Wall clock time and date at job start Tue Mar 31 2020 05:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29519 * 121.53133 * 2 1 4 4 S 1.69483 * 107.84525 * 179.97438 * 3 2 1 5 5 C 1.72021 * 96.02681 * 359.79590 * 4 3 2 6 6 C 1.37902 * 105.36098 * 0.33702 * 5 4 3 7 7 C 1.47343 * 123.08047 * 179.88803 * 6 5 4 8 8 O 1.21615 * 119.99663 * 179.70271 * 7 6 5 9 9 N 1.34776 * 120.00299 * 359.70458 * 7 6 5 10 10 C 1.46501 * 119.99706 * 180.02562 * 9 7 6 11 11 H 1.08999 * 110.64330 * 31.85540 * 10 9 7 12 12 C 1.55157 * 110.71624 * 154.99571 * 10 9 7 13 13 C 1.54918 * 101.58155 * 153.86110 * 12 10 9 14 14 N 1.47425 * 104.82827 * 322.99497 * 13 12 10 15 15 C 1.36938 * 125.64463 * 204.10316 * 14 13 12 16 16 H 1.07992 * 120.00204 * 180.02562 * 15 14 13 17 17 C 1.38823 * 119.99891 * 0.02562 * 15 14 13 18 18 N 1.31612 * 119.99977 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99878 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47002 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46982 * 119.99825 * 19 17 15 22 22 H 1.48494 * 109.47162 * 240.00240 * 19 17 15 23 23 C 1.47015 * 108.70882 * 24.12597 * 14 13 12 24 24 H 1.08998 * 109.47146 * 270.02935 * 1 2 3 25 25 H 1.08999 * 109.47297 * 30.02664 * 1 2 3 26 26 H 1.09000 * 109.47068 * 150.02380 * 1 2 3 27 27 H 1.07995 * 127.31638 * 180.23953 * 5 4 3 28 28 H 0.96994 * 119.99876 * 359.97438 * 9 7 6 29 29 H 1.09001 * 111.00846 * 271.93819 * 12 10 9 30 30 H 1.09000 * 111.00346 * 35.79350 * 12 10 9 31 31 H 1.08999 * 110.35942 * 81.82689 * 13 12 10 32 32 H 1.08996 * 110.36556 * 204.15522 * 13 12 10 33 33 H 0.96999 * 120.00060 * 179.97438 * 18 17 15 34 34 H 1.09000 * 109.88350 * 239.52260 * 23 14 13 35 35 H 1.08998 * 109.88602 * 118.35926 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1040 0.0000 4 16 3.8310 0.7030 0.0007 5 6 3.6017 -1.0019 0.0071 6 6 2.2352 -1.1867 0.0006 7 6 1.6037 -2.5180 0.0008 8 8 0.3915 -2.6159 0.0003 9 7 2.3694 -3.6271 0.0015 10 6 1.7414 -4.9507 0.0011 11 1 0.7943 -4.9265 -0.5380 12 6 2.6948 -6.0104 -0.6115 13 6 2.1997 -7.3080 0.0749 14 7 1.8452 -6.8980 1.4459 15 6 1.8062 -7.7206 2.5400 16 1 1.5328 -7.3221 3.5057 17 6 2.1183 -9.0668 2.4076 18 7 2.4510 -9.5525 1.2306 19 14 2.0658 -10.1888 3.9002 20 1 1.6653 -9.4039 5.0956 21 1 1.0799 -11.2749 3.6686 22 1 3.4099 -10.7794 4.1229 23 6 1.5399 -5.4599 1.4439 24 1 -0.3633 0.0005 1.0276 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 4.3657 -1.7652 0.0132 28 1 3.3362 -3.5490 0.0015 29 1 2.5711 -6.0688 -1.6929 30 1 3.7319 -5.8010 -0.3492 31 1 1.3240 -7.7001 -0.4422 32 1 2.9947 -8.0533 0.0954 33 1 2.6694 -10.4931 1.1381 34 1 2.2162 -4.9364 2.1196 35 1 0.5069 -5.2997 1.7527 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010686610.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:22 Heat of formation + Delta-G solvation = 13.133892 kcal Electronic energy + Delta-G solvation = -19456.964515 eV Core-core repulsion = 16388.672177 eV Total energy + Delta-G solvation = -3068.292337 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.47924 -39.67526 -38.51633 -35.73441 -34.01098 -32.53345 -30.91298 -30.53645 -28.80734 -26.60610 -25.36532 -22.82484 -22.21411 -21.45378 -20.53096 -19.41883 -18.82030 -18.08080 -17.24908 -16.64432 -16.39606 -15.96394 -15.68125 -15.28325 -15.03348 -14.69029 -14.35405 -14.21683 -13.70498 -13.47954 -13.37058 -13.27161 -13.01263 -12.74542 -12.49805 -12.35400 -12.17246 -11.98484 -11.83853 -11.76994 -11.40343 -10.86873 -10.79278 -10.75968 -10.17926 -9.67406 -8.90656 -7.78602 -5.23293 -0.61057 0.34714 0.69465 0.73848 1.47790 1.48837 1.58962 2.04917 2.18113 2.50559 3.32032 3.47349 3.65228 3.77244 3.90278 3.95393 4.05322 4.26094 4.32342 4.42207 4.60342 4.66181 4.70855 4.76660 4.92318 4.99748 5.05612 5.21335 5.45774 5.53194 5.61459 5.62281 5.79208 6.30580 6.51228 7.10434 7.17314 7.76169 8.38704 9.23164 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033620 B = 0.003495 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.628382 B = 8009.849207 C = 8100.260771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.156 3.844 3 N -0.505 5.505 4 S 0.336 5.664 5 C -0.149 4.149 6 C -0.234 4.234 7 C 0.584 3.416 8 O -0.563 6.563 9 N -0.695 5.695 10 C 0.151 3.849 11 H 0.086 0.914 12 C -0.127 4.127 13 C 0.152 3.848 14 N -0.624 5.624 15 C -0.242 4.242 16 H 0.076 0.924 17 C -0.061 4.061 18 N -0.945 5.945 19 Si 0.979 3.021 20 H -0.270 1.270 21 H -0.293 1.293 22 H -0.287 1.287 23 C 0.127 3.873 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.228 0.772 28 H 0.414 0.586 29 H 0.094 0.906 30 H 0.085 0.915 31 H -0.011 1.011 32 H 0.082 0.918 33 H 0.249 0.751 34 H 0.031 0.969 35 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.910 18.913 -5.417 20.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.020 4.020 3 N -0.327 5.327 4 S 0.491 5.509 5 C -0.299 4.299 6 C -0.255 4.255 7 C 0.370 3.630 8 O -0.444 6.444 9 N -0.346 5.346 10 C 0.045 3.955 11 H 0.104 0.896 12 C -0.166 4.166 13 C 0.026 3.974 14 N -0.351 5.351 15 C -0.371 4.371 16 H 0.094 0.906 17 C -0.254 4.254 18 N -0.595 5.595 19 Si 0.808 3.192 20 H -0.195 1.195 21 H -0.220 1.220 22 H -0.213 1.213 23 C 0.000 4.000 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.115 0.885 27 H 0.245 0.755 28 H 0.252 0.748 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.007 0.993 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 5.976 20.732 -5.359 22.232 hybrid contribution -0.751 -2.537 0.853 2.780 sum 5.226 18.195 -4.507 19.459 Atomic orbital electron populations 1.20868 0.85587 1.04857 1.04251 1.21540 0.99955 0.86968 0.93555 1.76348 1.02289 1.26683 1.27355 1.83902 1.08427 0.94957 1.63577 1.27928 0.98849 1.05901 0.97204 1.20248 0.93323 0.94798 1.17155 1.17603 0.86249 0.83679 0.75510 1.90724 1.14943 1.87039 1.51665 1.45633 1.10594 1.04245 1.74128 1.21699 0.97457 0.81250 0.95102 0.89580 1.23137 0.99003 0.94012 1.00432 1.21783 0.97973 0.94840 0.82758 1.44734 1.80357 1.04176 1.05789 1.19450 1.39084 0.90402 0.88192 0.90620 1.25579 1.01962 0.98023 0.99829 1.70005 1.53660 1.13072 1.22754 0.84998 0.77006 0.78481 0.78745 1.19510 1.21968 1.21342 1.21701 0.96840 0.85200 0.96213 0.89834 0.89816 0.88486 0.75525 0.74796 0.88798 0.89609 0.99318 0.89981 0.94133 0.95100 0.97344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.16 9.52 71.23 0.68 -1.48 16 2 C 0.16 3.69 6.75 43.14 0.29 3.99 16 3 N -0.51 -11.43 11.97 -51.09 -0.61 -12.04 16 4 S 0.34 5.02 23.69 -56.49 -1.34 3.68 16 5 C -0.15 -2.12 10.79 67.74 0.73 -1.39 16 6 C -0.23 -5.14 5.86 -20.72 -0.12 -5.26 16 7 C 0.58 16.00 7.78 86.64 0.67 16.68 16 8 O -0.56 -19.42 13.39 -4.08 -0.05 -19.47 16 9 N -0.69 -17.40 5.07 -440.25 -2.23 -19.63 16 10 C 0.15 5.01 3.32 46.18 0.15 5.16 16 11 H 0.09 3.10 7.55 -2.39 -0.02 3.09 16 12 C -0.13 -4.15 6.71 31.99 0.21 -3.93 16 13 C 0.15 7.15 5.89 86.86 0.51 7.66 16 14 N -0.62 -31.97 3.39 -691.99 -2.35 -34.32 16 15 C -0.24 -13.62 10.27 84.04 0.86 -12.76 16 16 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 17 C -0.06 -3.42 5.49 84.87 0.47 -2.96 16 18 N -0.95 -54.94 10.09 21.65 0.22 -54.73 16 19 Si 0.98 45.19 29.55 68.60 2.03 47.22 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 23 C 0.13 5.38 6.99 86.73 0.61 5.99 16 24 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.10 2.54 5.63 -2.39 -0.01 2.53 16 27 H 0.23 1.38 7.20 -2.91 -0.02 1.36 16 28 H 0.41 7.32 7.14 -92.71 -0.66 6.66 16 29 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.09 2.48 8.01 -2.39 -0.02 2.46 16 31 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 32 H 0.08 4.36 5.87 -2.39 -0.01 4.35 16 33 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 34 H 0.03 1.27 8.03 -2.39 -0.02 1.25 16 35 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -70.29 304.12 1.19 -69.10 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.46 Total: 8.49 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 5.07 Total: 11.69 kcal Atomic # 7 Polarization: -115.74 SS G_CDS: -4.98 Total: -120.71 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.05 Total: -19.47 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: 5.02 SS G_CDS: -1.34 Total: 3.68 kcal Total: -70.29 1.19 -69.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010686610.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.233 kcal (2) G-P(sol) polarization free energy of solvation -70.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds