Wall clock time and date at job start Tue Mar 31 2020 05:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30938 * 122.90624 * 2 1 4 4 C 1.29427 * 117.36624 * 179.97438 * 3 2 1 5 5 S 1.70950 * 110.39218 * 359.76290 * 4 3 2 6 6 C 1.35662 * 122.90407 * 179.97438 * 2 1 3 7 7 C 1.46686 * 126.13105 * 359.96637 * 6 2 1 8 8 O 1.21682 * 120.00009 * 0.02562 * 7 6 2 9 9 N 1.34773 * 119.99873 * 179.72110 * 7 6 2 10 10 C 1.46506 * 119.99969 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.88589 * 31.12049 * 10 9 7 12 12 C 1.55162 * 111.00505 * 155.00145 * 10 9 7 13 13 C 1.54324 * 102.94250 * 153.57743 * 12 10 9 14 14 N 1.47023 * 107.27049 * 337.80963 * 13 12 10 15 15 C 1.36933 * 125.64944 * 178.96240 * 14 13 12 16 16 H 1.08000 * 120.00133 * 179.97438 * 15 14 13 17 17 C 1.38812 * 119.99836 * 359.97008 * 15 14 13 18 18 N 1.31617 * 120.00209 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00136 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47035 * 59.99986 * 19 17 15 21 21 H 1.48501 * 109.47178 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47062 * 300.00449 * 19 17 15 23 23 C 1.47426 * 108.70692 * 358.93963 * 14 13 12 24 24 H 1.09002 * 109.47740 * 269.99949 * 1 2 3 25 25 H 1.08996 * 109.46940 * 30.00636 * 1 2 3 26 26 H 1.09005 * 109.46981 * 150.00417 * 1 2 3 27 27 H 1.08002 * 124.80481 * 180.02562 * 4 3 2 28 28 H 0.96998 * 120.00530 * 0.02562 * 9 7 6 29 29 H 1.08995 * 110.71752 * 271.94337 * 12 10 9 30 30 H 1.09001 * 110.71470 * 35.03881 * 12 10 9 31 31 H 1.09000 * 109.87826 * 97.22237 * 13 12 10 32 32 H 1.08999 * 109.88083 * 218.39565 * 13 12 10 33 33 H 0.97000 * 120.00127 * 179.97438 * 18 17 15 34 34 H 1.08999 * 110.36659 * 265.28949 * 23 14 13 35 35 H 1.08993 * 110.37279 * 142.96725 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0993 0.0000 4 6 3.5065 0.9744 0.0005 5 16 3.9447 -0.6780 0.0077 6 6 2.2439 -1.1390 0.0005 7 6 1.7191 -2.5087 0.0018 8 8 0.5174 -2.6998 0.0021 9 7 2.5679 -3.5556 -0.0035 10 6 2.0437 -4.9237 -0.0016 11 1 1.0878 -4.9742 -0.5228 12 6 3.0673 -5.9123 -0.6200 13 6 2.7054 -7.2519 0.0553 14 7 1.9929 -6.9341 1.3015 15 6 1.4829 -7.8479 2.1846 16 1 0.9742 -7.5118 3.0760 17 6 1.6198 -9.2063 1.9340 18 7 2.2401 -9.6160 0.8479 19 14 0.9235 -10.4531 3.1384 20 1 -0.5433 -10.2569 3.2612 21 1 1.2003 -11.8261 2.6448 22 1 1.5607 -10.2673 4.4669 23 6 1.9188 -5.4685 1.4432 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8901 -0.5138 27 1 4.2057 1.7975 0.0010 28 1 3.5259 -3.4033 -0.0078 29 1 2.9367 -5.9772 -1.7001 30 1 4.0869 -5.6161 -0.3733 31 1 2.0607 -7.8358 -0.6016 32 1 3.6136 -7.8111 0.2799 33 1 2.3361 -10.5653 0.6730 34 1 2.7418 -5.1047 2.0583 35 1 0.9623 -5.1771 1.8770 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010324912.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:21 Heat of formation + Delta-G solvation = 38.271729 kcal Electronic energy + Delta-G solvation = -19391.235751 eV Core-core repulsion = 16324.033473 eV Total energy + Delta-G solvation = -3067.202279 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.48554 -39.23180 -37.22230 -34.14371 -32.17815 -31.83111 -29.38973 -28.55488 -26.87589 -25.25494 -24.47827 -22.07530 -20.50221 -20.08203 -19.38700 -18.59341 -17.16470 -16.55260 -16.14589 -15.53093 -15.07015 -14.58442 -14.35545 -14.01884 -13.90039 -13.78149 -12.97634 -12.65495 -12.53745 -12.45946 -12.23841 -11.83413 -11.54514 -11.05975 -10.93118 -10.76599 -10.40788 -10.21275 -10.13672 -9.94812 -9.79898 -9.79177 -9.68537 -9.12189 -8.81762 -8.60711 -6.86029 -5.72464 -3.06257 0.02873 0.94543 1.31775 2.26773 3.12446 3.15929 3.41874 3.45855 3.47247 3.90356 4.50280 4.71988 4.77781 4.93990 5.24765 5.41756 5.56246 5.57445 5.61387 5.69708 5.72788 5.75546 6.09229 6.21969 6.27325 6.37931 6.52027 6.65007 6.89491 7.31728 7.49995 7.55118 7.56583 7.79494 8.18028 8.24478 9.20476 9.80267 10.44879 11.39383 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.036039 B = 0.003634 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.741321 B = 7702.595595 C = 8041.016514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.141 3.859 3 N -0.475 5.475 4 C 0.033 3.967 5 S 0.160 5.840 6 C -0.288 4.288 7 C 0.594 3.406 8 O -0.519 6.519 9 N -0.709 5.709 10 C 0.127 3.873 11 H 0.101 0.899 12 C -0.150 4.150 13 C 0.180 3.820 14 N -0.603 5.603 15 C -0.229 4.229 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.924 5.924 19 Si 0.914 3.086 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.129 3.871 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.205 0.795 28 H 0.395 0.605 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.253 0.747 34 H 0.020 0.980 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.361 19.491 -4.233 20.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.003 3.997 3 N -0.189 5.189 4 C -0.263 4.263 5 S 0.414 5.586 6 C -0.412 4.412 7 C 0.378 3.622 8 O -0.397 6.397 9 N -0.359 5.359 10 C 0.022 3.978 11 H 0.119 0.881 12 C -0.189 4.189 13 C 0.055 3.945 14 N -0.330 5.330 15 C -0.357 4.357 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.571 5.571 19 Si 0.744 3.256 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.002 3.998 24 H 0.100 0.900 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.222 0.778 28 H 0.229 0.771 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.037 0.963 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.281 19.104 -4.212 20.264 hybrid contribution -0.446 -0.440 0.650 0.902 sum 4.836 18.664 -3.562 19.607 Atomic orbital electron populations 1.20680 0.85814 1.04537 1.03882 1.20764 0.98862 0.84901 0.95125 1.66128 1.04905 1.31356 1.16528 1.28694 0.95318 1.00393 1.01867 1.83964 1.05705 1.03386 1.65521 1.25628 0.96050 0.99417 1.20134 1.16664 0.86364 0.82278 0.76880 1.90804 1.14156 1.84757 1.50024 1.45932 1.09129 1.06372 1.74454 1.22411 0.98480 0.77930 0.98956 0.88098 1.23202 0.97557 0.98083 1.00027 1.21153 0.96813 0.89662 0.86918 1.44376 1.66216 0.98930 1.23494 1.19031 1.29839 0.86115 1.00723 0.90395 1.24799 1.00767 0.96813 0.97958 1.69930 1.46991 1.14068 1.26119 0.86171 0.78772 0.80512 0.80140 1.21084 1.21568 1.21165 1.21819 0.98736 0.86158 0.93112 0.89991 0.90842 0.87967 0.77819 0.77130 0.91466 0.92033 0.93121 0.93490 0.93656 0.96277 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 9.69 36.00 0.35 -0.72 16 2 C 0.14 1.78 6.79 -83.90 -0.57 1.21 16 3 N -0.48 -5.47 10.50 -11.54 -0.12 -5.59 16 4 C 0.03 0.27 12.22 51.75 0.63 0.91 16 5 S 0.16 1.39 22.35 -107.50 -2.40 -1.01 16 6 C -0.29 -3.66 6.48 -37.09 -0.24 -3.90 16 7 C 0.59 9.11 7.78 -12.85 -0.10 9.01 16 8 O -0.52 -9.50 13.91 5.20 0.07 -9.43 16 9 N -0.71 -10.37 5.19 -53.02 -0.28 -10.64 16 10 C 0.13 2.28 3.43 -65.77 -0.23 2.05 16 11 H 0.10 1.98 7.53 -51.93 -0.39 1.59 16 12 C -0.15 -2.65 6.60 -24.89 -0.16 -2.81 16 13 C 0.18 4.26 5.37 -3.06 -0.02 4.25 16 14 N -0.60 -15.52 3.39 -170.07 -0.58 -16.10 16 15 C -0.23 -6.45 10.28 -15.06 -0.15 -6.61 16 16 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 17 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 18 N -0.92 -26.94 10.31 55.49 0.57 -26.37 16 19 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.13 2.77 6.93 -2.53 -0.02 2.75 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.10 1.36 6.01 -51.93 -0.31 1.04 16 27 H 0.21 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.39 4.75 7.75 -40.82 -0.32 4.43 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.97 8.00 -51.93 -0.42 0.55 16 31 H 0.05 1.33 7.38 -51.93 -0.38 0.95 16 32 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 33 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 306.67 15.07 4.62 4.62 Total: -1.00 -32.57 306.67 -8.03 -40.60 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -4.29 Total: 0.91 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -0.60 Total: 5.84 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.40 Total: -58.70 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.07 Total: -9.43 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.40 Total: -1.01 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.57 -8.03 -40.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010324912.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.871 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds