Wall clock time and date at job start Tue Mar 31 2020 05:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86787 * 120.00284 * 2 1 4 4 H 1.48508 * 109.47225 * 274.98608 * 3 2 1 5 5 H 1.48503 * 109.47485 * 34.98300 * 3 2 1 6 6 H 1.48503 * 109.47359 * 154.98661 * 3 2 1 7 7 C 1.38809 * 119.99478 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99937 * 187.06546 * 7 2 1 9 9 N 1.36936 * 120.00500 * 7.06097 * 7 2 1 10 10 C 1.47018 * 125.64821 * 354.88350 * 9 7 2 11 11 C 1.54327 * 107.27369 * 178.90006 * 10 9 7 12 12 C 1.55154 * 103.10091 * 337.71727 * 11 10 9 13 13 H 1.08992 * 111.00524 * 277.51565 * 12 11 10 14 14 N 1.46507 * 111.00233 * 153.66050 * 12 11 10 15 15 C 1.34769 * 119.99638 * 154.99782 * 14 12 11 16 16 O 1.21289 * 120.00543 * 0.02562 * 15 14 12 17 17 C 1.50701 * 119.99822 * 180.02562 * 15 14 12 18 18 C 1.50705 * 109.47318 * 180.02562 * 17 15 14 19 19 C 1.33641 * 126.03476 * 89.71325 * 18 17 15 20 20 N 1.31785 * 114.49417 * 179.79161 * 19 18 17 21 21 C 1.29021 * 117.12753 * 0.52163 * 20 19 18 22 22 S 1.70975 * 110.16639 * 359.71459 * 21 20 19 23 23 C 1.47431 * 125.64950 * 174.83517 * 9 7 2 24 24 H 0.97002 * 120.00252 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.88507 * 59.48297 * 10 9 7 26 26 H 1.09001 * 109.88068 * 298.31752 * 10 9 7 27 27 H 1.09006 * 110.71556 * 96.17280 * 11 10 9 28 28 H 1.09000 * 110.71737 * 219.26260 * 11 10 9 29 29 H 0.96997 * 119.99825 * 335.00253 * 14 12 11 30 30 H 1.09001 * 109.47037 * 300.00237 * 17 15 14 31 31 H 1.09001 * 109.47133 * 60.00176 * 17 15 14 32 32 H 1.07996 * 122.75230 * 359.97438 * 19 18 17 33 33 H 1.08004 * 124.91698 * 179.75122 * 21 20 19 34 34 H 1.08993 * 110.36520 * 323.00680 * 23 9 7 35 35 H 1.09000 * 110.36458 * 85.32958 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3924 2.1071 -1.3948 5 1 1.5044 2.6199 0.8027 6 1 3.5965 1.4119 0.5920 7 6 2.0101 -1.2022 0.0005 8 1 3.0840 -1.2058 0.1156 9 7 1.3332 -2.3836 -0.1447 10 6 -0.1283 -2.5322 -0.2033 11 6 -0.4288 -4.0331 -0.3999 12 6 0.8893 -4.5787 -1.0101 13 1 0.9243 -4.4027 -2.0851 14 7 1.0583 -6.0021 -0.7073 15 6 1.8115 -6.7774 -1.5122 16 8 2.3497 -6.2967 -2.4871 17 6 1.9850 -8.2417 -1.2011 18 6 2.8657 -8.8765 -2.2464 19 6 4.1978 -8.9731 -2.1988 20 7 4.7392 -9.5780 -3.2369 21 6 3.9389 -9.9878 -4.1623 22 16 2.3218 -9.6155 -3.7505 23 6 1.9493 -3.7172 -0.2693 24 1 -0.4850 0.8400 0.0004 25 1 -0.5256 -1.9616 -1.0427 26 1 -0.5739 -2.1839 0.7285 27 1 -0.6388 -4.5128 0.5562 28 1 -1.2604 -4.1726 -1.0906 29 1 0.6282 -6.3865 0.0725 30 1 2.4478 -8.3525 -0.2205 31 1 1.0109 -8.7309 -1.2005 32 1 4.7824 -8.5896 -1.3757 33 1 4.2460 -10.4934 -5.0659 34 1 2.8664 -3.6582 -0.8554 35 1 2.1545 -4.1339 0.7168 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014821913.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:28 Heat of formation + Delta-G solvation = 37.886852 kcal Electronic energy + Delta-G solvation = -19144.912214 eV Core-core repulsion = 16077.693246 eV Total energy + Delta-G solvation = -3067.218968 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.07800 -39.30250 -37.24774 -34.05264 -32.99459 -31.81423 -29.25704 -28.18691 -26.84753 -24.90483 -24.18500 -21.09614 -20.41235 -20.13940 -19.90205 -18.23495 -17.27938 -16.79022 -16.06663 -15.69345 -14.82408 -14.63982 -14.44259 -14.26312 -14.05641 -13.67306 -13.20854 -12.79239 -12.68063 -12.44203 -12.17295 -11.81488 -11.39723 -11.01240 -10.94325 -10.77166 -10.39236 -10.10005 -9.94720 -9.88119 -9.81093 -9.72385 -9.36568 -9.05180 -8.78087 -8.58682 -6.85413 -5.74099 -3.06424 0.53474 1.20042 1.58303 2.68433 2.69421 3.33425 3.41522 3.46913 3.48373 4.16421 4.47608 4.50773 4.80562 4.86988 5.08679 5.17846 5.28370 5.42225 5.52954 5.57364 5.72183 5.77029 5.98719 6.15548 6.29093 6.38869 6.55058 6.67094 6.93696 7.49622 7.54229 7.57589 7.63954 7.80047 8.22855 8.33636 9.20142 9.80288 10.45380 11.38232 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.034628 B = 0.003297 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.404556 B = 8491.152012 C = 8936.227132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.149 4.149 12 C 0.126 3.874 13 H 0.097 0.903 14 N -0.715 5.715 15 C 0.509 3.491 16 O -0.529 6.529 17 C -0.065 4.065 18 C -0.195 4.195 19 C 0.043 3.957 20 N -0.470 5.470 21 C 0.013 3.987 22 S 0.131 5.869 23 C 0.130 3.870 24 H 0.253 0.747 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.398 0.602 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.174 0.826 33 H 0.198 0.802 34 H 0.042 0.958 35 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.216 -21.761 -2.933 21.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.053 3.947 11 C -0.188 4.188 12 C 0.021 3.979 13 H 0.115 0.885 14 N -0.366 5.366 15 C 0.294 3.706 16 O -0.405 6.405 17 C -0.108 4.108 18 C -0.317 4.317 19 C -0.108 4.108 20 N -0.183 5.183 21 C -0.284 4.284 22 S 0.383 5.617 23 C 0.002 3.998 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.232 0.768 30 H 0.134 0.866 31 H 0.124 0.876 32 H 0.191 0.809 33 H 0.214 0.786 34 H 0.061 0.939 35 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 0.202 -21.445 -4.219 21.857 hybrid contribution 0.742 1.072 1.044 1.670 sum 0.944 -20.373 -3.176 20.641 Atomic orbital electron populations 1.69958 1.04927 1.25123 1.56850 1.24821 0.95735 0.97697 1.02062 0.86100 0.78696 0.83442 0.77562 1.21543 1.21751 1.20593 1.19076 0.91215 0.82433 1.42976 0.90355 1.44385 1.01637 1.00905 1.86152 1.21159 0.84644 0.87708 1.01177 1.23176 0.95735 1.00284 0.99598 1.22404 0.96898 0.77741 1.00829 0.88541 1.45976 1.51302 1.10271 1.29044 1.20374 0.79027 0.87864 0.83375 1.90757 1.46838 1.74969 1.27889 1.20075 1.00265 0.92737 0.97692 1.25305 0.97824 1.08290 1.00279 1.21700 0.91142 0.99952 0.97993 1.66296 1.38097 1.12128 1.01800 1.28326 0.92407 1.04757 1.02938 1.83938 1.11895 1.51367 1.14467 1.21899 0.94925 0.86688 0.96251 0.93713 0.93109 0.93734 0.92040 0.91660 0.76813 0.86622 0.87603 0.80859 0.78574 0.93929 0.96334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.02 10.36 55.49 0.57 -26.44 16 2 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 22.33 29.56 -169.99 -5.02 17.31 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.49 10.26 -15.06 -0.15 -6.65 16 8 H 0.08 2.17 7.84 -52.48 -0.41 1.76 16 9 N -0.60 -15.59 3.40 -169.76 -0.58 -16.17 16 10 C 0.18 4.24 5.38 -3.06 -0.02 4.22 16 11 C -0.15 -2.60 6.58 -24.90 -0.16 -2.76 16 12 C 0.13 2.23 3.45 -65.52 -0.23 2.00 16 13 H 0.10 1.93 7.54 -51.93 -0.39 1.54 16 14 N -0.72 -9.35 5.21 -51.48 -0.27 -9.62 16 15 C 0.51 6.91 7.82 -10.99 -0.09 6.83 16 16 O -0.53 -9.75 15.68 5.55 0.09 -9.66 16 17 C -0.07 -0.58 6.24 -29.03 -0.18 -0.76 16 18 C -0.20 -2.13 5.09 -35.92 -0.18 -2.31 16 19 C 0.04 0.51 11.25 -19.18 -0.22 0.30 16 20 N -0.47 -5.89 10.54 -15.75 -0.17 -6.05 16 21 C 0.01 0.13 12.23 51.58 0.63 0.76 16 22 S 0.13 1.26 23.22 -107.50 -2.50 -1.24 16 23 C 0.13 2.77 6.95 -2.26 -0.02 2.75 16 24 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.05 1.34 7.30 -51.93 -0.38 0.97 16 26 H 0.04 1.16 7.61 -51.93 -0.40 0.76 16 27 H 0.06 0.94 8.00 -51.93 -0.42 0.52 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.40 3.81 8.57 -40.82 -0.35 3.46 16 30 H 0.12 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.17 1.79 8.06 -52.49 -0.42 1.36 16 33 H 0.20 1.25 8.06 -52.48 -0.42 0.83 16 34 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 312.01 15.07 4.70 4.70 Total: -1.00 -34.78 312.01 -8.31 -43.09 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.44 Total: 0.00 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -0.71 Total: 4.08 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.44 Total: -58.28 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.50 Total: -1.24 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.78 -8.31 -43.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014821913.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.978 kcal (2) G-P(sol) polarization free energy of solvation -34.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds