Wall clock time and date at job start Tue Mar 31 2020 05:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29435 * 124.80011 * 2 1 4 4 C 1.30947 * 117.35957 * 179.97438 * 3 2 1 5 5 C 1.35657 * 114.19132 * 0.02562 * 4 3 2 6 6 C 1.46694 * 126.12691 * 180.02562 * 5 4 3 7 7 O 1.21682 * 119.99842 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99634 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99653 * 180.02562 * 8 6 5 10 10 H 1.09002 * 112.84935 * 334.66222 * 9 8 6 11 11 C 1.53786 * 113.61643 * 105.85894 * 9 8 6 12 12 C 1.53962 * 87.01719 * 89.22773 * 11 9 8 13 13 H 1.08997 * 113.53543 * 270.80998 * 12 11 9 14 14 N 1.46499 * 113.74103 * 139.94430 * 12 11 9 15 15 C 1.36937 * 119.99743 * 107.40343 * 14 12 11 16 16 H 1.07999 * 120.00085 * 359.97438 * 15 14 12 17 17 C 1.38813 * 119.99954 * 180.02562 * 15 14 12 18 18 N 1.31625 * 119.99976 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00081 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47317 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47029 * 119.99707 * 19 17 15 22 22 H 1.48499 * 109.47281 * 239.99651 * 19 17 15 23 23 C 1.53781 * 113.61305 * 203.46742 * 9 8 6 24 24 S 1.70953 * 124.80833 * 180.26660 * 2 1 3 25 25 H 1.09004 * 109.46870 * 90.03040 * 1 2 3 26 26 H 1.08993 * 109.47069 * 210.02885 * 1 2 3 27 27 H 1.08996 * 109.47689 * 330.03414 * 1 2 3 28 28 H 1.07999 * 122.90288 * 179.97438 * 4 3 2 29 29 H 0.96995 * 120.00200 * 359.97438 * 8 6 5 30 30 H 1.08993 * 113.61491 * 203.74894 * 11 9 8 31 31 H 1.09000 * 113.61138 * 334.65232 * 11 9 8 32 32 H 0.96994 * 119.99973 * 287.40338 * 14 12 11 33 33 H 0.96998 * 119.99861 * 180.02562 * 18 17 15 34 34 H 1.09001 * 113.61695 * 25.34675 * 23 9 8 35 35 H 1.08997 * 113.61223 * 156.25258 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0629 0.0000 4 6 3.5441 0.8933 0.0005 5 6 3.9351 -0.4057 0.0004 6 6 5.3190 -0.8924 0.0015 7 8 6.2425 -0.1001 0.0020 8 7 5.5674 -2.2171 0.0007 9 6 6.9493 -2.7032 0.0023 10 1 7.6505 -1.9868 -0.4259 11 6 7.4008 -3.2719 1.3579 12 6 6.8686 -4.6329 0.8733 13 1 5.8181 -4.7993 1.1117 14 7 7.7219 -5.7652 1.2421 15 6 7.3200 -6.6353 2.2201 16 1 6.3742 -6.4867 2.7197 17 6 8.1288 -7.7079 2.5699 18 7 9.2818 -7.8888 1.9612 19 14 7.5809 -8.8946 3.9044 20 1 6.2570 -8.4731 4.4286 21 1 7.4765 -10.2631 3.3375 22 1 8.5740 -8.8906 5.0085 23 6 7.1024 -4.1263 -0.5597 24 16 2.4828 -1.4036 -0.0065 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3634 0.8902 0.5133 28 1 4.2433 1.7164 0.0002 29 1 4.8311 -2.8486 -0.0001 30 1 8.4810 -3.2517 1.5020 31 1 6.8518 -2.8646 2.2069 32 1 8.5715 -5.8984 0.7936 33 1 9.8467 -8.6385 2.2055 34 1 6.3130 -4.4079 -1.2566 35 1 8.1010 -4.3402 -0.9409 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020018437.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:15 Heat of formation + Delta-G solvation = 39.857353 kcal Electronic energy + Delta-G solvation = -18776.823032 eV Core-core repulsion = 15709.689511 eV Total energy + Delta-G solvation = -3067.133521 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.43720 -39.60514 -37.89168 -34.12835 -32.92346 -32.37669 -30.03661 -28.89402 -25.19235 -25.08367 -24.34317 -22.75334 -21.75242 -19.84954 -19.06582 -18.63441 -17.24730 -16.85113 -16.08934 -15.59473 -15.10690 -14.97224 -14.61297 -14.35521 -13.92144 -13.78057 -13.58019 -12.97886 -12.81243 -12.72015 -12.18037 -11.91223 -11.90436 -11.66185 -10.94881 -10.82678 -10.38970 -10.36427 -10.21438 -9.98611 -9.92666 -9.82020 -9.61892 -9.23354 -8.97080 -8.86558 -7.02117 -5.83327 -3.12597 -0.05088 0.83920 1.25477 2.20012 3.00250 3.05431 3.39391 3.45100 3.47398 3.73752 4.54635 4.58108 4.65132 4.94487 4.96809 4.99534 5.06424 5.14922 5.39082 5.41482 5.45064 5.79136 5.81743 5.84547 6.05863 6.20095 6.26863 6.39857 6.57098 6.62915 7.00891 7.25795 7.41885 7.64704 8.05399 8.34923 9.46407 10.03122 10.37659 11.38997 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025295 B = 0.003423 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.674724 B = 8179.072136 C = 8966.856670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.056 3.944 3 N -0.481 5.481 4 C 0.119 3.881 5 C -0.290 4.290 6 C 0.597 3.403 7 O -0.527 6.527 8 N -0.699 5.699 9 C 0.115 3.885 10 H 0.099 0.901 11 C -0.176 4.176 12 C 0.166 3.834 13 H 0.073 0.927 14 N -0.711 5.711 15 C -0.246 4.246 16 H 0.072 0.928 17 C -0.012 4.012 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.158 4.158 24 S 0.169 5.831 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.189 0.811 29 H 0.398 0.602 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.386 0.614 33 H 0.256 0.744 34 H 0.065 0.935 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.777 14.340 -6.374 22.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.219 4.219 3 N -0.196 5.196 4 C -0.038 4.038 5 C -0.414 4.414 6 C 0.381 3.619 7 O -0.405 6.405 8 N -0.349 5.349 9 C 0.010 3.990 10 H 0.117 0.883 11 C -0.218 4.218 12 C 0.054 3.946 13 H 0.091 0.909 14 N -0.349 5.349 15 C -0.377 4.377 16 H 0.090 0.910 17 C -0.208 4.208 18 N -0.579 5.579 19 Si 0.738 3.262 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.198 4.198 24 S 0.425 5.575 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.206 0.794 29 H 0.232 0.768 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.220 0.780 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.690 14.147 -6.235 22.750 hybrid contribution 0.362 -0.290 0.650 0.799 sum -16.328 13.857 -5.585 22.132 Atomic orbital electron populations 1.20541 0.84653 1.04721 1.04308 1.27511 1.02289 0.91139 1.00940 1.66246 1.04818 1.31197 1.17291 1.22187 0.90702 0.95567 0.95382 1.25831 0.98054 0.97869 1.19657 1.16680 0.85831 0.82739 0.76634 1.90837 1.44221 1.55170 1.50283 1.45620 1.09274 1.05833 1.74189 1.21897 0.81706 0.95811 0.99571 0.88288 1.24355 1.02055 1.00043 0.95382 1.21655 0.94944 0.86817 0.91205 0.90896 1.42398 1.21438 1.27315 1.43768 1.19336 1.02729 1.03915 1.11714 0.91042 1.24776 0.96814 0.99121 1.00110 1.69670 1.11803 1.31927 1.44492 0.86116 0.77696 0.80993 0.81361 1.20515 1.21798 1.21797 1.23868 1.02793 0.93561 0.99609 1.84011 0.96531 1.11260 1.65676 0.89079 0.89630 0.88858 0.79443 0.76753 0.89325 0.92319 0.77962 0.93436 0.91671 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.46 36.00 0.38 -0.03 16 2 C 0.06 0.49 7.39 -13.29 -0.10 0.39 16 3 N -0.48 -5.34 10.51 -11.50 -0.12 -5.46 16 4 C 0.12 1.38 11.09 -18.85 -0.21 1.17 16 5 C -0.29 -3.46 6.48 -37.09 -0.24 -3.70 16 6 C 0.60 8.56 7.79 -12.84 -0.10 8.46 16 7 O -0.53 -9.21 16.48 5.21 0.09 -9.13 16 8 N -0.70 -9.36 5.26 -54.32 -0.29 -9.65 16 9 C 0.12 1.73 4.30 -67.12 -0.29 1.44 16 10 H 0.10 1.54 7.50 -51.93 -0.39 1.15 16 11 C -0.18 -3.08 7.70 -25.82 -0.20 -3.27 16 12 C 0.17 3.14 4.37 -67.02 -0.29 2.85 16 13 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 14 N -0.71 -17.34 5.41 -52.55 -0.28 -17.62 16 15 C -0.25 -6.68 9.97 -15.06 -0.15 -6.83 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 19 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 C -0.16 -2.45 7.57 -25.92 -0.20 -2.65 16 24 S 0.17 1.50 22.31 -107.50 -2.40 -0.90 16 25 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.19 2.01 8.06 -52.49 -0.42 1.59 16 29 H 0.40 4.58 7.89 -40.82 -0.32 4.25 16 30 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.39 9.98 7.92 -40.82 -0.32 9.66 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.09 1.49 8.12 -51.93 -0.42 1.07 16 LS Contribution 319.09 15.07 4.81 4.81 Total: -1.00 -32.50 319.09 -8.37 -40.87 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -4.38 Total: 9.67 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -1.49 Total: -2.60 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 0.03 Total: -59.70 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.40 Total: -0.90 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.50 -8.37 -40.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020018437.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.729 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds