Wall clock time and date at job start Tue Mar 31 2020 05:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35005 * 127.27779 * 2 1 4 4 C 1.39479 * 111.68601 * 180.17060 * 3 2 1 5 5 C 1.47698 * 122.10441 * 179.78303 * 4 3 2 6 6 O 1.21572 * 119.99516 * 359.74097 * 5 4 3 7 7 N 1.34774 * 119.99971 * 179.73463 * 5 4 3 8 8 C 1.47018 * 125.65189 * 0.02777 * 7 5 4 9 9 C 1.54319 * 107.27132 * 178.91585 * 8 7 5 10 10 C 1.55150 * 102.94588 * 337.80878 * 9 8 7 11 11 H 1.09006 * 111.00300 * 277.39064 * 10 9 8 12 12 N 1.46496 * 111.00982 * 153.57493 * 10 9 8 13 13 C 1.36934 * 120.00548 * 154.99761 * 12 10 9 14 14 H 1.08004 * 119.99288 * 0.02562 * 13 12 10 15 15 C 1.38805 * 120.00389 * 180.02562 * 13 12 10 16 16 N 1.31624 * 120.00257 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47174 * 270.00277 * 17 15 13 19 19 H 1.48501 * 109.47062 * 30.00228 * 17 15 13 20 20 H 1.48499 * 109.46981 * 150.00382 * 17 15 13 21 21 C 1.47428 * 125.64458 * 180.02562 * 7 5 4 22 22 N 1.30610 * 115.79561 * 359.51052 * 4 3 2 23 23 S 1.56141 * 109.79359 * 0.27504 * 22 4 3 24 24 H 1.08998 * 109.47041 * 180.29248 * 1 2 3 25 25 H 1.08995 * 109.47091 * 300.29206 * 1 2 3 26 26 H 1.08999 * 109.47127 * 60.29405 * 1 2 3 27 27 H 1.08001 * 124.15400 * 359.97058 * 3 2 1 28 28 H 1.09009 * 109.88120 * 59.49823 * 8 7 5 29 29 H 1.09000 * 109.88178 * 298.33780 * 8 7 5 30 30 H 1.09007 * 110.72211 * 219.44221 * 9 8 7 31 31 H 1.08997 * 110.87078 * 96.24559 * 9 8 7 32 32 H 0.96999 * 119.99694 * 335.00285 * 12 10 9 33 33 H 0.97001 * 119.99885 * 179.97438 * 16 15 13 34 34 H 1.08993 * 110.36761 * 85.31534 * 21 7 5 35 35 H 1.08999 * 110.36204 * 322.98683 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.0742 0.0000 4 6 3.6682 0.6994 -0.0039 5 6 4.7605 1.6935 -0.0094 6 8 4.5013 2.8812 -0.0155 7 7 6.0445 1.2838 -0.0076 8 6 6.4977 -0.1148 -0.0009 9 6 8.0405 -0.0965 -0.0291 10 6 8.3609 1.3014 -0.6210 11 1 8.3011 1.2879 -1.7093 12 7 9.6750 1.7717 -0.1759 13 6 10.3694 2.6788 -0.9308 14 1 9.9480 3.0480 -1.8542 15 6 11.6148 3.1240 -0.5093 16 7 12.2820 3.9964 -1.2347 17 14 12.3431 2.4860 1.0882 18 1 11.9251 3.3659 2.2090 19 1 11.8585 1.1044 1.3362 20 1 13.8248 2.4807 0.9893 21 6 7.2271 2.1640 -0.0120 22 7 3.8996 -0.5861 0.0033 23 16 2.5473 -1.3667 0.0076 24 1 -0.3633 -1.0276 0.0052 25 1 -0.3633 0.5183 0.8873 26 1 -0.3633 0.5093 -0.8926 27 1 1.9808 2.0980 -0.0005 28 1 6.1169 -0.6321 -0.8816 29 1 6.1493 -0.6130 0.9037 30 1 8.4239 -0.8861 -0.6755 31 1 8.4484 -0.1919 0.9772 32 1 10.0532 1.4403 0.6536 33 1 13.1521 4.3077 -0.9399 34 1 7.4818 2.4624 1.0049 35 1 7.0441 3.0420 -0.6314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018772267.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:03 Heat of formation + Delta-G solvation = 30.530543 kcal Electronic energy + Delta-G solvation = -19287.579518 eV Core-core repulsion = 16220.041556 eV Total energy + Delta-G solvation = -3067.537962 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.56485 -38.72498 -37.19727 -34.35856 -33.50043 -31.62081 -29.91774 -28.49011 -28.16663 -25.74010 -23.46471 -22.35105 -20.82021 -20.22378 -19.31601 -18.47379 -17.77526 -16.69353 -16.20277 -15.60259 -15.19550 -14.41293 -14.39285 -13.91192 -13.77244 -13.29804 -13.25834 -13.16220 -12.99078 -12.70726 -12.46196 -12.37696 -11.89359 -11.35412 -11.24804 -11.13378 -10.85944 -10.69637 -10.43540 -10.07506 -9.87994 -9.72938 -9.63979 -9.05144 -9.02197 -8.38087 -7.38452 -5.82537 -3.20738 0.37312 1.16664 1.61135 1.62811 3.09869 3.27101 3.34369 3.37338 3.42886 4.28616 4.53895 4.59406 4.84377 4.91840 4.93624 5.10584 5.20326 5.25997 5.38067 5.50217 5.53636 5.58766 5.63140 5.78670 5.91940 5.98577 6.11864 6.17029 6.30251 6.48307 6.54855 6.76288 7.65777 7.91903 8.20761 8.36013 9.12367 9.84217 10.02219 11.35157 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.042875 B = 0.003544 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.910572 B = 7898.558149 C = 8262.279106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.248 4.248 3 C -0.142 4.142 4 C 0.064 3.936 5 C 0.596 3.404 6 O -0.534 6.534 7 N -0.594 5.594 8 C 0.119 3.881 9 C -0.148 4.148 10 C 0.177 3.823 11 H 0.077 0.923 12 N -0.735 5.735 13 C -0.253 4.253 14 H 0.093 0.907 15 C 0.009 3.991 16 N -0.929 5.929 17 Si 0.884 3.116 18 H -0.283 1.283 19 H -0.276 1.276 20 H -0.290 1.290 21 C 0.082 3.918 22 N -0.512 5.512 23 S 0.445 5.555 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.170 0.830 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.364 0.636 33 H 0.261 0.739 34 H 0.069 0.931 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.584 -14.017 3.678 27.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.378 4.378 3 C -0.174 4.174 4 C -0.110 4.110 5 C 0.379 3.621 6 O -0.411 6.411 7 N -0.327 5.327 8 C -0.004 4.004 9 C -0.187 4.187 10 C 0.066 3.934 11 H 0.095 0.905 12 N -0.376 5.376 13 C -0.383 4.383 14 H 0.111 0.889 15 C -0.187 4.187 16 N -0.576 5.576 17 Si 0.714 3.286 18 H -0.209 1.209 19 H -0.202 1.202 20 H -0.216 1.216 21 C -0.043 4.043 22 N -0.346 5.346 23 S 0.601 5.399 24 H 0.091 0.909 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.188 0.812 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.198 0.802 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.887 -15.184 3.494 27.687 hybrid contribution 0.273 1.562 1.181 1.977 sum -22.614 -13.623 4.675 26.811 Atomic orbital electron populations 1.20198 0.86149 1.03244 1.03568 1.26075 1.03249 1.00085 1.08440 1.21242 0.90300 1.01997 1.03892 1.21119 0.94897 0.89252 1.05749 1.16890 0.80759 0.86569 0.77893 1.90809 1.82791 1.16013 1.51476 1.48329 1.04862 1.09360 1.70158 1.22012 0.94234 0.82069 1.02131 1.23051 0.93577 0.99743 1.02303 1.21285 0.84702 0.89709 0.97748 0.90493 1.42651 1.16412 1.52232 1.26280 1.19098 0.99062 1.15951 1.04172 0.88936 1.24686 0.97033 0.98759 0.98251 1.69704 1.14691 1.34267 1.38930 0.86558 0.78729 0.78662 0.84624 1.20939 1.20214 1.21607 1.23430 0.83887 0.94923 1.02069 1.72605 1.27778 1.10753 1.23489 1.80505 0.88192 1.12947 1.58289 0.90896 0.90153 0.90116 0.81216 0.90990 0.91375 0.89971 0.90846 0.80223 0.92894 0.91283 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.46 36.01 0.38 0.01 16 2 C -0.25 -2.11 6.58 -35.46 -0.23 -2.34 16 3 C -0.14 -1.63 9.92 -40.27 -0.40 -2.03 16 4 C 0.06 0.90 6.61 -84.06 -0.56 0.34 16 5 C 0.60 10.27 7.84 -12.40 -0.10 10.17 16 6 O -0.53 -10.69 16.91 5.30 0.09 -10.60 16 7 N -0.59 -10.02 3.33 -171.67 -0.57 -10.59 16 8 C 0.12 1.69 5.45 -3.07 -0.02 1.68 16 9 C -0.15 -2.22 6.60 -24.90 -0.16 -2.38 16 10 C 0.18 3.38 3.71 -65.78 -0.24 3.13 16 11 H 0.08 1.52 8.09 -51.93 -0.42 1.09 16 12 N -0.73 -16.97 5.05 -51.34 -0.26 -17.23 16 13 C -0.25 -7.04 10.44 -15.06 -0.16 -7.19 16 14 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 15 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 16 N -0.93 -28.99 13.97 55.49 0.78 -28.22 16 17 Si 0.88 21.77 27.74 -169.99 -4.71 17.05 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 C 0.08 1.54 6.60 -2.51 -0.02 1.53 16 22 N -0.51 -6.31 8.21 24.84 0.20 -6.10 16 23 S 0.45 3.76 23.20 -107.50 -2.49 1.27 16 24 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.17 1.88 7.99 -52.49 -0.42 1.46 16 28 H 0.07 0.98 7.51 -51.92 -0.39 0.59 16 29 H 0.07 0.92 7.62 -51.93 -0.40 0.52 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 1.08 8.00 -51.93 -0.42 0.66 16 32 H 0.36 8.20 5.62 -40.82 -0.23 7.97 16 33 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.08 1.62 8.04 -51.93 -0.42 1.20 16 LS Contribution 308.80 15.07 4.65 4.65 Total: -1.00 -33.19 308.80 -8.31 -41.50 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -4.39 Total: 5.18 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -1.60 Total: 3.08 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: 0.15 Total: -62.14 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.05 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -2.49 Total: 1.27 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.19 -8.31 -41.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018772267.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.032 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds