Wall clock time and date at job start Tue Mar 31 2020 05:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30938 * 122.90624 * 2 1 4 4 C 1.29427 * 117.36624 * 179.97438 * 3 2 1 5 5 S 1.70950 * 110.39218 * 359.76290 * 4 3 2 6 6 C 1.35662 * 122.90407 * 179.97438 * 2 1 3 7 7 C 1.46686 * 126.13105 * 359.96637 * 6 2 1 8 8 O 1.21682 * 120.00009 * 0.02562 * 7 6 2 9 9 N 1.34773 * 119.99873 * 179.72110 * 7 6 2 10 10 C 1.46506 * 119.99969 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.88589 * 31.12049 * 10 9 7 12 12 C 1.55162 * 111.00505 * 155.00145 * 10 9 7 13 13 C 1.54324 * 102.94250 * 153.57743 * 12 10 9 14 14 N 1.47023 * 107.27049 * 337.80963 * 13 12 10 15 15 C 1.36933 * 125.64944 * 178.96240 * 14 13 12 16 16 H 1.08000 * 120.00133 * 179.97438 * 15 14 13 17 17 C 1.38812 * 119.99836 * 359.97008 * 15 14 13 18 18 N 1.31617 * 120.00209 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00136 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47035 * 59.99986 * 19 17 15 21 21 H 1.48501 * 109.47178 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47062 * 300.00449 * 19 17 15 23 23 C 1.47426 * 108.70692 * 358.93963 * 14 13 12 24 24 H 1.09002 * 109.47740 * 269.99949 * 1 2 3 25 25 H 1.08996 * 109.46940 * 30.00636 * 1 2 3 26 26 H 1.09005 * 109.46981 * 150.00417 * 1 2 3 27 27 H 1.08002 * 124.80481 * 180.02562 * 4 3 2 28 28 H 0.96998 * 120.00530 * 0.02562 * 9 7 6 29 29 H 1.08995 * 110.71752 * 271.94337 * 12 10 9 30 30 H 1.09001 * 110.71470 * 35.03881 * 12 10 9 31 31 H 1.09000 * 109.87826 * 97.22237 * 13 12 10 32 32 H 1.08999 * 109.88083 * 218.39565 * 13 12 10 33 33 H 0.97000 * 120.00127 * 179.97438 * 18 17 15 34 34 H 1.08999 * 110.36659 * 265.28949 * 23 14 13 35 35 H 1.08993 * 110.37279 * 142.96725 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0993 0.0000 4 6 3.5065 0.9744 0.0005 5 16 3.9447 -0.6780 0.0077 6 6 2.2439 -1.1390 0.0005 7 6 1.7191 -2.5087 0.0018 8 8 0.5174 -2.6998 0.0021 9 7 2.5679 -3.5556 -0.0035 10 6 2.0437 -4.9237 -0.0016 11 1 1.0878 -4.9742 -0.5228 12 6 3.0673 -5.9123 -0.6200 13 6 2.7054 -7.2519 0.0553 14 7 1.9929 -6.9341 1.3015 15 6 1.4829 -7.8479 2.1846 16 1 0.9742 -7.5118 3.0760 17 6 1.6198 -9.2063 1.9340 18 7 2.2401 -9.6160 0.8479 19 14 0.9235 -10.4531 3.1384 20 1 -0.5433 -10.2569 3.2612 21 1 1.2003 -11.8261 2.6448 22 1 1.5607 -10.2673 4.4669 23 6 1.9188 -5.4685 1.4432 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8901 -0.5138 27 1 4.2057 1.7975 0.0010 28 1 3.5259 -3.4033 -0.0078 29 1 2.9367 -5.9772 -1.7001 30 1 4.0869 -5.6161 -0.3733 31 1 2.0607 -7.8358 -0.6016 32 1 3.6136 -7.8111 0.2799 33 1 2.3361 -10.5653 0.6730 34 1 2.7418 -5.1047 2.0583 35 1 0.9623 -5.1771 1.8770 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010324912.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:20 Heat of formation + Delta-G solvation = 14.903947 kcal Electronic energy + Delta-G solvation = -19392.249055 eV Core-core repulsion = 16324.033473 eV Total energy + Delta-G solvation = -3068.215582 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.48051 -40.38956 -38.83804 -35.72001 -33.86513 -32.89502 -31.14303 -29.81734 -28.41738 -26.46299 -25.96371 -23.31424 -22.11859 -21.75466 -20.49651 -19.43922 -18.97032 -17.73979 -17.45772 -16.71531 -16.55067 -16.11975 -15.88569 -15.31842 -15.08053 -14.64249 -14.55928 -14.20043 -13.99074 -13.72159 -13.52078 -13.41742 -12.97579 -12.74515 -12.45247 -12.36886 -12.13303 -12.08339 -11.82219 -11.61247 -11.24192 -10.75634 -10.71892 -10.65221 -10.20686 -9.84344 -8.93410 -7.87029 -5.23407 -0.79117 0.18610 0.55707 1.37706 1.45922 1.49304 1.55536 1.92878 2.04385 2.49859 3.18817 3.31650 3.61377 3.64190 3.86284 4.01352 4.04328 4.16634 4.21352 4.55133 4.67197 4.68478 4.74119 4.84361 4.86365 4.93737 5.01182 5.29450 5.40715 5.44831 5.62520 5.72554 6.17381 6.34547 6.57273 7.03262 7.08631 7.73424 8.36662 9.22799 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.036039 B = 0.003634 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.741321 B = 7702.595595 C = 8041.016514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.138 3.862 3 N -0.503 5.503 4 C 0.050 3.950 5 S 0.222 5.778 6 C -0.329 4.329 7 C 0.594 3.406 8 O -0.558 6.558 9 N -0.698 5.698 10 C 0.146 3.854 11 H 0.082 0.918 12 C -0.129 4.129 13 C 0.184 3.816 14 N -0.625 5.625 15 C -0.250 4.250 16 H 0.078 0.922 17 C -0.060 4.060 18 N -0.948 5.948 19 Si 0.980 3.020 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.276 1.276 23 C 0.128 3.872 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.249 0.751 28 H 0.411 0.589 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.015 0.985 32 H 0.019 0.981 33 H 0.249 0.751 34 H 0.031 0.969 35 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.165 21.523 -4.188 23.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.001 4.001 3 N -0.218 5.218 4 C -0.244 4.244 5 S 0.477 5.523 6 C -0.453 4.453 7 C 0.381 3.619 8 O -0.438 6.438 9 N -0.349 5.349 10 C 0.040 3.960 11 H 0.101 0.899 12 C -0.167 4.167 13 C 0.059 3.941 14 N -0.352 5.352 15 C -0.379 4.379 16 H 0.096 0.904 17 C -0.253 4.253 18 N -0.596 5.596 19 Si 0.807 3.193 20 H -0.206 1.206 21 H -0.216 1.216 22 H -0.202 1.202 23 C 0.001 3.999 24 H 0.099 0.901 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.265 0.735 28 H 0.248 0.752 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.034 0.966 32 H 0.037 0.963 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 7.132 21.180 -4.166 22.733 hybrid contribution -0.941 -0.953 0.654 1.490 sum 6.190 20.227 -3.512 21.443 Atomic orbital electron populations 1.20618 0.86302 1.04206 1.03732 1.20882 0.99175 0.85470 0.94569 1.66194 1.06235 1.30823 1.18527 1.29520 0.94952 1.01727 0.98233 1.83720 1.01680 1.02758 1.64125 1.25373 0.99171 0.97727 1.22990 1.17010 0.85865 0.83337 0.75716 1.90787 1.15893 1.85590 1.51564 1.45647 1.09945 1.04798 1.74496 1.21895 0.98119 0.79750 0.96194 0.89941 1.23019 0.98836 0.94140 1.00739 1.20945 0.94538 0.92458 0.86127 1.44656 1.66327 1.00513 1.23732 1.19391 1.29982 0.87177 1.01380 0.90449 1.25629 1.01389 0.98541 0.99784 1.70142 1.47948 1.13938 1.27572 0.85147 0.78140 0.77759 0.78232 1.20556 1.21620 1.20199 1.21924 0.98158 0.84226 0.95557 0.90059 0.89458 0.89902 0.73505 0.75246 0.89065 0.89022 0.96645 0.96302 0.94164 0.95099 0.95406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.13 9.69 71.24 0.69 -1.44 16 2 C 0.14 3.32 6.79 42.09 0.29 3.61 16 3 N -0.50 -10.29 10.50 -190.41 -2.00 -12.29 16 4 C 0.05 0.63 12.22 130.60 1.60 2.22 16 5 S 0.22 3.05 22.35 -56.49 -1.26 1.79 16 6 C -0.33 -7.84 6.48 23.88 0.15 -7.68 16 7 C 0.59 17.89 7.78 86.45 0.67 18.56 16 8 O -0.56 -20.90 13.91 -4.29 -0.06 -20.96 16 9 N -0.70 -19.33 5.19 -439.89 -2.28 -21.62 16 10 C 0.15 5.18 3.43 46.39 0.16 5.34 16 11 H 0.08 3.28 7.53 -2.39 -0.02 3.26 16 12 C -0.13 -4.37 6.60 31.78 0.21 -4.16 16 13 C 0.18 8.94 5.37 86.73 0.47 9.40 16 14 N -0.63 -32.88 3.39 -691.99 -2.35 -35.23 16 15 C -0.25 -14.44 10.28 84.03 0.86 -13.58 16 16 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 17 C -0.06 -3.45 5.49 84.86 0.47 -2.99 16 18 N -0.95 -56.76 10.31 21.65 0.22 -56.53 16 19 Si 0.98 46.21 29.55 68.60 2.03 48.24 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 23 C 0.13 5.52 6.93 86.86 0.60 6.12 16 24 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.08 2.29 6.01 -2.38 -0.01 2.28 16 27 H 0.25 0.69 8.06 -2.91 -0.02 0.67 16 28 H 0.41 8.69 7.75 -92.71 -0.72 7.98 16 29 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.09 2.59 8.00 -2.39 -0.02 2.57 16 31 H 0.02 0.84 7.38 -2.39 -0.02 0.82 16 32 H 0.02 1.00 7.51 -2.39 -0.02 0.99 16 33 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 34 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -73.58 306.67 0.86 -72.72 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 0.40 Total: 8.46 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 6.17 Total: 15.42 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -6.41 Total: -125.67 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.06 Total: -20.96 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.26 Total: 1.79 kcal Total: -73.58 0.86 -72.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010324912.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.626 kcal (2) G-P(sol) polarization free energy of solvation -73.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds