 -12.94462 -12.86127 -12.73162 -12.40063 -12.27616 -12.04186 -11.95069 -11.63145 -11.37405 -11.21285 -11.00803 -10.98248 -10.85873 -10.44439 -10.20361 -9.91316 -8.12720 -6.25241 -1.15607 -0.43258 0.12359 0.97253 1.38967 1.41879 1.49730 1.85872 2.02164 2.40758 2.83235 3.16144 3.30248 3.50841 3.72978 4.01721 4.21221 4.23380 4.29261 4.50055 4.62985 4.66383 4.72713 4.92648 4.97795 5.01959 5.04254 5.28021 5.31907 5.35672 5.54155 5.67428 5.75446 6.34287 6.39194 6.81509 6.92799 7.24893 7.44515 8.94897 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022061 B = 0.004339 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.924451 B = 6451.301747 C = 6910.483988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.007 3.993 4 N -0.297 5.297 5 N -0.226 5.226 6 C -0.079 4.079 7 C 0.589 3.411 8 O -0.565 6.565 9 N -0.668 5.668 10 C 0.174 3.826 11 C -0.002 4.002 12 C -0.505 4.505 13 H 0.057 0.943 14 C 0.029 3.971 15 N -0.903 5.903 16 Si 0.943 3.057 17 H -0.283 1.283 18 H -0.285 1.285 19 H -0.266 1.266 20 C -0.181 4.181 21 C -0.147 4.147 22 S 0.271 5.729 23 H 0.098 0.902 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.123 0.877 27 H 0.112 0.888 28 H 0.415 0.585 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.259 0.741 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.505 -16.993 -2.922 21.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.268 4.268 4 N -0.138 5.138 5 N -0.070 5.070 6 C -0.358 4.358 7 C 0.371 3.629 8 O -0.445 6.445 9 N -0.317 5.317 10 C 0.051 3.949 11 C -0.003 4.003 12 C -0.543 4.543 13 H 0.075 0.925 14 C -0.172 4.172 15 N -0.540 5.540 16 Si 0.769 3.231 17 H -0.210 1.210 18 H -0.211 1.211 19 H -0.191 1.191 20 C -0.218 4.218 21 C -0.185 4.185 22 S 0.516 5.484 23 H 0.117 0.883 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.141 0.859 27 H 0.130 0.870 28 H 0.251 0.749 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.204 -16.597 -3.522 20.900 hybrid contribution 1.275 0.184 0.982 1.620 sum -10.929 -16.414 -2.540 19.882 Atomic orbital electron populations 1.21828 0.91802 1.04555 1.02405 1.20604 0.97774 0.83417 1.07038 1.30396 0.99474 1.05296 0.91680 1.71320 1.15146 0.98970 1.28315 1.72044 1.10304 1.07325 1.17335 1.29497 1.10063 1.02432 0.93838 1.16776 0.78420 0.82072 0.85681 1.90806 1.54883 1.81811 1.16974 1.45720 1.65678 1.09848 1.10430 1.20840 0.97569 0.79976 0.96526 1.19058 0.95373 0.91102 0.94780 1.20634 0.90307 1.33408 1.09904 0.92474 1.25605 1.00770 0.94458 0.96323 1.70082 1.19724 1.37447 1.26782 0.85789 0.79553 0.77878 0.79862 1.20968 1.21058 1.19063 1.23057 0.93860 1.06531 0.98357 1.22399 1.01021 0.95558 0.99534 1.84505 1.54383 1.01310 1.08236 0.88282 0.93170 0.91948 0.85923 0.87019 0.74855 0.93957 0.92552 0.93140 0.88970 0.89947 0.91706 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.90 71.98 0.71 -0.61 16 2 C -0.05 -0.51 6.53 29.85 0.20 -0.32 16 3 C 0.01 0.15 6.79 88.40 0.60 0.75 16 4 N -0.30 -8.70 11.59 -50.60 -0.59 -9.29 16 5 N -0.23 -7.72 11.38 -49.69 -0.57 -8.29 16 6 C -0.08 -2.66 7.58 87.24 0.66 -2.00 16 7 C 0.59 23.50 7.80 86.63 0.68 24.18 16 8 O -0.57 -24.94 16.96 -4.09 -0.07 -25.01 16 9 N -0.67 -27.73 5.37 -466.48 -2.50 -30.23 16 10 C 0.17 7.90 5.57 86.38 0.48 8.39 16 11 C 0.00 -0.11 1.51 -52.93 -0.08 -0.19 16 12 C -0.50 -26.48 8.38 25.60 0.21 -26.27 16 13 H 0.06 2.98 7.81 -2.91 -0.02 2.96 16 14 C 0.03 1.59 5.43 84.65 0.46 2.05 16 15 N -0.90 -51.06 12.73 21.45 0.27 -50.79 16 16 Si 0.94 43.50 29.54 68.60 2.03 45.52 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 C -0.18 -7.28 9.94 30.62 0.30 -6.98 16 21 C -0.15 -6.63 9.26 30.62 0.28 -6.35 16 22 S 0.27 6.24 23.13 -56.49 -1.31 4.93 16 23 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 24 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.41 16.81 7.95 -92.71 -0.74 16.07 16 29 H 0.04 2.21 8.09 -2.39 -0.02 2.19 16 30 H 0.06 2.36 8.11 -2.38 -0.02 2.34 16 31 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 32 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.06 3.19 8.14 -2.39 -0.02 3.17 16 35 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -65.47 324.25 2.15 -63.32 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.38 Total: 17.17 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 4.51 Total: -7.34 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -3.38 Total: -98.59 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.07 Total: -25.01 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 6.24 SS G_CDS: -1.31 Total: 4.93 kcal Total: -65.47 2.15 -63.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907935600.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.731 kcal (2) G-P(sol) polarization free energy of solvation -65.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds