Wall clock time and date at job start Tue Mar 31 2020 05:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35005 * 127.27161 * 2 1 4 4 C 1.39484 * 111.68027 * 179.97438 * 3 2 1 5 5 C 1.47697 * 122.10358 * 180.02562 * 4 3 2 6 6 O 1.21580 * 119.99459 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00321 * 180.02562 * 5 4 3 8 8 C 1.46503 * 120.00097 * 179.72086 * 7 5 4 9 9 H 1.09007 * 110.88392 * 328.88040 * 8 7 5 10 10 C 1.55158 * 111.00346 * 204.99811 * 8 7 5 11 11 C 1.54322 * 102.94371 * 277.42848 * 10 8 7 12 12 N 1.47030 * 107.26820 * 337.80764 * 11 10 8 13 13 C 1.36934 * 125.64626 * 178.89673 * 12 11 10 14 14 H 1.08003 * 120.00250 * 174.88516 * 13 12 11 15 15 C 1.38813 * 119.99960 * 354.87779 * 13 12 11 16 16 N 1.31614 * 120.00159 * 7.06874 * 15 13 12 17 17 Si 1.86801 * 120.00050 * 187.06444 * 15 13 12 18 18 H 1.48499 * 109.47237 * 94.98716 * 17 15 13 19 19 H 1.48497 * 109.47397 * 214.98999 * 17 15 13 20 20 H 1.48501 * 109.47291 * 334.99020 * 17 15 13 21 21 C 1.47427 * 108.70315 * 358.94033 * 12 11 10 22 22 N 1.30605 * 115.79856 * 0.27025 * 4 3 2 23 23 S 1.56151 * 109.79293 * 359.58152 * 22 4 3 24 24 H 1.08996 * 109.47541 * 89.99082 * 1 2 3 25 25 H 1.09004 * 109.46941 * 209.99819 * 1 2 3 26 26 H 1.09009 * 109.46841 * 329.98810 * 1 2 3 27 27 H 1.07992 * 124.16001 * 359.95516 * 3 2 1 28 28 H 0.96996 * 119.99713 * 359.97438 * 7 5 4 29 29 H 1.08994 * 110.71776 * 35.79433 * 10 8 7 30 30 H 1.08998 * 110.71474 * 159.06350 * 10 8 7 31 31 H 1.08991 * 109.88217 * 97.22006 * 11 10 8 32 32 H 1.08993 * 109.88457 * 218.23954 * 11 10 8 33 33 H 0.97003 * 120.00110 * 179.97438 * 16 15 13 34 34 H 1.08999 * 110.36485 * 265.28925 * 21 12 11 35 35 H 1.09005 * 110.36335 * 142.96715 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.0743 0.0000 4 6 3.6681 0.6994 0.0006 5 6 4.7604 1.6936 0.0013 6 8 4.5012 2.8814 0.0009 7 7 6.0444 1.2840 0.0013 8 6 7.1279 2.2701 -0.0042 9 1 6.8277 3.1743 -0.5340 10 6 8.4220 1.6710 -0.6156 11 6 9.0445 0.9080 0.5727 12 7 8.4963 1.4955 1.8040 13 6 8.7815 1.0862 3.0792 14 1 8.3913 1.6360 3.9229 15 6 9.5721 -0.0357 3.2875 16 7 10.1614 -0.6240 2.2683 17 14 9.7997 -0.7103 5.0145 18 1 8.8154 -1.7958 5.2556 19 1 11.1760 -1.2491 5.1582 20 1 9.5884 0.3778 6.0029 21 6 7.5880 2.5976 1.4382 22 7 3.8996 -0.5859 -0.0045 23 16 2.5473 -1.3667 0.0007 24 1 -0.3634 0.0002 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5141 27 1 1.9807 2.0980 -0.0007 28 1 6.2511 0.3363 0.0012 29 1 8.1831 0.9875 -1.4302 30 1 9.0889 2.4623 -0.9578 31 1 8.7790 -0.1475 0.5155 32 1 10.1287 1.0188 0.5572 33 1 10.7142 -1.4077 2.4140 34 1 8.1184 3.5495 1.4603 35 1 6.7321 2.6234 2.1128 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010772669.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:08 Heat of formation + Delta-G solvation = 30.603743 kcal Electronic energy + Delta-G solvation = -19588.646870 eV Core-core repulsion = 16521.112082 eV Total energy + Delta-G solvation = -3067.534788 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.33733 -38.54536 -37.01049 -33.90769 -33.26960 -31.70193 -29.19684 -28.35882 -27.47948 -25.51034 -24.25352 -21.30631 -20.17252 -19.98100 -19.76078 -18.29754 -17.33527 -16.65716 -15.81867 -15.44862 -14.62859 -14.53344 -14.22091 -13.84026 -13.74760 -13.33576 -13.15500 -13.08544 -12.80403 -12.36014 -11.90644 -11.80731 -11.24066 -11.01111 -10.93108 -10.89668 -10.70774 -10.34187 -10.10608 -9.94428 -9.71287 -9.67334 -9.60730 -8.91447 -8.67622 -8.47457 -6.79729 -5.71008 -3.02292 0.52799 1.31493 1.76776 1.77109 3.38811 3.41336 3.46966 3.48589 3.48684 4.48648 4.52214 4.85068 5.07257 5.11340 5.19660 5.33201 5.46625 5.49564 5.51387 5.66029 5.74435 5.79807 5.85686 6.21181 6.28630 6.39206 6.51098 6.52533 6.70164 7.03850 7.54999 7.59683 7.81896 7.88473 8.26811 8.44996 9.23704 9.83962 10.50167 11.41389 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019079 B = 0.004758 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.251632 B = 5883.351429 C = 6667.513244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.254 4.254 3 C -0.140 4.140 4 C 0.060 3.940 5 C 0.588 3.412 6 O -0.541 6.541 7 N -0.682 5.682 8 C 0.125 3.875 9 H 0.093 0.907 10 C -0.153 4.153 11 C 0.174 3.826 12 N -0.604 5.604 13 C -0.226 4.226 14 H 0.077 0.923 15 C -0.007 4.007 16 N -0.921 5.921 17 Si 0.909 3.091 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.126 3.874 22 N -0.513 5.513 23 S 0.457 5.543 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.170 0.830 28 H 0.412 0.588 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.043 0.957 33 H 0.251 0.749 34 H 0.030 0.970 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.547 -0.749 -8.065 19.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.385 4.385 3 C -0.173 4.173 4 C -0.115 4.115 5 C 0.369 3.631 6 O -0.418 6.418 7 N -0.331 5.331 8 C 0.020 3.980 9 H 0.111 0.889 10 C -0.192 4.192 11 C 0.050 3.950 12 N -0.331 5.331 13 C -0.354 4.354 14 H 0.095 0.905 15 C -0.203 4.203 16 N -0.568 5.568 17 Si 0.740 3.260 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.207 1.207 21 C -0.002 4.002 22 N -0.347 5.347 23 S 0.612 5.388 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.187 0.813 28 H 0.248 0.752 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.047 0.953 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -16.784 -2.064 -7.957 18.689 hybrid contribution 0.000 1.012 0.997 1.421 sum -16.784 -1.052 -6.960 18.200 Atomic orbital electron populations 1.20187 0.86187 1.03613 1.03081 1.26094 1.03252 1.00303 1.08820 1.21249 0.90332 1.01853 1.03837 1.21178 0.95083 0.89307 1.05959 1.17206 0.82063 0.86670 0.77172 1.90766 1.83594 1.15970 1.51467 1.45711 1.04390 1.11535 1.71496 1.22242 0.85932 0.91416 0.98404 0.88933 1.23224 0.95575 1.00659 0.99739 1.21182 0.96658 0.95329 0.81869 1.44475 1.50297 1.35827 1.02461 1.19058 1.26553 1.07450 0.82367 0.90534 1.24784 0.99889 0.98156 0.97461 1.69964 1.35378 1.22999 1.28500 0.86136 0.77037 0.79032 0.83829 1.21713 1.21770 1.20668 1.21947 0.93389 0.92016 0.92800 1.72340 1.28621 1.10760 1.22994 1.80460 0.87757 1.12566 1.58043 0.90294 0.90758 0.90309 0.81266 0.75221 0.91544 0.90763 0.93434 0.93850 0.93819 0.95266 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.46 36.01 0.38 -0.07 16 2 C -0.25 -2.56 6.58 -35.46 -0.23 -2.80 16 3 C -0.14 -1.80 9.93 -40.27 -0.40 -2.20 16 4 C 0.06 0.94 6.66 -84.06 -0.56 0.38 16 5 C 0.59 10.71 7.81 -12.40 -0.10 10.61 16 6 O -0.54 -10.76 16.30 5.30 0.09 -10.67 16 7 N -0.68 -12.67 5.18 -52.71 -0.27 -12.94 16 8 C 0.13 2.36 3.43 -65.78 -0.23 2.14 16 9 H 0.09 1.65 7.54 -51.92 -0.39 1.25 16 10 C -0.15 -2.83 6.55 -24.90 -0.16 -3.00 16 11 C 0.17 4.20 5.37 -3.06 -0.02 4.18 16 12 N -0.60 -15.65 3.39 -170.07 -0.58 -16.22 16 13 C -0.23 -6.44 10.27 -15.06 -0.15 -6.59 16 14 H 0.08 2.14 7.84 -52.48 -0.41 1.73 16 15 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 16 N -0.92 -27.12 10.36 55.49 0.57 -26.54 16 17 Si 0.91 22.50 29.56 -169.99 -5.02 17.47 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.13 2.77 6.93 -2.53 -0.02 2.75 16 22 N -0.51 -7.78 10.71 24.84 0.27 -7.52 16 23 S 0.46 4.92 23.20 -107.50 -2.49 2.42 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.17 2.03 7.99 -52.49 -0.42 1.61 16 28 H 0.41 7.81 8.13 -40.82 -0.33 7.48 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.05 1.26 7.30 -51.93 -0.38 0.88 16 32 H 0.04 1.15 7.61 -51.93 -0.40 0.76 16 33 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 311.20 15.07 4.69 4.69 Total: -1.00 -32.67 311.20 -8.76 -41.43 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -4.42 Total: 2.78 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -1.59 Total: 5.11 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: -0.01 Total: -63.22 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 16 Polarization: 4.92 SS G_CDS: -2.49 Total: 2.42 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.67 -8.76 -41.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010772669.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.032 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds