Wall clock time and date at job start Tue Mar 31 2020 05:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29512 * 121.53070 * 2 1 4 4 S 1.69481 * 107.84291 * 180.21311 * 3 2 1 5 5 C 1.72016 * 96.02812 * 359.74947 * 4 3 2 6 6 C 1.37903 * 105.36265 * 359.97438 * 5 4 3 7 7 C 1.47336 * 123.08645 * 179.97438 * 6 5 4 8 8 O 1.21610 * 120.00339 * 185.81612 * 7 6 5 9 9 N 1.34783 * 119.99972 * 5.54264 * 7 6 5 10 10 C 1.47027 * 125.64620 * 355.30779 * 9 7 6 11 11 C 1.54337 * 107.26195 * 178.85126 * 10 9 7 12 12 C 1.55153 * 103.02034 * 338.13794 * 11 10 9 13 13 H 1.08998 * 111.00794 * 277.23367 * 12 11 10 14 14 N 1.46508 * 111.00225 * 153.38485 * 12 11 10 15 15 C 1.36934 * 120.00026 * 161.35324 * 14 12 11 16 16 H 1.08005 * 119.99985 * 359.97438 * 15 14 12 17 17 C 1.38810 * 119.99798 * 179.97438 * 15 14 12 18 18 N 1.31617 * 119.99756 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00043 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47127 * 90.00297 * 19 17 15 21 21 H 1.48501 * 109.47095 * 210.00082 * 19 17 15 22 22 H 1.48496 * 109.47161 * 330.00249 * 19 17 15 23 23 C 1.47420 * 125.64767 * 175.61544 * 9 7 6 24 24 H 1.09001 * 109.47085 * 270.24572 * 1 2 3 25 25 H 1.09005 * 109.47084 * 30.24816 * 1 2 3 26 26 H 1.09001 * 109.46737 * 150.24570 * 1 2 3 27 27 H 1.08001 * 127.31721 * 180.02562 * 5 4 3 28 28 H 1.08995 * 109.88037 * 298.39307 * 10 9 7 29 29 H 1.09000 * 109.88137 * 59.56239 * 10 9 7 30 30 H 1.09003 * 110.84325 * 219.67577 * 11 10 9 31 31 H 1.08996 * 110.51609 * 96.45718 * 11 10 9 32 32 H 0.96996 * 119.99374 * 341.34773 * 14 12 11 33 33 H 0.97006 * 120.00113 * 180.02562 * 18 17 15 34 34 H 1.09001 * 110.36794 * 322.92923 * 23 9 7 35 35 H 1.09003 * 110.36855 * 85.14666 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8310 0.7029 -0.0060 5 6 3.6017 -1.0019 -0.0011 6 6 2.2352 -1.1868 0.0057 7 6 1.6036 -2.5179 0.0110 8 8 0.3959 -2.6184 -0.0898 9 7 2.3649 -3.6246 0.1222 10 6 3.8346 -3.6546 0.1472 11 6 4.2598 -5.1286 0.3160 12 6 2.9994 -5.7871 0.9363 13 1 2.9692 -5.6338 2.0150 14 7 2.9373 -7.2138 0.6089 15 6 2.1455 -8.0520 1.3475 16 1 1.5669 -7.6614 2.1717 17 6 2.0863 -9.4036 1.0370 18 7 1.3255 -10.2093 1.7472 19 14 3.0863 -10.0790 -0.3889 20 1 4.4222 -10.5042 0.1009 21 1 2.3814 -11.2450 -0.9795 22 1 3.2504 -9.0247 -1.4217 23 6 1.8619 -5.0059 0.2324 24 1 -0.3633 0.0044 1.0277 25 1 -0.3633 0.8878 -0.5177 26 1 -0.3633 -0.8922 -0.5100 27 1 4.3657 -1.7653 -0.0022 28 1 4.2294 -3.2576 -0.7879 29 1 4.2032 -3.0659 0.9873 30 1 5.1108 -5.2118 0.9921 31 1 4.4903 -5.5729 -0.6522 32 1 3.4571 -7.5646 -0.1311 33 1 1.2844 -11.1539 1.5305 34 1 0.9541 -5.0321 0.8352 35 1 1.6711 -5.4203 -0.7576 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018741305.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:13 Heat of formation + Delta-G solvation = 18.130770 kcal Electronic energy + Delta-G solvation = -19554.900251 eV Core-core repulsion = 16486.824594 eV Total energy + Delta-G solvation = -3068.075656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.66413 -39.72009 -38.45340 -36.16925 -33.88766 -32.72948 -31.37401 -30.56419 -29.26248 -26.50280 -25.15286 -23.48768 -22.30886 -21.46276 -20.58476 -19.79454 -18.61277 -17.82516 -17.53730 -16.54133 -16.38904 -16.04406 -15.78284 -15.35291 -15.02558 -14.73551 -14.49466 -14.38164 -13.89961 -13.85397 -13.41061 -13.35082 -13.30395 -12.94610 -12.56262 -12.40695 -12.08965 -12.03109 -11.84116 -11.76402 -11.59356 -11.04659 -10.89556 -10.78517 -9.90430 -9.60186 -9.36175 -8.02952 -5.39618 -0.62624 0.34126 0.67725 0.70258 1.39972 1.44800 1.51540 1.85029 2.11449 2.49233 3.26046 3.40395 3.45967 3.51458 3.81510 3.88379 4.03923 4.16805 4.25338 4.32346 4.37236 4.48724 4.57530 4.62529 4.67910 4.82784 4.95530 5.09723 5.17545 5.25820 5.33349 5.57225 5.76168 6.20514 6.44925 7.02167 7.06566 7.78837 7.98843 9.18277 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.035065 B = 0.003827 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.332993 B = 7314.023775 C = 7846.839630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.156 3.844 3 N -0.504 5.504 4 S 0.336 5.664 5 C -0.166 4.166 6 C -0.231 4.231 7 C 0.590 3.410 8 O -0.572 6.572 9 N -0.605 5.605 10 C 0.088 3.912 11 C -0.130 4.130 12 C 0.167 3.833 13 H 0.063 0.937 14 N -0.737 5.737 15 C -0.240 4.240 16 H 0.054 0.946 17 C -0.062 4.062 18 N -0.984 5.984 19 Si 0.959 3.041 20 H -0.272 1.272 21 H -0.301 1.301 22 H -0.247 1.247 23 C 0.094 3.906 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.240 0.760 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.372 0.628 33 H 0.258 0.742 34 H 0.043 0.957 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.910 22.027 -6.065 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.021 4.021 3 N -0.326 5.326 4 S 0.492 5.508 5 C -0.315 4.315 6 C -0.252 4.252 7 C 0.378 3.622 8 O -0.454 6.454 9 N -0.337 5.337 10 C -0.034 4.034 11 C -0.168 4.168 12 C 0.057 3.943 13 H 0.081 0.919 14 N -0.379 5.379 15 C -0.371 4.371 16 H 0.072 0.928 17 C -0.253 4.253 18 N -0.633 5.633 19 Si 0.785 3.215 20 H -0.198 1.198 21 H -0.228 1.228 22 H -0.171 1.171 23 C -0.032 4.032 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.113 0.887 27 H 0.255 0.745 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.105 0.895 32 H 0.206 0.794 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.999 24.043 -5.955 27.523 hybrid contribution -1.163 -2.689 -0.467 2.967 sum 10.835 21.354 -6.422 24.792 Atomic orbital electron populations 1.20895 0.85781 1.04925 1.04253 1.21491 0.99869 0.86936 0.93760 1.76316 1.02476 1.26629 1.27159 1.83857 1.08245 0.95138 1.63595 1.28782 0.99425 1.05918 0.97325 1.20160 0.93484 0.94390 1.17131 1.17356 0.85545 0.83000 0.76307 1.90700 1.15385 1.86601 1.52715 1.48318 1.08718 1.05608 1.71082 1.22798 0.78391 0.98310 1.03881 1.22957 0.97630 0.93223 1.03020 1.21453 0.93323 0.82073 0.97473 0.91881 1.42552 1.54106 1.03873 1.37381 1.19004 1.18821 0.89766 1.09479 0.92826 1.25571 1.01154 0.96414 1.02193 1.69902 1.44798 1.04524 1.44097 0.85369 0.78357 0.78007 0.79756 1.19807 1.22816 1.17118 1.22980 0.99349 0.80508 1.00395 0.89786 0.89694 0.88652 0.74453 0.87582 0.87844 0.86927 0.89460 0.79376 0.93278 0.93863 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.33 9.60 71.24 0.68 -1.64 16 2 C 0.16 3.80 6.75 43.14 0.29 4.09 16 3 N -0.50 -11.49 11.97 -51.10 -0.61 -12.11 16 4 S 0.34 4.92 23.69 -56.49 -1.34 3.58 16 5 C -0.17 -2.39 9.70 67.74 0.66 -1.74 16 6 C -0.23 -5.31 5.85 -20.72 -0.12 -5.43 16 7 C 0.59 17.50 7.81 86.64 0.68 18.18 16 8 O -0.57 -21.35 14.03 -4.06 -0.06 -21.40 16 9 N -0.60 -16.26 3.33 -815.73 -2.71 -18.97 16 10 C 0.09 1.40 4.92 86.73 0.43 1.83 16 11 C -0.13 -2.59 6.57 31.79 0.21 -2.38 16 12 C 0.17 5.52 3.69 46.38 0.17 5.69 16 13 H 0.06 2.23 8.13 -2.39 -0.02 2.21 16 14 N -0.74 -31.29 5.08 -316.36 -1.61 -32.90 16 15 C -0.24 -13.13 10.47 84.03 0.88 -12.25 16 16 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 17 C -0.06 -3.52 5.50 84.86 0.47 -3.06 16 18 N -0.98 -62.16 13.97 21.65 0.30 -61.86 16 19 Si 0.96 43.22 27.73 68.60 1.90 45.12 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 21 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 22 H -0.25 -9.78 6.52 99.48 0.65 -9.13 16 23 C 0.09 3.24 6.58 86.86 0.57 3.81 16 24 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.10 2.68 5.50 -2.39 -0.01 2.67 16 27 H 0.24 1.67 4.01 -2.91 -0.01 1.66 16 28 H 0.11 1.04 6.98 -2.39 -0.02 1.02 16 29 H 0.10 1.09 6.62 -2.39 -0.02 1.07 16 30 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.09 1.64 8.00 -2.39 -0.02 1.62 16 32 H 0.37 14.70 5.57 -92.71 -0.52 14.18 16 33 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 34 H 0.04 1.77 8.08 -2.39 -0.02 1.75 16 35 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -74.73 299.80 1.35 -73.38 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.56 Total: 18.07 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 4.91 Total: 7.10 kcal Atomic # 7 Polarization: -121.21 SS G_CDS: -4.63 Total: -125.84 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.06 Total: -21.40 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.90 Total: 45.12 kcal Atomic # 16 Polarization: 4.92 SS G_CDS: -1.34 Total: 3.58 kcal Total: -74.73 1.35 -73.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018741305.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.512 kcal (2) G-P(sol) polarization free energy of solvation -74.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds