Wall clock time and date at job start Tue Mar 31 2020 05:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29517 * 121.53174 * 2 1 4 4 S 1.69481 * 107.84507 * 179.97438 * 3 2 1 5 5 C 1.72014 * 96.02642 * 359.79768 * 4 3 2 6 6 C 1.37895 * 105.36579 * 0.33238 * 5 4 3 7 7 C 1.47341 * 123.08604 * 179.88350 * 6 5 4 8 8 O 1.21616 * 119.99981 * 179.70454 * 7 6 5 9 9 N 1.34781 * 119.99828 * 359.71315 * 7 6 5 10 10 C 1.46504 * 119.99595 * 180.02562 * 9 7 6 11 11 H 1.09004 * 112.84633 * 336.18950 * 10 9 7 12 12 C 1.53774 * 113.69170 * 107.46232 * 10 9 7 13 13 C 1.53782 * 87.08161 * 139.98977 * 12 10 9 14 14 H 1.09002 * 113.68975 * 220.00709 * 13 12 10 15 15 N 1.46498 * 113.61718 * 89.11276 * 13 12 10 16 16 C 1.36943 * 119.99752 * 107.22616 * 15 13 12 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 13 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 13 19 19 N 1.31611 * 120.00081 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99814 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47483 * 90.00178 * 20 18 16 22 22 H 1.48498 * 109.47011 * 210.00042 * 20 18 16 23 23 H 1.48502 * 109.47495 * 329.99664 * 20 18 16 24 24 C 1.53781 * 87.08215 * 334.56639 * 13 12 10 25 25 H 1.08996 * 109.46986 * 270.01996 * 1 2 3 26 26 H 1.08992 * 109.47135 * 30.02804 * 1 2 3 27 27 H 1.09001 * 109.46613 * 150.02668 * 1 2 3 28 28 H 1.08005 * 127.31282 * 180.23727 * 5 4 3 29 29 H 0.96996 * 120.00132 * 359.97438 * 9 7 6 30 30 H 1.08999 * 113.61704 * 25.43765 * 12 10 9 31 31 H 1.09006 * 113.61200 * 254.53450 * 12 10 9 32 32 H 0.97001 * 120.00384 * 287.50972 * 15 13 12 33 33 H 0.97008 * 120.00329 * 179.97438 * 19 18 16 34 34 H 1.08995 * 113.61890 * 139.98284 * 24 13 12 35 35 H 1.09004 * 113.61421 * 270.80580 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8310 0.7029 0.0007 5 6 3.6017 -1.0019 0.0071 6 6 2.2352 -1.1868 0.0007 7 6 1.6037 -2.5180 0.0007 8 8 0.3915 -2.6159 0.0003 9 7 2.3695 -3.6271 0.0014 10 6 1.7415 -4.9507 0.0009 11 1 0.7294 -4.9392 0.4055 12 6 1.8596 -5.6901 -1.3422 13 6 2.1140 -6.9686 -0.5264 14 1 2.8822 -7.6142 -0.9522 15 7 0.8907 -7.6946 -0.1763 16 6 0.5900 -8.8731 -0.8057 17 1 1.2570 -9.2695 -1.5570 18 6 -0.5720 -9.5581 -0.4781 19 7 -0.8607 -10.6910 -1.0826 20 14 -1.7259 -8.8720 0.8208 21 1 -2.7267 -7.9849 0.1752 22 1 -2.4239 -9.9909 1.5036 23 1 -0.9448 -8.0949 1.8163 24 6 2.6308 -6.0547 0.5972 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3632 -0.8903 -0.5134 28 1 4.3658 -1.7652 0.0131 29 1 3.3363 -3.5490 0.0015 30 1 2.7152 -5.3760 -1.9399 31 1 0.9301 -5.7130 -1.9112 32 1 0.2916 -7.3386 0.4984 33 1 -1.6726 -11.1699 -0.8535 34 1 2.3240 -6.3717 1.5939 35 1 3.6976 -5.8413 0.5305 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020090536.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:13 Heat of formation + Delta-G solvation = 42.615754 kcal Electronic energy + Delta-G solvation = -19180.311070 eV Core-core repulsion = 16113.297162 eV Total energy + Delta-G solvation = -3067.013908 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.59786 -39.04732 -37.67803 -34.38680 -33.03345 -31.61136 -30.25501 -29.74129 -25.39512 -25.29442 -24.11429 -22.67708 -21.26402 -19.85491 -19.26445 -18.24809 -17.69891 -17.14355 -16.06648 -15.56089 -14.99716 -14.83610 -14.42063 -14.20321 -14.06333 -13.57667 -13.10375 -12.79233 -12.61361 -12.59212 -12.29030 -12.16704 -12.08860 -11.64685 -11.03265 -10.98561 -10.87231 -10.42889 -10.38387 -10.11117 -9.94389 -9.75740 -9.61781 -9.11152 -8.98105 -8.83324 -7.34965 -5.82215 -3.19365 0.06703 0.99784 1.40108 1.58143 3.08227 3.10026 3.36534 3.40379 3.45101 4.10341 4.55437 4.58238 4.65511 4.86026 4.93680 5.00565 5.13905 5.15831 5.35997 5.43597 5.53429 5.62647 5.71433 5.91529 5.95310 6.05927 6.17087 6.37404 6.43698 6.51566 6.60788 6.81762 7.42617 7.93914 8.11527 8.36839 9.14028 9.86410 10.04338 11.35553 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033443 B = 0.003534 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.050099 B = 7920.588667 C = 8485.077662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.167 3.833 3 N -0.470 5.470 4 S 0.284 5.716 5 C -0.175 4.175 6 C -0.207 4.207 7 C 0.580 3.420 8 O -0.526 6.526 9 N -0.708 5.708 10 C 0.122 3.878 11 H 0.113 0.887 12 C -0.182 4.182 13 C 0.177 3.823 14 H 0.078 0.922 15 N -0.729 5.729 16 C -0.251 4.251 17 H 0.093 0.907 18 C 0.008 3.992 19 N -0.930 5.930 20 Si 0.882 3.118 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.277 1.277 24 C -0.165 4.165 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.113 0.887 28 H 0.191 0.809 29 H 0.395 0.605 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.363 0.637 33 H 0.261 0.739 34 H 0.073 0.927 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.915 21.947 3.288 25.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.011 4.011 3 N -0.291 5.291 4 S 0.439 5.561 5 C -0.325 4.325 6 C -0.228 4.228 7 C 0.364 3.636 8 O -0.404 6.404 9 N -0.358 5.358 10 C 0.019 3.981 11 H 0.131 0.869 12 C -0.224 4.224 13 C 0.065 3.935 14 H 0.096 0.904 15 N -0.369 5.369 16 C -0.380 4.380 17 H 0.111 0.889 18 C -0.188 4.188 19 N -0.577 5.577 20 Si 0.712 3.288 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.203 1.203 24 C -0.205 4.205 25 H 0.103 0.897 26 H 0.092 0.908 27 H 0.131 0.869 28 H 0.208 0.792 29 H 0.230 0.770 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.196 0.804 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.905 23.691 3.149 26.701 hybrid contribution -1.047 -1.153 0.911 1.804 sum 10.858 22.538 4.060 25.345 Atomic orbital electron populations 1.20958 0.85223 1.05321 1.04392 1.21509 0.99710 0.86643 0.93210 1.76511 1.00127 1.26187 1.26281 1.84056 1.11022 0.95629 1.65351 1.27420 0.99333 1.04768 1.00962 1.20524 0.92165 0.96427 1.13721 1.17345 0.86703 0.82960 0.76556 1.90750 1.13317 1.86442 1.49878 1.45958 1.09541 1.05943 1.74327 1.22742 0.98299 0.78288 0.98797 0.86894 1.24297 1.02332 0.99233 0.96555 1.20852 0.89826 0.90329 0.92537 0.90426 1.42543 1.22704 1.25051 1.46643 1.19085 1.05522 0.96306 1.17113 0.88949 1.24672 0.97976 0.96776 0.99355 1.69694 1.26795 1.16429 1.44821 0.86588 0.81678 0.78264 0.82246 1.20800 1.21592 1.20269 1.23925 0.99097 0.96609 1.00892 0.89713 0.90810 0.86855 0.79179 0.77035 0.90786 0.90670 0.80353 0.92916 0.90842 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 9.52 36.01 0.34 -0.73 16 2 C 0.17 1.94 6.75 -83.20 -0.56 1.38 16 3 N -0.47 -5.38 11.97 32.50 0.39 -4.99 16 4 S 0.28 2.30 23.69 -107.50 -2.55 -0.25 16 5 C -0.18 -1.33 10.79 30.61 0.33 -1.00 16 6 C -0.21 -2.24 5.86 -105.95 -0.62 -2.86 16 7 C 0.58 7.60 7.78 -12.56 -0.10 7.50 16 8 O -0.53 -8.68 13.35 5.26 0.07 -8.61 16 9 N -0.71 -8.05 5.33 -54.11 -0.29 -8.33 16 10 C 0.12 1.76 4.11 -67.12 -0.28 1.48 16 11 H 0.11 1.94 7.46 -51.93 -0.39 1.55 16 12 C -0.18 -2.86 7.68 -25.92 -0.20 -3.06 16 13 C 0.18 3.14 4.56 -67.12 -0.31 2.84 16 14 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 15 N -0.73 -16.67 5.11 -52.64 -0.27 -16.94 16 16 C -0.25 -6.91 10.45 -15.06 -0.16 -7.07 16 17 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 18 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 19 N -0.93 -28.89 13.97 55.49 0.78 -28.12 16 20 Si 0.88 22.00 27.74 -169.99 -4.71 17.28 16 21 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 23 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 24 C -0.17 -2.26 7.58 -25.92 -0.20 -2.46 16 25 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.11 1.43 5.63 -51.93 -0.29 1.13 16 28 H 0.19 0.74 7.20 -52.48 -0.38 0.37 16 29 H 0.40 3.10 7.31 -40.82 -0.30 2.81 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.36 8.27 5.76 -40.82 -0.24 8.04 16 33 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 LS Contribution 309.12 15.07 4.66 4.66 Total: -1.00 -33.02 309.12 -7.90 -40.92 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -4.14 Total: 8.20 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -1.84 Total: -3.82 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.61 Total: -58.39 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.07 Total: -8.61 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.28 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.55 Total: -0.25 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.02 -7.90 -40.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020090536.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.535 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds