Wall clock time and date at job start Tue Mar 31 2020 05:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.28649 * 124.72032 * 2 1 4 4 C 1.33562 * 115.76344 * 179.97438 * 3 2 1 5 5 C 1.47269 * 123.13628 * 179.97438 * 4 3 2 6 6 O 1.21637 * 119.99794 * 180.02562 * 5 4 3 7 7 N 1.34775 * 120.00113 * 0.02562 * 5 4 3 8 8 C 1.47420 * 125.65051 * 359.95558 * 7 5 4 9 9 C 1.54907 * 104.83524 * 204.16394 * 8 7 5 10 10 C 1.55155 * 101.58383 * 322.99460 * 9 8 7 11 11 H 1.08998 * 110.71769 * 277.13840 * 10 9 8 12 12 N 1.46495 * 110.72438 * 153.86514 * 10 9 8 13 13 C 1.36930 * 120.00334 * 160.02422 * 12 10 9 14 14 H 1.08006 * 120.00200 * 359.97438 * 13 12 10 15 15 C 1.38815 * 120.00466 * 179.97438 * 13 12 10 16 16 N 1.31624 * 119.99399 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00545 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47149 * 89.99465 * 17 15 13 19 19 H 1.48497 * 109.47281 * 210.00216 * 17 15 13 20 20 H 1.48504 * 109.46708 * 329.99652 * 17 15 13 21 21 C 1.47026 * 125.64519 * 180.02562 * 7 5 4 22 22 C 1.35207 * 113.72043 * 0.26227 * 4 3 2 23 23 S 1.70780 * 124.72023 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.47222 * 90.00612 * 1 2 3 25 25 H 1.09005 * 109.47358 * 210.00207 * 1 2 3 26 26 H 1.08999 * 109.47455 * 330.00617 * 1 2 3 27 27 H 1.08997 * 110.36858 * 323.00625 * 8 7 5 28 28 H 1.08999 * 110.36307 * 85.32839 * 8 7 5 29 29 H 1.09001 * 111.00336 * 81.06484 * 9 8 7 30 30 H 1.08994 * 111.00852 * 204.88001 * 9 8 7 31 31 H 0.97005 * 119.99930 * 340.01546 * 12 10 9 32 32 H 0.96998 * 119.99462 * 179.97438 * 16 15 13 33 33 H 1.08998 * 109.88351 * 298.31826 * 21 7 5 34 34 H 1.08998 * 109.88379 * 59.48616 * 21 7 5 35 35 H 1.07994 * 125.58338 * 179.73488 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2397 1.0574 0.0000 4 6 3.5590 0.8495 0.0005 5 6 4.5462 1.9423 0.0001 6 8 5.7356 1.6874 0.0001 7 7 4.1318 3.2248 -0.0004 8 6 2.7278 3.6741 -0.0015 9 6 2.7668 5.0961 -0.6147 10 6 4.0923 5.6513 -0.0296 11 1 3.9369 6.0389 0.9772 12 7 4.6519 6.6851 -0.9038 13 6 5.5626 7.5803 -0.4096 14 1 5.8680 7.5246 0.6249 15 6 6.0933 8.5595 -1.2381 16 7 5.7215 8.6271 -2.4989 17 14 7.3362 9.7804 -0.5641 18 1 8.7076 9.2388 -0.7403 19 1 7.2139 11.0665 -1.2963 20 1 7.0749 10.0063 0.8802 21 6 5.0053 4.4074 -0.0015 22 6 3.9036 -0.4579 -0.0047 23 16 2.4796 -1.4037 0.0006 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5137 27 1 2.1181 3.0123 -0.6167 28 1 2.3404 3.7106 1.0167 29 1 2.8087 5.0513 -1.7029 30 1 1.9142 5.6883 -0.2827 31 1 4.3775 6.7353 -1.8329 32 1 6.0920 9.3116 -3.0777 33 1 5.6171 4.4172 0.9006 34 1 5.6438 4.3959 -0.8848 35 1 4.9130 -0.8418 -0.0093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019283423.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:21 Heat of formation + Delta-G solvation = 7.374052 kcal Electronic energy + Delta-G solvation = -19378.501235 eV Core-core repulsion = 16309.959132 eV Total energy + Delta-G solvation = -3068.542103 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.71707 -40.05583 -38.67312 -35.96243 -33.50125 -33.12803 -31.13552 -29.46198 -29.27895 -26.72114 -25.25782 -23.92332 -21.94302 -21.44358 -20.57961 -19.54851 -19.10766 -17.62686 -17.20742 -16.99935 -16.55598 -16.04086 -15.56915 -15.37877 -15.20235 -14.87516 -14.38397 -14.29949 -13.84471 -13.52305 -13.36494 -13.18704 -13.00978 -12.94142 -12.87791 -12.57340 -12.42201 -12.14335 -11.77768 -11.66660 -11.36765 -11.02650 -10.66424 -10.59919 -9.96948 -9.61874 -9.12627 -7.98539 -5.29265 -0.51931 0.26548 0.57959 0.88482 1.46481 1.48677 1.56663 1.94505 2.21074 2.54110 2.93766 3.32683 3.64694 3.69159 3.90399 3.97535 4.11776 4.26825 4.32640 4.35647 4.51268 4.55952 4.74448 4.79005 4.83693 4.96166 5.02217 5.14291 5.23210 5.29335 5.37136 5.50081 6.22772 6.35353 6.48861 6.96554 7.29662 8.00475 8.25104 9.24497 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.038541 B = 0.003529 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.325081 B = 7931.858064 C = 8409.535092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.016 3.984 3 N -0.464 5.464 4 C -0.007 4.007 5 C 0.588 3.412 6 O -0.587 6.587 7 N -0.597 5.597 8 C 0.118 3.882 9 C -0.130 4.130 10 C 0.167 3.833 11 H 0.073 0.927 12 N -0.725 5.725 13 C -0.249 4.249 14 H 0.078 0.922 15 C -0.071 4.071 16 N -0.967 5.967 17 Si 0.973 3.027 18 H -0.291 1.291 19 H -0.293 1.293 20 H -0.266 1.266 21 C 0.093 3.907 22 C -0.245 4.245 23 S 0.296 5.704 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.376 0.624 32 H 0.252 0.748 33 H 0.049 0.951 34 H 0.038 0.962 35 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.712 -22.724 6.443 28.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.263 4.263 3 N -0.181 5.181 4 C -0.141 4.141 5 C 0.376 3.624 6 O -0.469 6.469 7 N -0.328 5.328 8 C -0.004 4.004 9 C -0.169 4.169 10 C 0.057 3.943 11 H 0.091 0.909 12 N -0.364 5.364 13 C -0.381 4.381 14 H 0.096 0.904 15 C -0.263 4.263 16 N -0.617 5.617 17 Si 0.802 3.198 18 H -0.218 1.218 19 H -0.219 1.219 20 H -0.191 1.191 21 C -0.033 4.033 22 C -0.388 4.388 23 S 0.554 5.446 24 H 0.120 0.880 25 H 0.127 0.873 26 H 0.111 0.889 27 H 0.127 0.873 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.125 0.875 31 H 0.209 0.791 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -15.453 -23.320 6.575 28.737 hybrid contribution 2.116 1.768 -0.341 2.778 sum -13.337 -21.552 6.234 26.100 Atomic orbital electron populations 1.20681 0.81820 1.05849 1.05441 1.27962 1.04119 0.91706 1.02503 1.67074 1.02189 1.32228 1.16594 1.20010 0.90375 0.92837 1.10915 1.17393 0.86866 0.81616 0.76575 1.90763 1.18105 1.83990 1.53994 1.48420 1.10194 1.04216 1.69952 1.22620 0.80807 0.94593 1.02387 1.23054 0.97772 0.95508 1.00548 1.21398 0.91495 0.86183 0.95232 0.90869 1.42520 1.50285 1.33023 1.10527 1.19657 1.16073 1.06790 0.95548 0.90419 1.25579 1.02828 1.01785 0.96142 1.69816 1.48540 1.37369 1.05978 0.85149 0.78627 0.78094 0.77941 1.21833 1.21909 1.19094 1.22899 0.94609 0.85967 0.99842 1.26821 1.08201 0.96988 1.06767 1.82427 0.90988 1.08766 1.62438 0.88002 0.87282 0.88912 0.87283 0.90010 0.91696 0.87536 0.79103 0.93877 0.93239 0.94364 0.79602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.46 71.23 0.74 0.22 16 2 C 0.02 0.24 7.34 88.57 0.65 0.90 16 3 N -0.46 -10.95 7.33 -180.83 -1.33 -12.27 16 4 C -0.01 -0.19 6.61 40.56 0.27 0.08 16 5 C 0.59 22.24 7.83 86.62 0.68 22.91 16 6 O -0.59 -26.26 17.04 -4.15 -0.07 -26.33 16 7 N -0.60 -21.89 3.33 -815.83 -2.71 -24.61 16 8 C 0.12 3.40 6.04 86.86 0.52 3.92 16 9 C -0.13 -4.12 6.69 31.98 0.21 -3.91 16 10 C 0.17 6.77 3.59 46.18 0.17 6.94 16 11 H 0.07 2.86 8.12 -2.39 -0.02 2.84 16 12 N -0.72 -37.05 5.17 -317.33 -1.64 -38.70 16 13 C -0.25 -13.99 9.98 84.04 0.84 -13.15 16 14 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 15 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 16 N -0.97 -59.68 13.06 21.65 0.28 -59.39 16 17 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 18 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 19 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 C 0.09 3.92 6.62 86.73 0.57 4.49 16 22 C -0.24 -5.50 10.62 67.12 0.71 -4.79 16 23 S 0.30 3.67 22.92 -56.49 -1.29 2.38 16 24 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.11 0.15 8.14 -2.38 -0.02 0.13 16 26 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.11 2.93 6.02 -2.39 -0.01 2.91 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.06 2.20 8.00 -2.39 -0.02 2.18 16 30 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.38 20.58 7.71 -92.70 -0.72 19.86 16 32 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 33 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.04 1.87 8.03 -2.39 -0.02 1.85 16 35 H 0.19 4.08 8.03 -2.91 -0.02 4.06 16 Total: -1.00 -75.12 311.91 1.50 -73.62 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.40 Total: 22.53 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 5.84 Total: 13.98 kcal Atomic # 7 Polarization: -129.57 SS G_CDS: -5.40 Total: -134.97 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.07 Total: -26.33 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -1.29 Total: 2.38 kcal Total: -75.12 1.50 -73.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019283423.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.990 kcal (2) G-P(sol) polarization free energy of solvation -75.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds