Wall clock time and date at job start Tue Mar 31 2020 05:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00374 * 2 1 4 4 H 1.48497 * 109.47625 * 240.00186 * 3 2 1 5 5 H 1.48496 * 109.47093 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47018 * 120.00401 * 3 2 1 7 7 C 1.38817 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00195 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99606 * 359.97438 * 7 2 1 10 10 C 1.47421 * 125.65040 * 359.96185 * 9 7 2 11 11 C 1.55395 * 104.87529 * 204.16502 * 10 9 7 12 12 C 1.55154 * 101.36433 * 323.01876 * 11 10 9 13 13 H 1.09003 * 110.72252 * 153.94273 * 12 11 10 14 14 N 1.46506 * 110.72006 * 277.03908 * 12 11 10 15 15 C 1.34768 * 120.00142 * 202.56043 * 14 12 11 16 16 O 1.21279 * 120.00177 * 0.02562 * 15 14 12 17 17 C 1.50706 * 120.00164 * 179.97438 * 15 14 12 18 18 C 1.50697 * 109.47373 * 179.97438 * 17 15 14 19 19 C 1.33638 * 126.03484 * 89.71820 * 18 17 15 20 20 N 1.31786 * 114.50009 * 179.79237 * 19 18 17 21 21 C 1.29028 * 117.12250 * 0.51679 * 20 19 18 22 22 S 1.70984 * 110.16657 * 359.71847 * 21 20 19 23 23 C 1.47022 * 125.64469 * 179.97438 * 9 7 2 24 24 H 0.97002 * 119.99486 * 359.97438 * 1 2 3 25 25 H 1.08997 * 110.36837 * 322.99988 * 10 9 7 26 26 H 1.09000 * 110.37112 * 85.21456 * 10 9 7 27 27 H 1.08996 * 111.19188 * 204.98011 * 11 10 9 28 28 H 1.09001 * 111.01724 * 80.98046 * 11 10 9 29 29 H 0.97002 * 119.99472 * 22.55840 * 14 12 11 30 30 H 1.09000 * 109.46823 * 300.00381 * 17 15 14 31 31 H 1.09001 * 109.46865 * 60.00185 * 17 15 14 32 32 H 1.07999 * 122.74940 * 359.97147 * 19 18 17 33 33 H 1.07997 * 124.91832 * 179.75539 * 21 20 19 34 34 H 1.08997 * 109.88227 * 59.49037 * 23 9 7 35 35 H 1.08996 * 110.01406 * 298.39296 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1417 -2.5331 0.0008 11 6 -0.4033 -3.9363 0.6151 12 6 0.7781 -4.7524 0.0273 13 1 1.0256 -5.5937 0.6747 14 7 0.4643 -5.2172 -1.3262 15 6 1.1097 -6.2834 -1.8390 16 8 1.9498 -6.8585 -1.1800 17 6 0.7865 -6.7619 -3.2311 18 6 1.6407 -7.9585 -3.5620 19 6 1.3278 -9.2366 -3.3284 20 7 2.2428 -10.1027 -3.7148 21 6 3.3145 -9.6257 -4.2522 22 16 3.2316 -7.9192 -4.3182 23 6 1.9316 -3.7275 -0.0016 24 1 -0.4849 0.8401 0.0004 25 1 -0.5989 -1.7586 0.6166 26 1 -0.5286 -2.4850 -1.0171 27 1 -1.3600 -4.3395 0.2833 28 1 -0.3516 -3.9024 1.7033 29 1 -0.2079 -4.7575 -1.8531 30 1 -0.2660 -7.0404 -3.2843 31 1 0.9877 -5.9636 -3.9455 32 1 0.3998 -9.5353 -2.8637 33 1 4.1436 -10.2186 -4.6091 34 1 2.5592 -3.8510 0.8809 35 1 2.5284 -3.8661 -0.9031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014821909.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:27 Heat of formation + Delta-G solvation = 38.923207 kcal Electronic energy + Delta-G solvation = -19328.777268 eV Core-core repulsion = 16261.603240 eV Total energy + Delta-G solvation = -3067.174029 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.04474 -39.29537 -37.25332 -33.86177 -32.93999 -31.71777 -29.26522 -28.09105 -26.97976 -24.85604 -24.29465 -21.13755 -20.25524 -20.07048 -19.82328 -18.17657 -17.23275 -16.77696 -16.11374 -15.51510 -14.92876 -14.70511 -14.42272 -14.04021 -13.81794 -13.76686 -13.26124 -12.88270 -12.82539 -12.32121 -11.98955 -11.65618 -11.32325 -11.09825 -10.90075 -10.80762 -10.44226 -10.17934 -9.92313 -9.83492 -9.76306 -9.61568 -9.30876 -9.00402 -8.78604 -8.64418 -6.87899 -5.69844 -3.10853 0.58599 1.25742 1.64948 2.71521 2.77341 3.38399 3.42745 3.43710 3.44906 4.20723 4.46410 4.54689 4.89846 4.96251 5.11707 5.25611 5.32830 5.41466 5.46794 5.59105 5.71910 5.82727 6.02204 6.22881 6.31447 6.44979 6.50613 6.69079 7.00255 7.38265 7.57494 7.58294 7.72634 7.79744 8.30592 8.40538 9.18357 9.78888 10.43193 11.34367 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.030653 B = 0.003620 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.227143 B = 7732.253427 C = 8249.937017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.222 4.222 8 H 0.076 0.924 9 N -0.603 5.603 10 C 0.152 3.848 11 C -0.154 4.154 12 C 0.131 3.869 13 H 0.088 0.912 14 N -0.709 5.709 15 C 0.512 3.488 16 O -0.537 6.537 17 C -0.067 4.067 18 C -0.193 4.193 19 C 0.040 3.960 20 N -0.471 5.471 21 C 0.009 3.991 22 S 0.139 5.861 23 C 0.128 3.872 24 H 0.252 0.748 25 H 0.108 0.892 26 H 0.011 0.989 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.401 0.599 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.173 0.827 33 H 0.197 0.803 34 H 0.030 0.970 35 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.315 -14.937 -8.567 17.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.746 3.254 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.193 4.193 12 C 0.026 3.974 13 H 0.106 0.894 14 N -0.360 5.360 15 C 0.297 3.703 16 O -0.413 6.413 17 C -0.109 4.109 18 C -0.314 4.314 19 C -0.111 4.111 20 N -0.185 5.185 21 C -0.288 4.288 22 S 0.391 5.609 23 C 0.001 3.999 24 H 0.063 0.937 25 H 0.126 0.874 26 H 0.029 0.971 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.236 0.764 30 H 0.133 0.867 31 H 0.126 0.874 32 H 0.190 0.810 33 H 0.214 0.786 34 H 0.048 0.952 35 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.912 -14.960 -8.401 17.182 hybrid contribution -0.523 0.802 0.072 0.960 sum 0.390 -14.158 -8.329 16.431 Atomic orbital electron populations 1.69764 1.04869 1.24902 1.57766 1.24767 0.95744 0.97686 1.02424 0.86140 0.78407 0.82947 0.77940 1.21238 1.21554 1.21133 1.19052 0.90536 0.82447 1.43000 0.90568 1.44499 1.01811 0.99751 1.86911 1.22032 0.84886 0.92389 0.98011 1.23422 0.95806 0.99133 1.00912 1.22006 0.96868 0.96352 0.82141 0.89412 1.45967 1.41826 1.30680 1.17481 1.20314 0.81686 0.80361 0.87975 1.90716 1.32636 1.56763 1.61232 1.20079 1.00113 0.94916 0.95822 1.25320 0.99004 0.98750 1.08375 1.21653 1.00287 0.87381 1.01823 1.66300 1.01569 1.38201 1.12402 1.28315 1.00577 0.96038 1.03855 1.84081 1.14310 1.07741 1.54754 1.21675 0.93868 0.85905 0.98459 0.93686 0.87417 0.97119 0.91665 0.90607 0.76435 0.86703 0.87429 0.80990 0.78619 0.95170 0.95724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.19 10.09 55.49 0.56 -25.63 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 3 Si 0.92 21.83 29.55 -169.99 -5.02 16.81 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.22 -6.15 10.27 -15.06 -0.15 -6.30 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.15 3.40 -169.77 -0.58 -15.73 16 10 C 0.15 3.45 5.87 -2.27 -0.01 3.44 16 11 C -0.15 -2.69 6.69 -24.32 -0.16 -2.85 16 12 C 0.13 2.29 3.28 -66.09 -0.22 2.08 16 13 H 0.09 1.54 7.62 -51.93 -0.40 1.14 16 14 N -0.71 -10.44 5.10 -52.02 -0.27 -10.71 16 15 C 0.51 7.46 7.82 -10.99 -0.09 7.37 16 16 O -0.54 -9.91 15.72 5.56 0.09 -9.82 16 17 C -0.07 -0.69 6.24 -29.03 -0.18 -0.87 16 18 C -0.19 -2.26 5.09 -35.92 -0.18 -2.44 16 19 C 0.04 0.48 11.25 -19.18 -0.22 0.26 16 20 N -0.47 -5.98 10.54 -15.75 -0.17 -6.15 16 21 C 0.01 0.10 12.23 51.58 0.63 0.73 16 22 S 0.14 1.49 23.22 -107.50 -2.50 -1.01 16 23 C 0.13 2.75 6.98 -3.06 -0.02 2.73 16 24 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.11 2.81 5.87 -51.93 -0.31 2.50 16 26 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.40 5.15 8.63 -40.82 -0.35 4.80 16 30 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.20 1.34 8.06 -52.49 -0.42 0.91 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.02 0.56 8.04 -51.93 -0.42 0.14 16 LS Contribution 311.43 15.07 4.69 4.69 Total: -1.00 -33.16 311.43 -8.29 -41.45 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -4.40 Total: 2.35 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -0.70 Total: 3.75 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -0.45 Total: -58.21 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.50 Total: -1.01 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.16 -8.29 -41.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014821909.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.371 kcal (2) G-P(sol) polarization free energy of solvation -33.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds