Wall clock time and date at job start Tue Mar 31 2020 05:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30945 * 122.90683 * 2 1 4 4 C 1.29430 * 117.36089 * 180.34696 * 3 2 1 5 5 S 1.70954 * 110.39325 * 359.71103 * 4 3 2 6 6 C 1.35668 * 122.90407 * 179.80978 * 2 1 3 7 7 C 1.46686 * 126.12612 * 359.96011 * 6 2 1 8 8 O 1.21688 * 120.00296 * 359.71932 * 7 6 2 9 9 N 1.34781 * 119.99459 * 179.71459 * 7 6 2 10 10 C 1.46503 * 119.99611 * 180.02562 * 9 7 6 11 11 H 1.09006 * 112.91033 * 336.25051 * 10 9 7 12 12 C 1.53779 * 113.61483 * 107.50299 * 10 9 7 13 13 C 1.53784 * 87.08045 * 139.98067 * 12 10 9 14 14 H 1.09004 * 113.61451 * 220.02152 * 13 12 10 15 15 N 1.46496 * 113.61524 * 89.11591 * 13 12 10 16 16 C 1.36938 * 119.99833 * 107.50104 * 15 13 12 17 17 H 1.08001 * 120.00007 * 0.02562 * 16 15 13 18 18 C 1.38814 * 120.00036 * 179.97438 * 16 15 13 19 19 N 1.31610 * 120.00156 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99978 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47254 * 89.99476 * 20 18 16 22 22 H 1.48495 * 109.47439 * 209.99542 * 20 18 16 23 23 H 1.48501 * 109.47076 * 330.00018 * 20 18 16 24 24 C 1.53779 * 113.61085 * 205.00218 * 10 9 7 25 25 H 1.09005 * 109.47135 * 270.19514 * 1 2 3 26 26 H 1.08997 * 109.47328 * 30.18985 * 1 2 3 27 27 H 1.09001 * 109.47362 * 150.19143 * 1 2 3 28 28 H 1.07998 * 124.79944 * 179.72760 * 4 3 2 29 29 H 0.96998 * 120.00342 * 0.02562 * 9 7 6 30 30 H 1.09002 * 113.61557 * 25.43179 * 12 10 9 31 31 H 1.09004 * 113.61501 * 254.52599 * 12 10 9 32 32 H 0.96998 * 120.00377 * 287.50245 * 15 13 12 33 33 H 0.97002 * 120.00403 * 180.02562 * 19 18 16 34 34 H 1.08997 * 113.61646 * 105.47219 * 24 10 9 35 35 H 1.08998 * 113.69354 * 334.57527 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2184 1.0994 0.0000 4 6 3.5066 0.9743 -0.0070 5 16 3.9447 -0.6782 -0.0065 6 6 2.2440 -1.1390 0.0038 7 6 1.7190 -2.5087 0.0092 8 8 0.5172 -2.6998 0.0157 9 7 2.5678 -3.5557 0.0067 10 6 2.0436 -4.9237 0.0115 11 1 1.0355 -4.9904 0.4209 12 6 2.2123 -5.6527 -1.3319 13 6 2.5689 -6.9071 -0.5168 14 1 3.3830 -7.4904 -0.9468 15 7 1.4071 -7.7254 -0.1606 16 6 1.1988 -8.9267 -0.7841 17 1 1.8912 -9.2710 -1.5381 18 6 0.0983 -9.7024 -0.4463 19 7 -0.1022 -10.8567 -1.0459 20 14 -1.0989 -9.1072 0.8582 21 1 -2.1724 -8.3064 0.2166 22 1 -1.6994 -10.2763 1.5494 23 1 -0.3767 -8.2655 1.8458 24 6 3.0185 -5.9548 0.6040 25 1 -0.3634 0.0035 1.0277 26 1 -0.3634 0.8882 -0.5168 27 1 -0.3634 -0.8917 -0.5109 28 1 4.2057 1.7974 -0.0120 29 1 3.5258 -3.4034 0.0018 30 1 3.0383 -5.2737 -1.9337 31 1 1.2847 -5.7480 -1.8965 32 1 0.7854 -7.4164 0.5167 33 1 -0.8714 -11.3986 -0.8102 34 1 2.7419 -6.2940 1.6022 35 1 4.0653 -5.6595 0.5322 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020002391.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:31 Heat of formation + Delta-G solvation = 47.113327 kcal Electronic energy + Delta-G solvation = -19130.658159 eV Core-core repulsion = 16063.839281 eV Total energy + Delta-G solvation = -3066.818878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.62133 -39.60981 -38.04854 -34.27276 -32.78999 -32.09772 -30.43033 -28.55163 -25.40075 -25.28745 -24.60162 -22.81795 -21.56019 -19.91796 -18.79652 -18.72740 -17.64574 -16.92441 -16.28607 -15.65924 -15.31213 -14.85652 -14.45799 -14.23491 -13.99543 -13.88313 -13.13444 -12.78475 -12.74332 -12.65324 -12.29692 -12.16674 -12.11238 -11.64674 -10.98226 -10.87670 -10.43193 -10.38123 -10.31947 -9.97260 -9.89769 -9.80456 -9.61724 -9.21798 -8.99163 -8.87216 -7.34310 -5.81547 -3.18634 -0.07493 0.84120 1.20989 2.16668 3.00287 3.04508 3.37114 3.41025 3.45599 3.81142 4.56074 4.59065 4.68563 4.79451 4.90712 5.01194 5.14992 5.36542 5.47222 5.52826 5.61907 5.65317 5.72212 5.93036 5.98096 6.12174 6.20604 6.42200 6.51071 6.60642 6.81699 7.21775 7.40558 7.94603 8.05711 8.37535 9.14677 9.87080 10.05105 11.36236 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.032253 B = 0.003686 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.916461 B = 7594.874569 C = 8186.977854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.143 3.857 3 N -0.475 5.475 4 C 0.035 3.965 5 S 0.157 5.843 6 C -0.291 4.291 7 C 0.593 3.407 8 O -0.519 6.519 9 N -0.710 5.710 10 C 0.122 3.878 11 H 0.114 0.886 12 C -0.182 4.182 13 C 0.178 3.822 14 H 0.078 0.922 15 N -0.729 5.729 16 C -0.250 4.250 17 H 0.093 0.907 18 C 0.009 3.991 19 N -0.931 5.931 20 Si 0.882 3.118 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.277 1.277 24 C -0.165 4.165 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.102 0.898 28 H 0.206 0.794 29 H 0.395 0.605 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.363 0.637 33 H 0.261 0.739 34 H 0.073 0.927 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.748 23.806 3.155 26.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.005 3.995 3 N -0.189 5.189 4 C -0.260 4.260 5 S 0.412 5.588 6 C -0.415 4.415 7 C 0.377 3.623 8 O -0.397 6.397 9 N -0.360 5.360 10 C 0.018 3.982 11 H 0.132 0.868 12 C -0.224 4.224 13 C 0.065 3.935 14 H 0.096 0.904 15 N -0.369 5.369 16 C -0.380 4.380 17 H 0.111 0.889 18 C -0.188 4.188 19 N -0.577 5.577 20 Si 0.712 3.288 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.203 1.203 24 C -0.205 4.205 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.121 0.879 28 H 0.222 0.778 29 H 0.229 0.771 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.196 0.804 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.668 23.417 3.022 25.910 hybrid contribution -1.128 0.685 0.912 1.604 sum 9.541 24.102 3.935 26.219 Atomic orbital electron populations 1.20691 0.85787 1.04680 1.03840 1.20785 0.98889 0.84912 0.94886 1.66137 1.04898 1.31332 1.16500 1.28714 0.95312 1.00327 1.01674 1.83900 1.05661 1.03567 1.65690 1.25626 0.96075 0.99414 1.20379 1.16725 0.86412 0.82379 0.76745 1.90815 1.14211 1.84787 1.49879 1.46026 1.09024 1.06394 1.74521 1.22768 0.99233 0.77205 0.98959 0.86828 1.24304 1.02409 0.99201 0.96507 1.20848 0.90787 0.89345 0.92511 0.90351 1.42540 1.26610 1.21238 1.46534 1.19088 1.08356 0.93535 1.17019 0.88930 1.24670 0.98314 0.96437 0.99354 1.69692 1.30532 1.12682 1.44839 0.86589 0.82017 0.77886 0.82300 1.20812 1.21583 1.20274 1.23932 0.98661 0.96989 1.00954 0.90011 0.90725 0.87945 0.77754 0.77111 0.90740 0.90629 0.80354 0.92919 0.90779 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 9.69 36.00 0.35 -0.68 16 2 C 0.14 1.71 6.79 -83.89 -0.57 1.14 16 3 N -0.47 -5.14 10.50 -11.53 -0.12 -5.26 16 4 C 0.04 0.27 12.22 51.75 0.63 0.90 16 5 S 0.16 1.19 22.35 -107.50 -2.40 -1.21 16 6 C -0.29 -3.41 6.48 -37.09 -0.24 -3.65 16 7 C 0.59 8.39 7.78 -12.85 -0.10 8.29 16 8 O -0.52 -9.06 13.87 5.20 0.07 -8.99 16 9 N -0.71 -8.93 5.35 -54.32 -0.29 -9.22 16 10 C 0.12 1.84 4.12 -67.12 -0.28 1.57 16 11 H 0.11 2.01 7.47 -51.93 -0.39 1.62 16 12 C -0.18 -2.96 7.68 -25.92 -0.20 -3.16 16 13 C 0.18 3.22 4.56 -67.12 -0.31 2.92 16 14 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 15 N -0.73 -16.88 5.11 -52.63 -0.27 -17.15 16 16 C -0.25 -6.96 10.45 -15.06 -0.16 -7.11 16 17 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 18 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 19 N -0.93 -29.03 13.97 55.49 0.78 -28.25 16 20 Si 0.88 22.16 27.74 -169.99 -4.71 17.44 16 21 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 24 C -0.17 -2.36 7.58 -25.92 -0.20 -2.56 16 25 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.10 1.33 6.02 -51.93 -0.31 1.02 16 28 H 0.21 0.70 8.06 -52.49 -0.42 0.28 16 29 H 0.39 3.83 7.91 -40.82 -0.32 3.51 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.36 8.38 5.76 -40.82 -0.24 8.14 16 33 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 LS Contribution 310.98 15.07 4.69 4.69 Total: -1.00 -33.46 310.98 -7.65 -41.12 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -4.23 Total: 9.04 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.16 Total: -2.20 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: 0.09 Total: -59.88 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.07 Total: -8.99 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.44 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.40 Total: -1.21 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.46 -7.65 -41.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020002391.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.229 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds