Wall clock time and date at job start Tue Mar 31 2020 05:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35005 * 127.27779 * 2 1 4 4 C 1.39479 * 111.68601 * 180.17060 * 3 2 1 5 5 C 1.47698 * 122.10441 * 179.78303 * 4 3 2 6 6 O 1.21572 * 119.99516 * 359.74097 * 5 4 3 7 7 N 1.34774 * 119.99971 * 179.73463 * 5 4 3 8 8 C 1.47018 * 125.65189 * 0.02777 * 7 5 4 9 9 C 1.54319 * 107.27132 * 178.91585 * 8 7 5 10 10 C 1.55150 * 102.94588 * 337.80878 * 9 8 7 11 11 H 1.09006 * 111.00300 * 277.39064 * 10 9 8 12 12 N 1.46496 * 111.00982 * 153.57493 * 10 9 8 13 13 C 1.36934 * 120.00548 * 154.99761 * 12 10 9 14 14 H 1.08004 * 119.99288 * 0.02562 * 13 12 10 15 15 C 1.38805 * 120.00389 * 180.02562 * 13 12 10 16 16 N 1.31624 * 120.00257 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47174 * 270.00277 * 17 15 13 19 19 H 1.48501 * 109.47062 * 30.00228 * 17 15 13 20 20 H 1.48499 * 109.46981 * 150.00382 * 17 15 13 21 21 C 1.47428 * 125.64458 * 180.02562 * 7 5 4 22 22 N 1.30610 * 115.79561 * 359.51052 * 4 3 2 23 23 S 1.56141 * 109.79359 * 0.27504 * 22 4 3 24 24 H 1.08998 * 109.47041 * 180.29248 * 1 2 3 25 25 H 1.08995 * 109.47091 * 300.29206 * 1 2 3 26 26 H 1.08999 * 109.47127 * 60.29405 * 1 2 3 27 27 H 1.08001 * 124.15400 * 359.97058 * 3 2 1 28 28 H 1.09009 * 109.88120 * 59.49823 * 8 7 5 29 29 H 1.09000 * 109.88178 * 298.33780 * 8 7 5 30 30 H 1.09007 * 110.72211 * 219.44221 * 9 8 7 31 31 H 1.08997 * 110.87078 * 96.24559 * 9 8 7 32 32 H 0.96999 * 119.99694 * 335.00285 * 12 10 9 33 33 H 0.97001 * 119.99885 * 179.97438 * 16 15 13 34 34 H 1.08993 * 110.36761 * 85.31534 * 21 7 5 35 35 H 1.08999 * 110.36204 * 322.98683 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.0742 0.0000 4 6 3.6682 0.6994 -0.0039 5 6 4.7605 1.6935 -0.0094 6 8 4.5013 2.8812 -0.0155 7 7 6.0445 1.2838 -0.0076 8 6 6.4977 -0.1148 -0.0009 9 6 8.0405 -0.0965 -0.0291 10 6 8.3609 1.3014 -0.6210 11 1 8.3011 1.2879 -1.7093 12 7 9.6750 1.7717 -0.1759 13 6 10.3694 2.6788 -0.9308 14 1 9.9480 3.0480 -1.8542 15 6 11.6148 3.1240 -0.5093 16 7 12.2820 3.9964 -1.2347 17 14 12.3431 2.4860 1.0882 18 1 11.9251 3.3659 2.2090 19 1 11.8585 1.1044 1.3362 20 1 13.8248 2.4807 0.9893 21 6 7.2271 2.1640 -0.0120 22 7 3.8996 -0.5861 0.0033 23 16 2.5473 -1.3667 0.0076 24 1 -0.3633 -1.0276 0.0052 25 1 -0.3633 0.5183 0.8873 26 1 -0.3633 0.5093 -0.8926 27 1 1.9808 2.0980 -0.0005 28 1 6.1169 -0.6321 -0.8816 29 1 6.1493 -0.6130 0.9037 30 1 8.4239 -0.8861 -0.6755 31 1 8.4484 -0.1919 0.9772 32 1 10.0532 1.4403 0.6536 33 1 13.1521 4.3077 -0.9399 34 1 7.4818 2.4624 1.0049 35 1 7.0441 3.0420 -0.6314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018772267.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:03 Heat of formation + Delta-G solvation = 7.115840 kcal Electronic energy + Delta-G solvation = -19288.594856 eV Core-core repulsion = 16220.041556 eV Total energy + Delta-G solvation = -3068.553300 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.69179 -39.87703 -38.60955 -36.12747 -34.31872 -33.51118 -31.46904 -29.66357 -29.18019 -26.97530 -25.13213 -23.75116 -22.00877 -21.47454 -20.52472 -19.77157 -19.33231 -17.88880 -17.59967 -16.85611 -16.57310 -15.98431 -15.61441 -15.24203 -14.96676 -14.77244 -14.38033 -14.07338 -13.97372 -13.93190 -13.75170 -13.50251 -13.45047 -13.01211 -12.60261 -12.47707 -12.20979 -12.10130 -11.87341 -11.80692 -11.58056 -11.16022 -11.01947 -10.46636 -9.94606 -9.65609 -9.39778 -8.05485 -5.42439 -0.47790 0.45521 0.65748 0.77364 1.37844 1.42389 1.49203 1.84528 2.06665 2.46789 3.22401 3.37673 3.44733 3.71634 3.81006 3.94357 4.17037 4.20045 4.29435 4.31103 4.43570 4.68308 4.70076 4.77952 4.85561 4.90093 4.93349 5.03606 5.13938 5.21177 5.26125 5.38365 5.72699 6.17794 6.36296 6.89055 7.02415 7.74485 7.95661 9.15614 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.042875 B = 0.003544 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.910572 B = 7898.558149 C = 8262.279106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.234 4.234 3 C -0.166 4.166 4 C 0.039 3.961 5 C 0.589 3.411 6 O -0.577 6.577 7 N -0.598 5.598 8 C 0.127 3.873 9 C -0.132 4.132 10 C 0.171 3.829 11 H 0.065 0.935 12 N -0.735 5.735 13 C -0.241 4.241 14 H 0.055 0.945 15 C -0.061 4.061 16 N -0.982 5.982 17 Si 0.957 3.043 18 H -0.281 1.281 19 H -0.243 1.243 20 H -0.295 1.295 21 C 0.090 3.910 22 N -0.541 5.541 23 S 0.534 5.466 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.163 0.837 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.371 0.629 33 H 0.259 0.741 34 H 0.062 0.938 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.722 -17.727 5.264 31.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.365 4.365 3 C -0.197 4.197 4 C -0.133 4.133 5 C 0.374 3.626 6 O -0.457 6.457 7 N -0.330 5.330 8 C 0.005 3.995 9 C -0.171 4.171 10 C 0.061 3.939 11 H 0.083 0.917 12 N -0.377 5.377 13 C -0.372 4.372 14 H 0.073 0.927 15 C -0.252 4.252 16 N -0.632 5.632 17 Si 0.784 3.216 18 H -0.207 1.207 19 H -0.167 1.167 20 H -0.221 1.221 21 C -0.036 4.036 22 N -0.378 5.378 23 S 0.689 5.311 24 H 0.116 0.884 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.181 0.819 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.206 0.794 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -25.082 -18.948 5.088 31.844 hybrid contribution 0.720 2.624 0.599 2.786 sum -24.362 -16.324 5.687 29.872 Atomic orbital electron populations 1.20418 0.83413 1.05200 1.04452 1.26520 1.04978 0.99254 1.05780 1.21225 0.89961 1.02765 1.05792 1.20660 0.94290 0.89142 1.09208 1.17494 0.81434 0.86932 0.76732 1.90765 1.83555 1.18087 1.53321 1.48375 1.04363 1.10054 1.70218 1.22102 0.93430 0.80545 1.03451 1.22998 0.94145 0.96994 1.02974 1.21395 0.82815 0.92381 0.97358 0.91718 1.42539 1.17545 1.51564 1.26086 1.19020 0.99097 1.15957 1.03101 0.92682 1.25559 0.97719 0.99474 1.02488 1.69896 1.15265 1.36509 1.41494 0.85384 0.77217 0.79636 0.79390 1.20739 1.16669 1.22131 1.23053 0.85191 0.94419 1.00910 1.72213 1.31325 1.10222 1.23995 1.80166 0.85633 1.10579 1.54720 0.88399 0.89161 0.89222 0.81921 0.89914 0.89743 0.87800 0.89690 0.79423 0.93178 0.91940 0.93329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.46 71.24 0.75 0.27 16 2 C -0.23 -3.30 6.58 24.94 0.16 -3.14 16 3 C -0.17 -3.66 9.92 21.82 0.22 -3.44 16 4 C 0.04 1.05 6.61 42.13 0.28 1.33 16 5 C 0.59 20.81 7.84 86.74 0.68 21.49 16 6 O -0.58 -24.43 16.91 -3.94 -0.07 -24.49 16 7 N -0.60 -20.26 3.33 -815.32 -2.71 -22.97 16 8 C 0.13 3.35 5.45 86.73 0.47 3.83 16 9 C -0.13 -3.64 6.60 31.78 0.21 -3.43 16 10 C 0.17 6.50 3.71 46.39 0.17 6.68 16 11 H 0.06 2.62 8.09 -2.38 -0.02 2.60 16 12 N -0.74 -33.77 5.05 -316.36 -1.60 -35.36 16 13 C -0.24 -13.77 10.44 84.03 0.88 -12.89 16 14 H 0.06 3.49 8.06 -2.91 -0.02 3.46 16 15 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 16 N -0.98 -63.40 13.97 21.65 0.30 -63.10 16 17 Si 0.96 44.92 27.74 68.60 1.90 46.82 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.24 -9.95 6.52 99.48 0.65 -9.30 16 20 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 21 C 0.09 3.51 6.60 86.86 0.57 4.08 16 22 N -0.54 -12.06 8.21 -75.33 -0.62 -12.67 16 23 S 0.53 7.03 23.20 -56.49 -1.31 5.72 16 24 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 25 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.16 3.69 7.99 -2.91 -0.02 3.67 16 28 H 0.08 2.04 7.51 -2.38 -0.02 2.02 16 29 H 0.08 2.01 7.62 -2.39 -0.02 1.99 16 30 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 31 H 0.08 2.20 8.00 -2.39 -0.02 2.18 16 32 H 0.37 15.98 5.62 -92.71 -0.52 15.46 16 33 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 34 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.05 2.15 8.04 -2.39 -0.02 2.13 16 Total: -1.00 -76.02 308.80 1.29 -74.73 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.53 Total: 19.67 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 4.86 Total: 11.67 kcal Atomic # 7 Polarization: -129.49 SS G_CDS: -4.62 Total: -134.11 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.07 Total: -24.49 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.90 Total: 46.82 kcal Atomic # 16 Polarization: 7.03 SS G_CDS: -1.31 Total: 5.72 kcal Total: -76.02 1.29 -74.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018772267.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.848 kcal (2) G-P(sol) polarization free energy of solvation -76.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds