Wall clock time and date at job start Tue Mar 31 2020 05:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00004 * 2 1 4 4 H 1.48505 * 109.47301 * 272.91803 * 3 2 1 5 5 H 1.48507 * 109.47294 * 32.91572 * 3 2 1 6 6 H 1.48497 * 109.47330 * 152.91932 * 3 2 1 7 7 C 1.38809 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00246 * 339.36191 * 7 2 1 9 9 N 1.36940 * 119.99679 * 159.36626 * 7 2 1 10 10 C 1.46928 * 120.62627 * 152.59179 * 9 7 2 11 11 C 1.53196 * 108.77537 * 126.41079 * 10 9 7 12 12 C 1.53043 * 109.31029 * 54.63273 * 11 10 9 13 13 C 1.53038 * 109.53796 * 298.63137 * 12 11 10 14 14 H 1.08996 * 109.53090 * 301.40228 * 13 12 11 15 15 N 1.46497 * 109.50018 * 181.31574 * 13 12 11 16 16 C 1.34770 * 120.00430 * 155.16044 * 15 13 12 17 17 O 1.21690 * 119.99757 * 0.02562 * 16 15 13 18 18 C 1.46689 * 120.00372 * 180.02562 * 16 15 13 19 19 C 1.35667 * 126.12920 * 180.02562 * 18 16 15 20 20 N 1.30943 * 114.18647 * 179.72741 * 19 18 16 21 21 C 1.29425 * 117.36645 * 0.27204 * 20 19 18 22 22 S 1.70957 * 110.39165 * 359.97438 * 21 20 19 23 23 C 1.46917 * 120.63134 * 332.60827 * 9 7 2 24 24 H 0.97001 * 119.99652 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.58232 * 246.19471 * 10 9 7 26 26 H 1.08996 * 109.59127 * 6.48254 * 10 9 7 27 27 H 1.08997 * 109.50013 * 174.58192 * 11 10 9 28 28 H 1.08995 * 109.49810 * 294.68355 * 11 10 9 29 29 H 1.09006 * 109.45995 * 178.61328 * 12 11 10 30 30 H 1.08999 * 109.46148 * 58.65705 * 12 11 10 31 31 H 0.97010 * 119.99980 * 335.16671 * 15 13 12 32 32 H 1.07996 * 122.90350 * 359.97438 * 19 18 16 33 33 H 1.08002 * 124.80476 * 180.02562 * 21 20 19 34 34 H 1.09002 * 109.58719 * 113.80099 * 23 9 7 35 35 H 1.08999 * 109.59309 * 353.38055 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4360 2.0821 -1.3983 5 1 1.4799 2.6341 0.7608 6 1 3.5773 1.4232 0.6374 7 6 2.0103 -1.2021 0.0005 8 1 1.5223 -2.1073 0.3306 9 7 3.3138 -1.2403 -0.4174 10 6 4.2351 -2.2627 0.0971 11 6 4.8757 -2.9907 -1.0889 12 6 5.5296 -1.9659 -2.0185 13 6 4.4629 -1.0100 -2.5576 14 1 3.7004 -1.5781 -3.0904 15 7 5.0847 -0.0489 -3.4719 16 6 4.3458 0.5450 -4.4299 17 8 3.1621 0.2832 -4.5352 18 6 4.9685 1.5070 -5.3457 19 6 4.3457 2.1745 -6.3492 20 7 5.1262 2.9835 -7.0207 21 6 6.3682 3.0460 -6.6620 22 16 6.6601 2.0005 -5.3412 23 6 3.8176 -0.2596 -1.3883 24 1 -0.4850 0.8401 -0.0004 25 1 5.0114 -1.7867 0.6962 26 1 3.6845 -2.9750 0.7115 27 1 5.6322 -3.6854 -0.7238 28 1 4.1095 -3.5406 -1.6352 29 1 6.0075 -2.4832 -2.8505 30 1 6.2786 -1.3994 -1.4651 31 1 6.0282 0.1601 -3.3878 32 1 3.2961 2.0524 -6.5721 33 1 7.1144 3.6708 -7.1302 34 1 4.5598 0.3798 -0.9103 35 1 2.9911 0.3486 -1.7560 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006843048.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:24 Heat of formation + Delta-G solvation = 38.395039 kcal Electronic energy + Delta-G solvation = -19980.452149 eV Core-core repulsion = 16913.255217 eV Total energy + Delta-G solvation = -3067.196932 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.25874 -39.28425 -37.55420 -34.40648 -32.76597 -31.08601 -30.69804 -29.10760 -26.19074 -25.31631 -23.24964 -22.31157 -21.06002 -20.24805 -19.66062 -18.78918 -16.94743 -16.81596 -15.96590 -15.57640 -15.16948 -14.75961 -14.28835 -14.21413 -14.04697 -13.76607 -13.73444 -13.20357 -12.83671 -12.40377 -12.22892 -11.84828 -11.61675 -11.16134 -10.78057 -10.64484 -10.29704 -10.28128 -10.16913 -9.81589 -9.80273 -9.76291 -9.46745 -9.31803 -8.97016 -8.52795 -6.97893 -5.92813 -3.29354 0.04595 0.93626 1.31592 2.33027 3.11987 3.23242 3.38356 3.48539 3.51377 4.02313 4.56165 4.73965 4.88736 5.01238 5.08489 5.17902 5.22415 5.43717 5.47277 5.77264 5.86243 5.90332 5.98857 6.16324 6.23087 6.39332 6.45365 6.58066 6.61911 6.73299 6.89399 7.30368 7.54127 7.96617 8.24132 8.35084 8.94341 9.73776 10.09123 11.22949 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019466 B = 0.005816 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.083194 B = 4812.927580 C = 5636.487401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.030 3.970 3 Si 0.878 3.122 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.271 1.271 7 C -0.265 4.265 8 H 0.088 0.912 9 N -0.600 5.600 10 C 0.145 3.855 11 C -0.132 4.132 12 C -0.117 4.117 13 C 0.125 3.875 14 H 0.096 0.904 15 N -0.718 5.718 16 C 0.587 3.413 17 O -0.509 6.509 18 C -0.276 4.276 19 C 0.110 3.890 20 N -0.474 5.474 21 C 0.028 3.972 22 S 0.158 5.842 23 C 0.119 3.881 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.392 0.608 32 H 0.191 0.809 33 H 0.205 0.795 34 H 0.025 0.975 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.411 2.078 -10.401 21.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.170 4.170 3 Si 0.709 3.291 4 H -0.215 1.215 5 H -0.230 1.230 6 H -0.197 1.197 7 C -0.393 4.393 8 H 0.105 0.895 9 N -0.324 5.324 10 C 0.019 3.981 11 C -0.172 4.172 12 C -0.155 4.155 13 C 0.020 3.980 14 H 0.114 0.886 15 N -0.369 5.369 16 C 0.371 3.629 17 O -0.385 6.385 18 C -0.400 4.400 19 C -0.047 4.047 20 N -0.187 5.187 21 C -0.267 4.267 22 S 0.411 5.589 23 C -0.008 4.008 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.226 0.774 32 H 0.208 0.792 33 H 0.222 0.778 34 H 0.042 0.958 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 18.111 2.065 -10.295 20.935 hybrid contribution 0.103 1.197 -0.259 1.229 sum 18.214 3.262 -10.554 21.302 Atomic orbital electron populations 1.69832 1.05705 1.26595 1.52372 1.25250 0.95183 0.97517 0.99056 0.86999 0.80014 0.85039 0.77076 1.21476 1.23028 1.19662 1.18893 0.84984 0.94835 1.40605 0.89481 1.44279 1.08871 1.33648 1.45606 1.20996 0.92475 0.91361 0.93271 1.22001 0.99681 0.97332 0.98159 1.21692 0.97346 0.97353 0.99093 1.21876 0.95536 0.89804 0.90749 0.88640 1.46054 1.12541 1.45196 1.33101 1.16746 0.86282 0.80011 0.79909 1.90930 1.14231 1.62022 1.71283 1.25993 0.97263 1.09926 1.06834 1.22309 1.01660 0.90668 0.90046 1.66259 1.03124 1.20198 1.29122 1.28790 0.96987 1.02333 0.98597 1.83883 1.07513 1.36597 1.30921 1.21709 0.97803 0.92427 0.88827 0.92708 0.95881 0.91542 0.92015 0.91538 0.92326 0.92023 0.77448 0.79243 0.77839 0.95759 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.59 13.97 55.49 0.78 -27.81 16 2 C 0.03 0.89 5.23 -17.43 -0.09 0.79 16 3 Si 0.88 23.40 24.35 -169.99 -4.14 19.26 16 4 H -0.29 -7.70 6.62 56.52 0.37 -7.33 16 5 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 6 H -0.27 -6.96 6.64 56.52 0.38 -6.59 16 7 C -0.27 -7.58 10.03 -15.06 -0.15 -7.73 16 8 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 9 N -0.60 -14.43 2.77 -172.32 -0.48 -14.91 16 10 C 0.14 2.76 6.52 -3.71 -0.02 2.73 16 11 C -0.13 -2.02 6.08 -26.61 -0.16 -2.18 16 12 C -0.12 -1.67 5.35 -26.69 -0.14 -1.82 16 13 C 0.13 2.28 2.60 -67.81 -0.18 2.10 16 14 H 0.10 1.98 7.58 -51.93 -0.39 1.59 16 15 N -0.72 -11.12 5.08 -55.00 -0.28 -11.40 16 16 C 0.59 10.15 7.75 -12.85 -0.10 10.05 16 17 O -0.51 -11.13 16.53 5.20 0.09 -11.04 16 18 C -0.28 -3.78 6.48 -37.09 -0.24 -4.02 16 19 C 0.11 1.48 11.09 -18.85 -0.21 1.27 16 20 N -0.47 -5.74 10.51 -15.38 -0.16 -5.90 16 21 C 0.03 0.25 12.22 51.75 0.63 0.88 16 22 S 0.16 1.42 22.35 -107.50 -2.40 -0.98 16 23 C 0.12 2.69 3.78 -3.71 -0.01 2.68 16 24 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.39 4.67 7.79 -40.82 -0.32 4.36 16 32 H 0.19 2.51 8.06 -52.49 -0.42 2.09 16 33 H 0.21 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.02 0.54 7.08 -51.93 -0.37 0.17 16 35 H 0.08 2.11 4.50 -51.93 -0.23 1.87 16 LS Contribution 301.13 15.07 4.54 4.54 Total: -1.00 -35.17 301.13 -7.03 -42.20 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -4.30 Total: 1.30 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -0.68 Total: 4.75 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: -0.14 Total: -60.03 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -4.14 Total: 19.26 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.40 Total: -0.98 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.17 -7.03 -42.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006843048.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.594 kcal (2) G-P(sol) polarization free energy of solvation -35.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds