Wall clock time and date at job start Tue Mar 31 2020 05:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30944 * 122.90049 * 2 1 4 4 C 1.29428 * 117.36303 * 180.02562 * 3 2 1 5 5 S 1.70949 * 110.39044 * 0.02562 * 4 3 2 6 6 C 1.35655 * 122.90769 * 179.71071 * 2 1 3 7 7 C 1.46687 * 126.12940 * 359.97438 * 6 2 1 8 8 O 1.21693 * 120.00088 * 0.02562 * 7 6 2 9 9 N 1.34777 * 119.99990 * 180.02562 * 7 6 2 10 10 C 1.46503 * 120.00070 * 180.02562 * 9 7 6 11 11 H 1.09005 * 110.88473 * 328.87963 * 10 9 7 12 12 C 1.55153 * 111.00361 * 204.99617 * 10 9 7 13 13 C 1.54324 * 102.94262 * 277.42478 * 12 10 9 14 14 N 1.47022 * 107.27121 * 337.80886 * 13 12 10 15 15 C 1.36943 * 125.64635 * 178.98026 * 14 13 12 16 16 H 1.08000 * 119.99878 * 179.97438 * 15 14 13 17 17 C 1.38807 * 119.99809 * 359.97438 * 15 14 13 18 18 N 1.31609 * 120.00385 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99670 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47193 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47276 * 119.99868 * 19 17 15 22 22 H 1.48501 * 109.47312 * 239.99596 * 19 17 15 23 23 C 1.47423 * 108.70694 * 358.94270 * 14 13 12 24 24 H 1.08999 * 109.46995 * 90.02539 * 1 2 3 25 25 H 1.08994 * 109.46790 * 210.02226 * 1 2 3 26 26 H 1.08997 * 109.47305 * 330.02667 * 1 2 3 27 27 H 1.07996 * 124.80628 * 179.97438 * 4 3 2 28 28 H 0.96997 * 120.00074 * 359.97438 * 9 7 6 29 29 H 1.08991 * 110.72162 * 35.79237 * 12 10 9 30 30 H 1.08997 * 110.71624 * 159.06778 * 12 10 9 31 31 H 1.09001 * 109.87778 * 97.22576 * 13 12 10 32 32 H 1.08998 * 109.88429 * 218.39004 * 13 12 10 33 33 H 0.97001 * 120.00288 * 180.02562 * 18 17 15 34 34 H 1.09000 * 110.36446 * 265.29029 * 23 14 13 35 35 H 1.08993 * 110.37090 * 142.96822 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5066 0.9745 -0.0005 5 16 3.9448 -0.6778 -0.0018 6 6 2.2441 -1.1389 0.0058 7 6 1.7193 -2.5086 0.0132 8 8 0.5174 -2.6998 0.0142 9 7 2.5681 -3.5555 0.0189 10 6 2.0440 -4.9235 0.0258 11 1 1.0906 -4.9718 0.5521 12 6 3.0707 -5.9093 0.6434 13 6 4.0123 -6.2144 -0.5407 14 7 3.2703 -5.9206 -1.7754 15 6 3.7597 -6.0419 -3.0486 16 1 3.1319 -5.8008 -3.8937 17 6 5.0626 -6.4749 -3.2530 18 7 5.8278 -6.7683 -2.2232 19 14 5.7298 -6.6410 -4.9898 20 1 4.6777 -6.2534 -5.9636 21 1 6.9087 -5.7530 -5.1544 22 1 6.1335 -8.0494 -5.2325 23 6 1.9119 -5.4747 -1.4159 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 4.2057 1.7977 -0.0010 28 1 3.5261 -3.4031 0.0178 29 1 3.6174 -5.4360 1.4589 30 1 2.5752 -6.8177 0.9859 31 1 4.8987 -5.5826 -0.4816 32 1 4.3016 -7.2651 -0.5231 33 1 6.7384 -7.0704 -2.3661 34 1 1.2183 -6.3153 -1.4386 35 1 1.5788 -4.6887 -2.0936 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010324911.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:19 Heat of formation + Delta-G solvation = 15.246737 kcal Electronic energy + Delta-G solvation = -19786.481625 eV Core-core repulsion = 16718.280907 eV Total energy + Delta-G solvation = -3068.200717 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.46759 -40.40854 -38.78082 -35.48375 -33.74732 -32.87990 -31.12328 -29.74064 -28.54608 -26.45706 -25.99404 -23.45318 -21.97809 -21.43207 -20.53547 -19.44095 -18.89684 -17.75732 -17.42740 -16.67791 -16.54087 -16.11064 -15.72636 -15.31190 -15.12987 -14.86475 -14.57207 -14.02013 -13.87039 -13.59463 -13.50785 -13.39721 -12.90632 -12.82977 -12.36420 -12.31983 -12.09311 -11.99834 -11.83086 -11.61297 -11.21236 -10.75718 -10.73642 -10.64825 -10.16670 -9.86039 -8.86653 -7.85446 -5.19534 -0.79150 0.18417 0.57178 1.37299 1.45416 1.46476 1.56171 2.00691 2.11145 2.48838 3.17833 3.33845 3.65766 3.66664 3.84040 4.03090 4.05502 4.18445 4.30468 4.65528 4.69996 4.70045 4.76421 4.86042 4.88490 4.95743 5.02345 5.30076 5.44527 5.49897 5.66590 5.76357 6.19696 6.36734 6.55075 7.03355 7.11867 7.76870 8.40826 9.24752 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019754 B = 0.005080 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.072706 B = 5510.487932 C = 6107.847231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.138 3.862 3 N -0.500 5.500 4 C 0.051 3.949 5 S 0.195 5.805 6 C -0.327 4.327 7 C 0.596 3.404 8 O -0.555 6.555 9 N -0.698 5.698 10 C 0.140 3.860 11 H 0.111 0.889 12 C -0.134 4.134 13 C 0.183 3.817 14 N -0.621 5.621 15 C -0.240 4.240 16 H 0.073 0.927 17 C -0.057 4.057 18 N -0.945 5.945 19 Si 0.972 3.028 20 H -0.273 1.273 21 H -0.289 1.289 22 H -0.292 1.292 23 C 0.122 3.878 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.249 0.751 28 H 0.402 0.598 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.020 0.980 32 H 0.011 0.989 33 H 0.248 0.752 34 H 0.037 0.963 35 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.668 13.504 8.414 16.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.001 4.001 3 N -0.214 5.214 4 C -0.243 4.243 5 S 0.451 5.549 6 C -0.451 4.451 7 C 0.383 3.617 8 O -0.436 6.436 9 N -0.347 5.347 10 C 0.035 3.965 11 H 0.129 0.871 12 C -0.173 4.173 13 C 0.058 3.942 14 N -0.348 5.348 15 C -0.369 4.369 16 H 0.091 0.909 17 C -0.251 4.251 18 N -0.594 5.594 19 Si 0.801 3.199 20 H -0.197 1.197 21 H -0.216 1.216 22 H -0.219 1.219 23 C -0.005 4.005 24 H 0.099 0.901 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.265 0.735 28 H 0.237 0.763 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.038 0.962 32 H 0.029 0.971 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.523 13.307 8.310 16.079 hybrid contribution 0.265 -0.305 -1.190 1.257 sum -3.257 13.001 7.120 15.177 Atomic orbital electron populations 1.20629 0.85653 1.04476 1.03781 1.20965 0.99400 0.85188 0.94574 1.66208 1.05982 1.30823 1.18395 1.29490 0.95113 1.01325 0.98388 1.84174 1.03084 1.03351 1.64312 1.25450 0.98358 0.98405 1.22869 1.16886 0.85900 0.83095 0.75862 1.90731 1.15110 1.85556 1.52218 1.45746 1.09775 1.05587 1.73596 1.22071 0.98391 0.80033 0.96007 0.87111 1.23103 0.97141 0.99101 0.97950 1.20973 0.92328 0.97480 0.83428 1.44713 1.09578 1.78195 1.02286 1.19371 0.96042 1.37770 0.83765 0.90943 1.25492 0.96865 1.01823 1.00897 1.70140 1.07885 1.52161 1.29257 0.85108 0.77989 0.76928 0.79879 1.19736 1.21607 1.21888 1.22076 0.87453 0.96147 0.94776 0.90088 0.89392 0.89295 0.73546 0.76253 0.88914 0.88673 0.96185 0.97066 0.94286 0.94558 0.95406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.13 9.71 71.24 0.69 -1.44 16 2 C 0.14 3.72 6.79 42.09 0.29 4.01 16 3 N -0.50 -11.97 10.50 -190.40 -2.00 -13.97 16 4 C 0.05 0.90 12.22 130.60 1.60 2.50 16 5 S 0.20 4.14 22.35 -56.49 -1.26 2.88 16 6 C -0.33 -9.29 6.48 23.88 0.15 -9.13 16 7 C 0.60 19.69 7.78 86.45 0.67 20.37 16 8 O -0.56 -20.44 13.90 -4.33 -0.06 -20.50 16 9 N -0.70 -22.88 5.18 -439.89 -2.28 -25.16 16 10 C 0.14 4.78 3.43 46.38 0.16 4.94 16 11 H 0.11 3.49 7.54 -2.38 -0.02 3.47 16 12 C -0.13 -4.44 6.55 31.78 0.21 -4.23 16 13 C 0.18 8.43 5.36 86.73 0.47 8.89 16 14 N -0.62 -31.09 3.39 -691.99 -2.35 -33.43 16 15 C -0.24 -13.39 10.28 84.03 0.86 -12.52 16 16 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 17 C -0.06 -3.20 5.49 84.86 0.47 -2.73 16 18 N -0.95 -54.77 10.31 21.65 0.22 -54.55 16 19 Si 0.97 45.27 29.55 68.60 2.03 47.29 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 23 C 0.12 5.10 6.93 86.86 0.60 5.70 16 24 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.09 2.41 5.99 -2.39 -0.01 2.39 16 26 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.25 1.91 8.06 -2.91 -0.02 1.89 16 28 H 0.40 12.86 7.85 -92.71 -0.73 12.13 16 29 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.02 1.01 7.38 -2.39 -0.02 0.99 16 32 H 0.01 0.58 7.51 -2.39 -0.02 0.57 16 33 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -68.57 306.84 0.86 -67.71 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.39 Total: 13.38 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 6.16 Total: 16.35 kcal Atomic # 7 Polarization: -120.72 SS G_CDS: -6.40 Total: -127.12 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.06 Total: -20.50 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -1.26 Total: 2.88 kcal Total: -68.57 0.86 -67.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010324911.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.957 kcal (2) G-P(sol) polarization free energy of solvation -68.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds