Wall clock time and date at job start Tue Mar 31 2020 05:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29519 * 121.53133 * 2 1 4 4 S 1.69483 * 107.84525 * 179.97438 * 3 2 1 5 5 C 1.72021 * 96.02681 * 359.79590 * 4 3 2 6 6 C 1.37902 * 105.36098 * 0.33702 * 5 4 3 7 7 C 1.47343 * 123.08047 * 179.88803 * 6 5 4 8 8 O 1.21615 * 119.99663 * 179.70271 * 7 6 5 9 9 N 1.34776 * 120.00299 * 359.70458 * 7 6 5 10 10 C 1.46501 * 119.99706 * 180.02562 * 9 7 6 11 11 H 1.08999 * 110.64330 * 31.85540 * 10 9 7 12 12 C 1.55157 * 110.71624 * 154.99571 * 10 9 7 13 13 C 1.54918 * 101.58155 * 153.86110 * 12 10 9 14 14 N 1.47425 * 104.82827 * 322.99497 * 13 12 10 15 15 C 1.36938 * 125.64463 * 204.10316 * 14 13 12 16 16 H 1.07992 * 120.00204 * 180.02562 * 15 14 13 17 17 C 1.38823 * 119.99891 * 0.02562 * 15 14 13 18 18 N 1.31612 * 119.99977 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99878 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47002 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46982 * 119.99825 * 19 17 15 22 22 H 1.48494 * 109.47162 * 240.00240 * 19 17 15 23 23 C 1.47015 * 108.70882 * 24.12597 * 14 13 12 24 24 H 1.08998 * 109.47146 * 270.02935 * 1 2 3 25 25 H 1.08999 * 109.47297 * 30.02664 * 1 2 3 26 26 H 1.09000 * 109.47068 * 150.02380 * 1 2 3 27 27 H 1.07995 * 127.31638 * 180.23953 * 5 4 3 28 28 H 0.96994 * 119.99876 * 359.97438 * 9 7 6 29 29 H 1.09001 * 111.00846 * 271.93819 * 12 10 9 30 30 H 1.09000 * 111.00346 * 35.79350 * 12 10 9 31 31 H 1.08999 * 110.35942 * 81.82689 * 13 12 10 32 32 H 1.08996 * 110.36556 * 204.15522 * 13 12 10 33 33 H 0.96999 * 120.00060 * 179.97438 * 18 17 15 34 34 H 1.09000 * 109.88350 * 239.52260 * 23 14 13 35 35 H 1.08998 * 109.88602 * 118.35926 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1040 0.0000 4 16 3.8310 0.7030 0.0007 5 6 3.6017 -1.0019 0.0071 6 6 2.2352 -1.1867 0.0006 7 6 1.6037 -2.5180 0.0008 8 8 0.3915 -2.6159 0.0003 9 7 2.3694 -3.6271 0.0015 10 6 1.7414 -4.9507 0.0011 11 1 0.7943 -4.9265 -0.5380 12 6 2.6948 -6.0104 -0.6115 13 6 2.1997 -7.3080 0.0749 14 7 1.8452 -6.8980 1.4459 15 6 1.8062 -7.7206 2.5400 16 1 1.5328 -7.3221 3.5057 17 6 2.1183 -9.0668 2.4076 18 7 2.4510 -9.5525 1.2306 19 14 2.0658 -10.1888 3.9002 20 1 1.6653 -9.4039 5.0956 21 1 1.0799 -11.2749 3.6686 22 1 3.4099 -10.7794 4.1229 23 6 1.5399 -5.4599 1.4439 24 1 -0.3633 0.0005 1.0276 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 4.3657 -1.7652 0.0132 28 1 3.3362 -3.5490 0.0015 29 1 2.5711 -6.0688 -1.6929 30 1 3.7319 -5.8010 -0.3492 31 1 1.3240 -7.7001 -0.4422 32 1 2.9947 -8.0533 0.0954 33 1 2.6694 -10.4931 1.1381 34 1 2.2162 -4.9364 2.1196 35 1 0.5069 -5.2997 1.7527 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010686610.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:23 Heat of formation + Delta-G solvation = 34.742226 kcal Electronic energy + Delta-G solvation = -19456.027507 eV Core-core repulsion = 16388.672177 eV Total energy + Delta-G solvation = -3067.355330 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.42687 -38.48991 -37.07267 -34.26786 -32.43286 -31.30401 -29.65609 -29.17700 -27.17490 -24.95647 -24.16836 -21.64017 -20.59198 -19.95134 -19.52930 -18.40846 -17.17562 -16.83351 -15.87369 -15.36572 -14.79678 -14.63612 -14.46980 -13.95022 -13.88624 -13.47104 -13.13504 -12.52163 -12.50059 -12.40097 -11.96490 -11.66907 -11.55250 -11.19867 -10.98637 -10.93133 -10.84089 -10.54157 -10.12031 -9.99647 -9.87314 -9.71290 -9.58887 -9.02162 -8.75960 -8.69600 -6.88074 -5.69703 -3.11282 0.17869 1.10276 1.50113 1.68630 3.19059 3.24382 3.38070 3.44107 3.46370 4.22281 4.46638 4.69780 4.80145 5.06074 5.23316 5.29087 5.40284 5.47634 5.52517 5.61593 5.73216 5.75965 6.04760 6.15336 6.33142 6.41059 6.42857 6.52404 6.69568 6.93172 7.42833 7.55326 7.60823 7.79076 8.23781 8.31192 9.17927 9.78432 10.42005 11.34615 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033620 B = 0.003495 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.628382 B = 8009.849207 C = 8100.260771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.167 3.833 3 N -0.472 5.472 4 S 0.282 5.718 5 C -0.173 4.173 6 C -0.206 4.206 7 C 0.582 3.418 8 O -0.529 6.529 9 N -0.707 5.707 10 C 0.131 3.869 11 H 0.097 0.903 12 C -0.150 4.150 13 C 0.153 3.847 14 N -0.604 5.604 15 C -0.221 4.221 16 H 0.078 0.922 17 C -0.011 4.011 18 N -0.923 5.923 19 Si 0.915 3.085 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.129 3.871 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.113 0.887 27 H 0.192 0.808 28 H 0.396 0.604 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.016 0.984 32 H 0.111 0.889 33 H 0.252 0.748 34 H 0.025 0.975 35 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.961 17.597 -5.339 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.011 4.011 3 N -0.293 5.293 4 S 0.437 5.563 5 C -0.323 4.323 6 C -0.228 4.228 7 C 0.366 3.634 8 O -0.407 6.407 9 N -0.356 5.356 10 C 0.027 3.973 11 H 0.115 0.885 12 C -0.189 4.189 13 C 0.028 3.972 14 N -0.330 5.330 15 C -0.350 4.350 16 H 0.096 0.904 17 C -0.206 4.206 18 N -0.572 5.572 19 Si 0.746 3.254 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.217 1.217 23 C 0.001 3.999 24 H 0.103 0.897 25 H 0.091 0.909 26 H 0.131 0.869 27 H 0.209 0.791 28 H 0.231 0.769 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.034 0.966 32 H 0.128 0.872 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 4.006 19.377 -5.275 20.478 hybrid contribution -0.203 -2.215 0.819 2.370 sum 3.803 17.162 -4.457 18.134 Atomic orbital electron populations 1.20948 0.85268 1.05154 1.04427 1.21492 0.99673 0.86644 0.93258 1.76498 1.00150 1.26198 1.26405 1.84034 1.10980 0.95750 1.65499 1.27448 0.99418 1.04695 1.00698 1.20516 0.92161 0.96416 1.13683 1.17297 0.86654 0.82881 0.76618 1.90727 1.13273 1.86460 1.50231 1.45929 1.09742 1.05840 1.74136 1.22180 0.97459 0.79587 0.98099 0.88525 1.23344 0.98298 0.97831 0.99435 1.21949 0.99957 0.92302 0.83004 1.44456 1.80245 1.02675 1.05648 1.19139 1.39043 0.89486 0.87303 0.90389 1.24784 1.01950 0.96751 0.97147 1.69771 1.53127 1.13154 1.21149 0.85984 0.77250 0.80645 0.81547 1.20511 1.21690 1.21729 1.21599 0.98009 0.86938 0.93318 0.89688 0.90930 0.86893 0.79114 0.76912 0.91635 0.91714 0.96562 0.87157 0.93723 0.95687 0.95380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 9.52 36.00 0.34 -0.76 16 2 C 0.17 2.07 6.75 -83.20 -0.56 1.51 16 3 N -0.47 -5.76 11.97 32.50 0.39 -5.37 16 4 S 0.28 2.57 23.69 -107.50 -2.55 0.03 16 5 C -0.17 -1.56 10.79 30.61 0.33 -1.23 16 6 C -0.21 -2.48 5.86 -105.95 -0.62 -3.10 16 7 C 0.58 8.38 7.78 -12.56 -0.10 8.28 16 8 O -0.53 -9.09 13.39 5.26 0.07 -9.02 16 9 N -0.71 -9.70 5.07 -53.13 -0.27 -9.97 16 10 C 0.13 2.26 3.32 -66.09 -0.22 2.04 16 11 H 0.10 1.76 7.55 -51.93 -0.39 1.37 16 12 C -0.15 -2.60 6.71 -24.58 -0.16 -2.76 16 13 C 0.15 3.57 5.89 -2.52 -0.01 3.56 16 14 N -0.60 -15.27 3.39 -170.07 -0.58 -15.85 16 15 C -0.22 -6.14 10.27 -15.05 -0.15 -6.29 16 16 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 17 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 18 N -0.92 -26.35 10.09 55.49 0.56 -25.79 16 19 Si 0.92 21.85 29.55 -169.99 -5.02 16.82 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 C 0.13 2.72 6.99 -3.07 -0.02 2.70 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.11 1.44 5.63 -51.93 -0.29 1.14 16 27 H 0.19 1.11 7.20 -52.49 -0.38 0.73 16 28 H 0.40 4.28 7.14 -40.82 -0.29 3.99 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.04 8.01 -51.93 -0.42 0.63 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.11 2.88 5.87 -51.93 -0.31 2.58 16 33 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.03 0.53 8.03 -51.93 -0.42 0.11 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 304.12 15.07 4.58 4.58 Total: -1.00 -31.56 304.12 -8.24 -39.81 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -4.15 Total: 1.22 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -1.28 Total: 3.54 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.10 Total: -56.98 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.07 Total: -9.02 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -2.55 Total: 0.03 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.56 -8.24 -39.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010686610.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.550 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds