Wall clock time and date at job start Tue Mar 31 2020 05:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.28652 * 124.72014 * 2 1 4 4 C 1.33553 * 115.76557 * 180.18626 * 3 2 1 5 5 C 1.47269 * 123.14021 * 179.82628 * 4 3 2 6 6 O 1.21633 * 120.00004 * 179.70607 * 5 4 3 7 7 N 1.34777 * 120.00021 * 359.71048 * 5 4 3 8 8 C 1.46498 * 119.99828 * 180.27620 * 7 5 4 9 9 H 1.08995 * 110.88814 * 30.83840 * 8 7 5 10 10 C 1.55161 * 111.00437 * 154.72466 * 8 7 5 11 11 C 1.54319 * 102.94308 * 153.57739 * 10 8 7 12 12 N 1.47028 * 107.26947 * 337.80091 * 11 10 8 13 13 C 1.36936 * 125.64804 * 178.96334 * 12 11 10 14 14 H 1.07997 * 120.00016 * 179.97438 * 13 12 11 15 15 C 1.38817 * 119.99743 * 359.97438 * 13 12 11 16 16 N 1.31614 * 120.00135 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99874 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47098 * 59.99670 * 17 15 13 19 19 H 1.48496 * 109.47313 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47290 * 299.99903 * 17 15 13 21 21 C 1.47419 * 108.70371 * 358.94679 * 12 11 10 22 22 C 1.35210 * 113.71667 * 359.56088 * 4 3 2 23 23 S 1.70765 * 124.72025 * 179.72839 * 2 1 3 24 24 H 1.08996 * 109.47018 * 180.29254 * 1 2 3 25 25 H 1.08994 * 109.47219 * 300.29588 * 1 2 3 26 26 H 1.09004 * 109.46750 * 60.29864 * 1 2 3 27 27 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 28 28 H 1.09005 * 110.71787 * 271.93592 * 10 8 7 29 29 H 1.08999 * 110.71833 * 35.02775 * 10 8 7 30 30 H 1.08999 * 109.88838 * 97.22424 * 11 10 8 31 31 H 1.09003 * 109.87868 * 218.38922 * 11 10 8 32 32 H 0.97008 * 120.00069 * 180.02562 * 16 15 13 33 33 H 1.09002 * 110.36625 * 265.29189 * 21 12 11 34 34 H 1.08996 * 110.36984 * 142.96546 * 21 12 11 35 35 H 1.08008 * 125.58056 * 180.26747 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2398 1.0574 0.0000 4 6 3.5590 0.8496 -0.0039 5 6 4.5462 1.9424 -0.0083 6 8 5.7356 1.6875 -0.0063 7 7 4.1319 3.2248 -0.0143 8 6 5.1139 4.3118 -0.0248 9 1 6.0211 4.0109 -0.5486 10 6 4.5124 5.5989 -0.6486 11 6 5.3364 6.7223 0.0149 12 7 5.8927 6.1773 1.2620 13 6 6.7023 6.8518 2.1365 14 1 7.0601 6.3609 3.0295 15 6 7.0631 8.1666 1.8753 16 7 6.6274 8.7647 0.7868 17 14 8.1669 9.0869 3.0686 18 1 9.4650 8.3761 3.1909 19 1 8.4024 10.4634 2.5639 20 1 7.5112 9.1525 4.3994 21 6 5.4342 4.7847 1.4152 22 6 3.9036 -0.4579 0.0022 23 16 2.4796 -1.4036 0.0067 24 1 -0.3633 -1.0276 0.0052 25 1 -0.3633 0.5184 0.8873 26 1 -0.3633 0.5092 -0.8927 27 1 3.1834 3.4280 -0.0162 28 1 4.6522 5.6051 -1.7296 29 1 3.4558 5.6918 -0.3973 30 1 6.1448 7.0304 -0.6482 31 1 4.6920 7.5729 0.2371 32 1 6.8799 9.6833 0.6041 33 1 4.5384 4.7462 2.0351 34 1 6.2235 4.1710 1.8493 35 1 4.9131 -0.8417 0.0046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015608411.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:29 Heat of formation + Delta-G solvation = 8.594974 kcal Electronic energy + Delta-G solvation = -19217.006305 eV Core-core repulsion = 16148.517146 eV Total energy + Delta-G solvation = -3068.489160 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.61457 -40.08725 -38.80632 -35.69788 -33.82907 -33.21634 -31.07594 -29.30744 -29.11391 -26.90523 -25.62395 -22.73083 -22.07481 -21.77998 -20.85727 -19.80236 -18.96883 -17.62532 -17.32219 -16.71719 -16.57460 -16.06263 -15.92875 -15.37430 -15.20933 -14.60405 -14.33364 -14.20990 -14.02075 -13.74575 -13.36451 -13.03101 -13.00900 -12.96315 -12.75831 -12.47370 -12.18969 -12.09125 -11.83962 -11.63627 -11.30528 -10.84122 -10.73529 -10.64039 -10.26493 -9.81059 -8.95570 -7.88096 -5.25099 -0.50916 0.26695 0.57869 0.87780 1.44629 1.48751 1.55020 2.06526 2.24172 2.49162 2.96362 3.30175 3.62694 3.69839 3.87264 3.99795 4.12200 4.14943 4.27520 4.52813 4.57411 4.66531 4.76176 4.80600 4.85650 4.92169 5.01017 5.22146 5.38769 5.43353 5.60051 5.69961 6.15283 6.26934 6.59716 7.05443 7.07791 7.71138 8.35344 9.21926 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.039380 B = 0.003291 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.844750 B = 8506.538699 C = 8738.986341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.015 3.985 3 N -0.473 5.473 4 C -0.011 4.011 5 C 0.587 3.413 6 O -0.575 6.575 7 N -0.687 5.687 8 C 0.143 3.857 9 H 0.081 0.919 10 C -0.128 4.128 11 C 0.186 3.814 12 N -0.625 5.625 13 C -0.252 4.252 14 H 0.078 0.922 15 C -0.062 4.062 16 N -0.948 5.948 17 Si 0.983 3.017 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.276 1.276 21 C 0.130 3.870 22 C -0.244 4.244 23 S 0.297 5.703 24 H 0.109 0.891 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.418 0.582 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.017 0.983 31 H 0.019 0.981 32 H 0.250 0.750 33 H 0.028 0.972 34 H 0.028 0.972 35 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.807 -22.432 -3.994 27.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.264 4.264 3 N -0.190 5.190 4 C -0.146 4.146 5 C 0.372 3.628 6 O -0.455 6.455 7 N -0.337 5.337 8 C 0.037 3.963 9 H 0.099 0.901 10 C -0.167 4.167 11 C 0.061 3.939 12 N -0.352 5.352 13 C -0.381 4.381 14 H 0.096 0.904 15 C -0.255 4.255 16 N -0.597 5.597 17 Si 0.810 3.190 18 H -0.205 1.205 19 H -0.215 1.215 20 H -0.202 1.202 21 C 0.003 3.997 22 C -0.387 4.387 23 S 0.555 5.445 24 H 0.127 0.873 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.255 0.745 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.035 0.965 31 H 0.037 0.963 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -15.363 -22.920 -3.969 27.877 hybrid contribution 1.359 1.850 0.599 2.373 sum -14.004 -21.070 -3.370 25.523 Atomic orbital electron populations 1.20646 0.82045 1.05677 1.05270 1.27842 1.03990 0.91785 1.02816 1.66873 1.02436 1.33134 1.16532 1.20118 0.90263 0.93194 1.11000 1.17571 0.86916 0.82680 0.75641 1.90796 1.17808 1.84387 1.52467 1.45626 1.10916 1.04298 1.72817 1.21923 0.92030 0.86076 0.96286 0.90103 1.23006 1.00263 0.92707 1.00700 1.20936 0.94058 0.92732 0.86177 1.44669 1.57251 1.09360 1.23938 1.19408 1.22194 0.94894 1.01593 0.90414 1.25678 1.02296 0.97681 0.99829 1.70153 1.49658 1.12453 1.27392 0.85099 0.78543 0.77235 0.78105 1.20467 1.21509 1.20152 1.21891 0.96733 0.85583 0.95475 1.26871 1.08213 0.97082 1.06551 1.82456 0.91088 1.08698 1.62263 0.87278 0.88796 0.88568 0.74466 0.89140 0.89375 0.96471 0.96292 0.94106 0.95410 0.95396 0.79287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.47 71.24 0.75 0.20 16 2 C 0.01 0.23 7.34 88.57 0.65 0.88 16 3 N -0.47 -11.01 10.12 -180.83 -1.83 -12.84 16 4 C -0.01 -0.29 6.70 40.56 0.27 -0.02 16 5 C 0.59 20.18 7.80 86.62 0.68 20.86 16 6 O -0.57 -23.73 16.35 -4.14 -0.07 -23.79 16 7 N -0.69 -22.57 5.19 -439.35 -2.28 -24.85 16 8 C 0.14 5.60 3.43 46.39 0.16 5.76 16 9 H 0.08 3.49 7.53 -2.39 -0.02 3.47 16 10 C -0.13 -4.79 6.60 31.78 0.21 -4.58 16 11 C 0.19 9.48 5.37 86.73 0.47 9.94 16 12 N -0.63 -34.36 3.39 -691.99 -2.35 -36.71 16 13 C -0.25 -14.98 10.28 84.03 0.86 -14.11 16 14 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 15 C -0.06 -3.62 5.49 84.86 0.47 -3.16 16 16 N -0.95 -58.10 10.31 21.65 0.22 -57.88 16 17 Si 0.98 47.15 29.55 68.60 2.03 49.18 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 C 0.13 6.01 6.93 86.86 0.60 6.61 16 22 C -0.24 -5.19 10.62 67.12 0.71 -4.48 16 23 S 0.30 3.56 22.90 -56.49 -1.29 2.27 16 24 H 0.11 0.14 8.12 -2.39 -0.02 0.12 16 25 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.42 11.88 8.08 -92.71 -0.75 11.13 16 28 H 0.09 2.98 8.14 -2.38 -0.02 2.96 16 29 H 0.09 2.87 8.00 -2.39 -0.02 2.85 16 30 H 0.02 0.97 7.38 -2.39 -0.02 0.95 16 31 H 0.02 1.05 7.51 -2.39 -0.02 1.03 16 32 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 33 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 34 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.19 3.86 8.03 -2.91 -0.02 3.83 16 Total: -1.00 -76.03 311.67 0.61 -75.42 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.37 Total: 11.31 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 5.82 Total: 17.90 kcal Atomic # 7 Polarization: -126.05 SS G_CDS: -6.24 Total: -132.29 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.07 Total: -23.79 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -1.29 Total: 2.27 kcal Total: -76.03 0.61 -75.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015608411.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.012 kcal (2) G-P(sol) polarization free energy of solvation -76.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds