Wall clock time and date at job start Tue Mar 31 2020 05:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29512 * 121.53070 * 2 1 4 4 S 1.69481 * 107.84291 * 180.21311 * 3 2 1 5 5 C 1.72016 * 96.02812 * 359.74947 * 4 3 2 6 6 C 1.37903 * 105.36265 * 359.97438 * 5 4 3 7 7 C 1.47336 * 123.08645 * 179.97438 * 6 5 4 8 8 O 1.21610 * 120.00339 * 185.81612 * 7 6 5 9 9 N 1.34783 * 119.99972 * 5.54264 * 7 6 5 10 10 C 1.47027 * 125.64620 * 355.30779 * 9 7 6 11 11 C 1.54337 * 107.26195 * 178.85126 * 10 9 7 12 12 C 1.55153 * 103.02034 * 338.13794 * 11 10 9 13 13 H 1.08998 * 111.00794 * 277.23367 * 12 11 10 14 14 N 1.46508 * 111.00225 * 153.38485 * 12 11 10 15 15 C 1.36934 * 120.00026 * 161.35324 * 14 12 11 16 16 H 1.08005 * 119.99985 * 359.97438 * 15 14 12 17 17 C 1.38810 * 119.99798 * 179.97438 * 15 14 12 18 18 N 1.31617 * 119.99756 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00043 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47127 * 90.00297 * 19 17 15 21 21 H 1.48501 * 109.47095 * 210.00082 * 19 17 15 22 22 H 1.48496 * 109.47161 * 330.00249 * 19 17 15 23 23 C 1.47420 * 125.64767 * 175.61544 * 9 7 6 24 24 H 1.09001 * 109.47085 * 270.24572 * 1 2 3 25 25 H 1.09005 * 109.47084 * 30.24816 * 1 2 3 26 26 H 1.09001 * 109.46737 * 150.24570 * 1 2 3 27 27 H 1.08001 * 127.31721 * 180.02562 * 5 4 3 28 28 H 1.08995 * 109.88037 * 298.39307 * 10 9 7 29 29 H 1.09000 * 109.88137 * 59.56239 * 10 9 7 30 30 H 1.09003 * 110.84325 * 219.67577 * 11 10 9 31 31 H 1.08996 * 110.51609 * 96.45718 * 11 10 9 32 32 H 0.96996 * 119.99374 * 341.34773 * 14 12 11 33 33 H 0.97006 * 120.00113 * 180.02562 * 18 17 15 34 34 H 1.09001 * 110.36794 * 322.92923 * 23 9 7 35 35 H 1.09003 * 110.36855 * 85.14666 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8310 0.7029 -0.0060 5 6 3.6017 -1.0019 -0.0011 6 6 2.2352 -1.1868 0.0057 7 6 1.6036 -2.5179 0.0110 8 8 0.3959 -2.6184 -0.0898 9 7 2.3649 -3.6246 0.1222 10 6 3.8346 -3.6546 0.1472 11 6 4.2598 -5.1286 0.3160 12 6 2.9994 -5.7871 0.9363 13 1 2.9692 -5.6338 2.0150 14 7 2.9373 -7.2138 0.6089 15 6 2.1455 -8.0520 1.3475 16 1 1.5669 -7.6614 2.1717 17 6 2.0863 -9.4036 1.0370 18 7 1.3255 -10.2093 1.7472 19 14 3.0863 -10.0790 -0.3889 20 1 4.4222 -10.5042 0.1009 21 1 2.3814 -11.2450 -0.9795 22 1 3.2504 -9.0247 -1.4217 23 6 1.8619 -5.0059 0.2324 24 1 -0.3633 0.0044 1.0277 25 1 -0.3633 0.8878 -0.5177 26 1 -0.3633 -0.8922 -0.5100 27 1 4.3657 -1.7653 -0.0022 28 1 4.2294 -3.2576 -0.7879 29 1 4.2032 -3.0659 0.9873 30 1 5.1108 -5.2118 0.9921 31 1 4.4903 -5.5729 -0.6522 32 1 3.4571 -7.5646 -0.1311 33 1 1.2844 -11.1539 1.5305 34 1 0.9541 -5.0321 0.8352 35 1 1.6711 -5.4203 -0.7576 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018741305.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:14 Heat of formation + Delta-G solvation = 41.194980 kcal Electronic energy + Delta-G solvation = -19553.900112 eV Core-core repulsion = 16486.824594 eV Total energy + Delta-G solvation = -3067.075517 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.61496 -38.67699 -37.25160 -34.53494 -32.41367 -31.31920 -30.12247 -29.64994 -27.90953 -25.34609 -23.56413 -22.34645 -21.13392 -20.15994 -19.65520 -18.04763 -17.53764 -16.67323 -16.30179 -15.44173 -15.16655 -14.87443 -14.42622 -13.89397 -13.81089 -13.52788 -13.35949 -12.74639 -12.73722 -12.56544 -12.48282 -12.37053 -11.86512 -11.48374 -11.31554 -10.99346 -10.89358 -10.83789 -10.59130 -10.16880 -9.98093 -9.73032 -9.68620 -9.11786 -8.96346 -8.53062 -7.45485 -5.87894 -3.26964 0.19392 1.12321 1.50718 1.67989 2.96761 3.17842 3.29402 3.31302 3.38706 4.23112 4.46094 4.48345 4.58863 4.73228 4.89033 5.00999 5.10539 5.21336 5.24864 5.43526 5.49594 5.54455 5.61407 5.68809 5.75358 5.99242 6.06376 6.13454 6.34199 6.39221 6.49034 6.66550 7.54203 7.85493 8.15325 8.30236 9.06231 9.77899 9.94917 11.29647 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.035065 B = 0.003827 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.332993 B = 7314.023775 C = 7846.839630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.167 3.833 3 N -0.471 5.471 4 S 0.272 5.728 5 C -0.189 4.189 6 C -0.203 4.203 7 C 0.594 3.406 8 O -0.530 6.530 9 N -0.604 5.604 10 C 0.093 3.907 11 C -0.145 4.145 12 C 0.177 3.823 13 H 0.075 0.925 14 N -0.735 5.735 15 C -0.256 4.256 16 H 0.093 0.907 17 C 0.011 3.989 18 N -0.927 5.927 19 Si 0.884 3.116 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.277 1.277 23 C 0.084 3.916 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.115 0.885 27 H 0.208 0.792 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.365 0.635 33 H 0.262 0.738 34 H 0.079 0.921 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.028 20.083 -4.527 22.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.011 4.011 3 N -0.292 5.292 4 S 0.428 5.572 5 C -0.338 4.338 6 C -0.225 4.225 7 C 0.381 3.619 8 O -0.409 6.409 9 N -0.337 5.337 10 C -0.030 4.030 11 C -0.184 4.184 12 C 0.066 3.934 13 H 0.093 0.907 14 N -0.377 5.377 15 C -0.386 4.386 16 H 0.111 0.889 17 C -0.186 4.186 18 N -0.574 5.574 19 Si 0.714 3.286 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.040 4.040 24 H 0.102 0.898 25 H 0.091 0.909 26 H 0.133 0.867 27 H 0.224 0.776 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.198 0.802 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.067 22.022 -4.403 23.863 hybrid contribution 0.015 -2.245 -1.025 2.468 sum 8.082 19.777 -5.428 22.043 Atomic orbital electron populations 1.20989 0.85318 1.05411 1.04361 1.21485 0.99637 0.86620 0.93329 1.76483 1.00167 1.26213 1.26325 1.84021 1.11063 0.96339 1.65826 1.28398 1.00278 1.04622 1.00521 1.20437 0.92220 0.96143 1.13665 1.16934 0.85877 0.81994 0.77141 1.90715 1.13420 1.85886 1.50868 1.48340 1.06874 1.07238 1.71289 1.22421 0.81129 0.98794 1.00670 1.22992 0.99821 0.93059 1.02501 1.21281 0.90296 0.84220 0.97637 0.90749 1.42641 1.54843 1.02447 1.37731 1.19069 1.19758 0.89067 1.10660 0.88926 1.24688 0.99225 0.95985 0.98670 1.69699 1.41979 1.04326 1.41381 0.86563 0.80238 0.78736 0.83021 1.20917 1.21568 1.20286 1.23417 1.00536 0.78184 1.01910 0.89785 0.90855 0.86681 0.77589 0.91201 0.90913 0.89594 0.90416 0.80187 0.92829 0.90256 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 9.60 36.01 0.35 -0.81 16 2 C 0.17 2.12 6.75 -83.20 -0.56 1.56 16 3 N -0.47 -5.86 11.97 32.50 0.39 -5.47 16 4 S 0.27 2.54 23.69 -107.50 -2.55 -0.01 16 5 C -0.19 -1.79 9.70 30.61 0.30 -1.49 16 6 C -0.20 -2.55 5.85 -105.95 -0.62 -3.17 16 7 C 0.59 8.97 7.81 -12.56 -0.10 8.87 16 8 O -0.53 -9.47 14.03 5.27 0.07 -9.39 16 9 N -0.60 -8.60 3.33 -171.81 -0.57 -9.17 16 10 C 0.09 0.97 4.92 -3.05 -0.02 0.95 16 11 C -0.15 -1.76 6.57 -24.89 -0.16 -1.92 16 12 C 0.18 3.03 3.69 -65.78 -0.24 2.78 16 13 H 0.07 1.32 8.13 -51.93 -0.42 0.90 16 14 N -0.74 -15.91 5.08 -51.35 -0.26 -16.17 16 15 C -0.26 -6.83 10.47 -15.06 -0.16 -6.99 16 16 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 17 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 18 N -0.93 -28.22 13.97 55.49 0.78 -27.45 16 19 Si 0.88 21.00 27.73 -169.99 -4.71 16.28 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.12 6.52 56.52 0.37 -5.75 16 23 C 0.08 1.44 6.58 -2.53 -0.02 1.42 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.12 1.52 5.50 -51.93 -0.29 1.23 16 27 H 0.21 1.40 4.01 -52.49 -0.21 1.19 16 28 H 0.07 0.58 6.98 -51.93 -0.36 0.21 16 29 H 0.07 0.61 6.62 -51.93 -0.34 0.26 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.93 8.00 -51.93 -0.42 0.52 16 32 H 0.36 7.67 5.57 -40.82 -0.23 7.44 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.08 1.51 8.08 -51.93 -0.42 1.09 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 299.80 15.07 4.52 4.52 Total: -1.00 -31.97 299.80 -7.64 -39.60 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -3.97 Total: 5.84 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -1.33 Total: 1.42 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: 0.33 Total: -58.26 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.07 Total: -9.39 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.71 Total: 16.28 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -2.55 Total: -0.01 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.97 -7.64 -39.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018741305.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.796 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds