Wall clock time and date at job start Tue Mar 31 2020 05:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50692 * 120.00114 * 2 1 4 4 N 1.46498 * 109.47174 * 125.00222 * 3 2 1 5 5 C 1.46502 * 120.00001 * 267.89812 * 4 3 2 6 6 C 1.50699 * 109.47455 * 263.66543 * 5 4 3 7 7 H 1.07998 * 119.99799 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00306 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00385 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 120.00040 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47062 * 90.00104 * 10 8 6 12 12 H 1.48499 * 109.47074 * 210.00264 * 10 8 6 13 13 H 1.48498 * 109.47200 * 330.00466 * 10 8 6 14 14 C 1.34772 * 120.00136 * 87.89611 * 4 3 2 15 15 O 1.21611 * 120.00228 * 4.35452 * 14 4 3 16 16 C 1.47314 * 120.00057 * 184.34760 * 14 4 3 17 17 N 1.30761 * 126.18952 * 353.84857 * 16 14 4 18 18 N 1.26255 * 116.25326 * 180.02562 * 17 16 14 19 19 C 1.29859 * 117.78274 * 359.97438 * 18 17 16 20 20 C 1.50700 * 125.54298 * 179.97438 * 19 18 17 21 21 C 1.53009 * 109.46740 * 90.03338 * 20 19 18 22 22 S 1.71277 * 108.91166 * 0.02562 * 19 18 17 23 23 H 1.08000 * 119.99760 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.00371 * 179.97438 * 1 2 3 25 25 H 1.07991 * 119.99549 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.47331 * 5.00138 * 3 2 1 27 27 H 1.09005 * 109.47022 * 244.99888 * 3 2 1 28 28 H 1.09001 * 109.46758 * 23.66116 * 5 4 3 29 29 H 1.08996 * 109.47425 * 143.65791 * 5 4 3 30 30 H 0.97000 * 120.00654 * 180.02562 * 9 8 6 31 31 H 1.09004 * 109.47317 * 210.02762 * 20 19 18 32 32 H 1.09003 * 109.47251 * 330.03395 * 20 19 18 33 33 H 1.08998 * 109.46622 * 180.02562 * 21 20 19 34 34 H 1.09004 * 109.46745 * 299.99774 * 21 20 19 35 35 H 1.08995 * 109.47483 * 60.00002 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5738 1.9069 2.4116 6 6 3.0390 3.3378 2.4964 7 1 3.5925 3.7750 1.6785 8 6 2.7588 4.0885 3.6183 9 7 3.1652 5.3371 3.6925 10 14 1.8020 3.3322 5.0333 11 1 2.7479 2.7067 5.9921 12 1 1.0228 4.3901 5.7253 13 1 0.8747 2.2985 4.5072 14 6 4.2360 0.8273 0.9945 15 8 4.6119 0.4222 -0.0888 16 6 5.1387 0.7667 2.1571 17 7 4.9054 1.2666 3.3426 18 7 5.8134 1.1061 4.2050 19 6 6.8847 0.4668 3.8443 20 6 8.0715 0.1779 4.7269 21 6 7.8678 -1.1648 5.4318 22 16 6.7299 0.0069 2.2017 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5401 -0.9353 -0.0004 25 1 1.8499 -0.9353 0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6214 1.4025 -0.9314 28 1 1.4869 1.8733 2.4858 29 1 3.0116 1.3335 3.2287 30 1 2.9684 5.8652 4.4820 31 1 8.9750 0.1355 4.1186 32 1 8.1714 0.9677 5.4715 33 1 8.7260 -1.3736 6.0705 34 1 6.9643 -1.1224 6.0401 35 1 7.7679 -1.9546 4.6873 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908343934.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:58 Heat of formation + Delta-G solvation = 63.339844 kcal Electronic energy + Delta-G solvation = -19868.744561 eV Core-core repulsion = 16802.629317 eV Total energy + Delta-G solvation = -3066.115244 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.85725 -39.16667 -35.74046 -34.57319 -33.47713 -32.15853 -30.33913 -28.10837 -27.17513 -25.42245 -23.56456 -22.61720 -21.29150 -19.89839 -18.81837 -18.46356 -16.97755 -16.38371 -15.83057 -15.55927 -14.97562 -14.58554 -14.39724 -14.16381 -13.89209 -13.34191 -13.08119 -12.92581 -12.57045 -12.31601 -11.93119 -11.85272 -11.63029 -11.39690 -11.16294 -10.93268 -10.62024 -10.37033 -10.16752 -9.69807 -9.60480 -9.49263 -9.44855 -9.42870 -9.14913 -8.51501 -7.93176 -6.05664 -4.03942 0.36813 1.02970 1.55793 2.39704 2.60513 3.34902 3.39035 3.44415 3.51377 3.69156 4.20072 4.45626 4.70193 4.82410 5.02680 5.18023 5.23027 5.29614 5.34663 5.41974 5.62181 5.64696 5.81033 5.82849 6.00676 6.03247 6.17162 6.41880 6.76842 6.87392 6.95539 7.25458 7.58369 7.89284 8.39042 8.55532 8.89366 8.95703 9.55281 11.07432 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.012537 B = 0.008044 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.828320 B = 3480.231052 C = 4974.863376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.160 4.160 3 C 0.142 3.858 4 N -0.556 5.556 5 C 0.195 3.805 6 C -0.520 4.520 7 H 0.072 0.928 8 C 0.085 3.915 9 N -0.896 5.896 10 Si 0.871 3.129 11 H -0.267 1.267 12 H -0.288 1.288 13 H -0.267 1.267 14 C 0.599 3.401 15 O -0.554 6.554 16 C -0.035 4.035 17 N -0.157 5.157 18 N -0.268 5.268 19 C -0.009 4.009 20 C -0.043 4.043 21 C -0.147 4.147 22 S 0.171 5.829 23 H 0.099 0.901 24 H 0.095 0.905 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.033 0.967 29 H 0.063 0.937 30 H 0.264 0.736 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.202 -13.222 -0.581 14.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.180 4.180 3 C 0.020 3.980 4 N -0.285 5.285 5 C 0.074 3.926 6 C -0.558 4.558 7 H 0.090 0.910 8 C -0.118 4.118 9 N -0.535 5.535 10 Si 0.697 3.303 11 H -0.192 1.192 12 H -0.214 1.214 13 H -0.192 1.192 14 C 0.382 3.618 15 O -0.434 6.434 16 C -0.314 4.314 17 N 0.001 4.999 18 N -0.108 5.108 19 C -0.286 4.286 20 C -0.084 4.084 21 C -0.206 4.206 22 S 0.414 5.586 23 H 0.118 0.882 24 H 0.114 0.886 25 H 0.124 0.876 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.202 -13.084 -0.817 14.104 hybrid contribution -0.543 0.015 0.941 1.087 sum 4.660 -13.069 0.125 13.875 Atomic orbital electron populations 1.23820 0.95696 1.01818 1.01152 1.23357 0.96161 0.99105 0.99331 1.20607 0.92051 0.95308 0.90059 1.47824 1.10584 1.55252 1.14815 1.20403 0.96061 0.95814 0.80339 1.21097 1.36701 0.93634 1.04377 0.91003 1.24692 0.95106 0.94426 0.97583 1.69887 1.46259 1.08068 1.29254 0.86929 0.80525 0.79164 0.83637 1.19222 1.21439 1.19202 1.16495 0.81483 0.78901 0.84931 1.90770 1.75614 1.51300 1.25683 1.29673 0.98136 1.04421 0.99184 1.72570 1.19145 1.11381 0.96774 1.71483 0.98042 1.13936 1.27351 1.29519 1.01094 1.00495 0.97461 1.20177 0.91089 0.99967 0.97176 1.21788 1.02969 0.95163 1.00681 1.84468 1.14766 1.51461 1.07889 0.88226 0.88649 0.87581 0.88939 0.89301 0.94873 0.91932 0.92626 0.89310 0.88165 0.91174 0.91703 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.46 14.32 29.01 0.42 -2.04 16 2 C -0.16 -2.45 9.83 -36.03 -0.35 -2.81 16 3 C 0.14 2.54 5.83 -5.20 -0.03 2.51 16 4 N -0.56 -11.88 2.46 -177.75 -0.44 -12.32 16 5 C 0.19 4.62 3.82 -5.19 -0.02 4.60 16 6 C -0.52 -14.45 9.02 -34.44 -0.31 -14.76 16 7 H 0.07 2.23 8.06 -52.49 -0.42 1.81 16 8 C 0.08 2.43 5.47 -17.82 -0.10 2.34 16 9 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 10 Si 0.87 21.65 27.47 -169.99 -4.67 16.98 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 14 C 0.60 12.91 7.59 -12.57 -0.10 12.81 16 15 O -0.55 -12.12 16.57 5.27 0.09 -12.03 16 16 C -0.04 -0.73 7.28 -14.32 -0.10 -0.84 16 17 N -0.16 -3.55 7.51 32.94 0.25 -3.31 16 18 N -0.27 -5.47 11.59 32.66 0.38 -5.09 16 19 C -0.01 -0.14 6.79 -13.11 -0.09 -0.23 16 20 C -0.04 -0.45 6.53 -27.88 -0.18 -0.64 16 21 C -0.15 -1.32 9.90 37.16 0.37 -0.95 16 22 S 0.17 2.67 23.13 -107.50 -2.49 0.18 16 23 H 0.10 1.25 7.84 -52.49 -0.41 0.84 16 24 H 0.10 1.07 8.06 -52.49 -0.42 0.65 16 25 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 26 H 0.09 1.59 7.71 -51.93 -0.40 1.19 16 27 H 0.09 1.56 7.43 -51.93 -0.39 1.18 16 28 H 0.03 0.77 7.08 -51.93 -0.37 0.40 16 29 H 0.06 1.53 4.74 -51.93 -0.25 1.29 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 317.83 15.07 4.79 4.79 Total: -1.00 -33.03 317.83 -6.18 -39.21 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -4.36 Total: -1.80 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -0.50 Total: 0.00 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.96 Total: -47.33 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -2.49 Total: 0.18 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.03 -6.18 -39.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908343934.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.551 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds