Wall clock time and date at job start Tue Mar 31 2020 05:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35006 * 127.27112 * 2 1 4 4 C 1.39491 * 111.68061 * 180.02562 * 3 2 1 5 5 C 1.47686 * 122.10221 * 180.02562 * 4 3 2 6 6 O 1.21575 * 120.00197 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00253 * 179.97438 * 5 4 3 8 8 C 1.46501 * 120.00122 * 179.97438 * 7 5 4 9 9 H 1.08993 * 112.90929 * 336.25213 * 8 7 5 10 10 C 1.53962 * 113.66387 * 107.55425 * 8 7 5 11 11 C 1.53782 * 87.11063 * 139.88885 * 10 8 7 12 12 H 1.09001 * 113.61250 * 220.08565 * 11 10 8 13 13 N 1.46501 * 113.61142 * 89.18830 * 11 10 8 14 14 C 1.36932 * 119.99939 * 107.50245 * 13 11 10 15 15 H 1.08001 * 120.00293 * 359.97438 * 14 13 11 16 16 C 1.38817 * 120.00189 * 179.97438 * 14 13 11 17 17 N 1.31622 * 119.99714 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00208 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47314 * 59.99954 * 18 16 14 20 20 H 1.48502 * 109.47118 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.46912 * 299.99626 * 18 16 14 22 22 C 1.53781 * 87.08260 * 334.63747 * 11 10 8 23 23 N 1.30605 * 115.79066 * 0.26887 * 4 3 2 24 24 S 1.56141 * 109.80165 * 359.58012 * 23 4 3 25 25 H 1.08994 * 109.47157 * 90.00105 * 1 2 3 26 26 H 1.09008 * 109.46988 * 210.00333 * 1 2 3 27 27 H 1.09009 * 109.47008 * 329.99729 * 1 2 3 28 28 H 1.07996 * 124.16206 * 0.05957 * 3 2 1 29 29 H 0.97002 * 120.00080 * 0.02562 * 7 5 4 30 30 H 1.08997 * 113.53543 * 25.33559 * 10 8 7 31 31 H 1.08998 * 113.73879 * 254.47157 * 10 8 7 32 32 H 0.97001 * 119.99973 * 287.49325 * 13 11 10 33 33 H 0.96993 * 120.00291 * 180.02562 * 17 16 14 34 34 H 1.09002 * 113.61445 * 139.98212 * 22 11 10 35 35 H 1.09002 * 113.61408 * 270.79943 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.0744 0.0000 4 6 3.6682 0.6995 -0.0006 5 6 4.7604 1.6935 -0.0001 6 8 4.5013 2.8814 0.0003 7 7 6.0444 1.2840 -0.0002 8 6 7.1278 2.2701 -0.0003 9 1 6.8230 3.2353 -0.4047 10 6 7.8712 2.3716 1.3441 11 6 9.1687 2.4981 0.5284 12 1 10.0078 1.9483 0.9546 13 7 9.5102 3.8794 0.1796 14 6 10.5551 4.5052 0.8055 15 1 11.1271 3.9807 1.5565 16 6 10.8791 5.8139 0.4747 17 7 10.1822 6.4530 -0.4410 18 14 12.3048 6.6674 1.3280 19 1 13.5578 5.9123 1.0732 20 1 12.4426 8.0485 0.8000 21 1 12.0470 6.7202 2.7894 22 6 8.4430 1.7403 -0.5959 23 7 3.8995 -0.5859 -0.0065 24 16 2.5473 -1.3667 -0.0007 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.9807 2.0981 0.0009 29 1 6.2512 0.3363 -0.0009 30 1 7.8176 1.4611 1.9409 31 1 7.6253 3.2670 1.9150 32 1 8.9963 4.3506 -0.4948 33 1 10.4088 7.3673 -0.6725 34 1 8.6579 2.1266 -1.5923 35 1 8.5470 0.6573 -0.5302 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020106547.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:19 Heat of formation + Delta-G solvation = 35.767697 kcal Electronic energy + Delta-G solvation = -18822.109641 eV Core-core repulsion = 15754.798779 eV Total energy + Delta-G solvation = -3067.310862 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.53420 -38.98024 -37.58446 -34.17343 -33.52908 -32.46925 -29.71138 -28.51138 -26.23444 -25.07745 -24.04815 -22.62544 -21.03222 -20.18760 -18.81935 -18.44656 -17.31718 -17.18833 -15.88812 -15.64095 -14.85657 -14.77316 -14.33324 -13.97279 -13.89639 -13.35652 -13.30112 -13.10569 -12.95428 -12.66618 -12.07461 -11.94964 -11.65453 -11.41052 -11.21859 -10.84815 -10.77990 -10.25919 -10.15638 -10.00375 -9.77589 -9.70658 -9.63141 -9.07232 -8.89126 -8.65956 -6.98765 -5.77052 -3.07139 0.32447 1.12565 1.56214 1.60203 3.25916 3.26463 3.45226 3.49336 3.50677 4.32623 4.58098 4.69196 4.91134 4.93523 5.08186 5.10789 5.26318 5.36869 5.43029 5.49440 5.52237 5.60610 5.89847 5.98820 6.11301 6.13176 6.23015 6.39319 6.65138 6.74474 6.79871 7.05056 7.66156 7.71142 8.27662 8.41192 9.51769 10.08122 10.42361 11.45131 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.046554 B = 0.002955 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.310081 B = 9472.261901 C = 9829.976264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.249 4.249 3 C -0.141 4.141 4 C 0.061 3.939 5 C 0.584 3.416 6 O -0.526 6.526 7 N -0.696 5.696 8 C 0.122 3.878 9 H 0.116 0.884 10 C -0.183 4.183 11 C 0.172 3.828 12 H 0.069 0.931 13 N -0.705 5.705 14 C -0.246 4.246 15 H 0.072 0.928 16 C -0.011 4.011 17 N -0.931 5.931 18 Si 0.910 3.090 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 C -0.163 4.163 23 N -0.522 5.522 24 S 0.454 5.546 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.172 0.828 29 H 0.404 0.596 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.386 0.614 33 H 0.257 0.743 34 H 0.074 0.926 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.185 -18.507 0.149 26.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.379 4.379 3 C -0.173 4.173 4 C -0.114 4.114 5 C 0.365 3.635 6 O -0.401 6.401 7 N -0.346 5.346 8 C 0.019 3.981 9 H 0.134 0.866 10 C -0.226 4.226 11 C 0.059 3.941 12 H 0.087 0.913 13 N -0.344 5.344 14 C -0.377 4.377 15 H 0.090 0.910 16 C -0.208 4.208 17 N -0.578 5.578 18 Si 0.741 3.259 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.203 4.203 23 N -0.356 5.356 24 S 0.609 5.391 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.189 0.811 29 H 0.239 0.761 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.221 0.779 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.405 -19.532 0.221 26.838 hybrid contribution 0.224 2.120 0.245 2.146 sum -18.181 -17.412 0.466 25.178 Atomic orbital electron populations 1.20215 0.86049 1.03716 1.03277 1.26095 1.03346 1.00075 1.08433 1.21314 0.90376 1.02056 1.03565 1.21234 0.95210 0.89285 1.05714 1.17301 0.82202 0.86770 0.77247 1.90838 1.83387 1.15957 1.49929 1.45982 1.04986 1.10903 1.72749 1.22785 0.83711 0.92863 0.98748 0.86627 1.24359 1.00167 1.01450 0.96589 1.20900 0.93236 0.87380 0.92563 0.91273 1.42193 1.36925 1.08464 1.46786 1.19229 1.06638 0.95292 1.16506 0.90970 1.24787 0.99633 0.97075 0.99284 1.69657 1.41852 1.12103 1.34206 0.86230 0.82079 0.78689 0.78943 1.21193 1.21668 1.21196 1.23901 0.95266 1.00119 1.01044 1.72272 1.28893 1.10713 1.23765 1.80416 0.87812 1.12575 1.58252 0.90133 0.90701 0.90149 0.81093 0.76068 0.91223 0.90895 0.77948 0.93312 0.90745 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.46 36.01 0.38 0.01 16 2 C -0.25 -2.08 6.58 -35.46 -0.23 -2.31 16 3 C -0.14 -1.59 9.93 -40.26 -0.40 -1.99 16 4 C 0.06 0.81 6.66 -84.06 -0.56 0.25 16 5 C 0.58 9.59 7.81 -12.40 -0.10 9.49 16 6 O -0.53 -10.43 16.26 5.30 0.09 -10.34 16 7 N -0.70 -10.63 5.35 -53.92 -0.29 -10.92 16 8 C 0.12 2.15 4.13 -67.02 -0.28 1.87 16 9 H 0.12 2.37 7.46 -51.93 -0.39 1.98 16 10 C -0.18 -3.36 7.68 -25.82 -0.20 -3.56 16 11 C 0.17 3.45 4.56 -67.12 -0.31 3.15 16 12 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 13 N -0.71 -17.93 5.31 -52.64 -0.28 -18.21 16 14 C -0.25 -6.88 9.97 -15.06 -0.15 -7.03 16 15 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 16 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 17 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 18 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 22 C -0.16 -2.71 7.57 -25.92 -0.20 -2.91 16 23 N -0.52 -6.18 10.71 24.85 0.27 -5.92 16 24 S 0.45 3.69 23.20 -107.50 -2.49 1.20 16 25 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.25 8.14 -51.92 -0.42 -0.18 16 27 H 0.08 0.37 8.14 -51.92 -0.42 -0.06 16 28 H 0.17 1.89 7.99 -52.49 -0.42 1.47 16 29 H 0.40 5.31 8.19 -40.82 -0.33 4.98 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.39 10.48 7.90 -40.82 -0.32 10.16 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 LS Contribution 318.38 15.07 4.80 4.80 Total: -1.00 -32.97 318.38 -8.74 -41.70 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -4.39 Total: 11.38 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.14 Total: -3.46 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: 0.42 Total: -62.83 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -2.49 Total: 1.20 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.97 -8.74 -41.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020106547.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.473 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds