Wall clock time and date at job start Tue Mar 31 2020 05:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.28639 * 124.71900 * 2 1 4 4 C 1.33566 * 115.76165 * 180.02562 * 3 2 1 5 5 C 1.47272 * 123.13954 * 180.02562 * 4 3 2 6 6 O 1.21623 * 120.00035 * 179.97438 * 5 4 3 7 7 N 1.34783 * 119.99921 * 359.97400 * 5 4 3 8 8 C 1.46496 * 120.00004 * 179.97438 * 7 5 4 9 9 H 1.09000 * 112.85017 * 336.20586 * 8 7 5 10 10 C 1.53785 * 113.61192 * 107.50585 * 8 7 5 11 11 C 1.53784 * 87.07784 * 89.11567 * 10 8 7 12 12 H 1.08992 * 113.69585 * 270.86962 * 11 10 8 13 13 N 1.46503 * 113.61062 * 139.97940 * 11 10 8 14 14 C 1.36938 * 119.99668 * 107.50280 * 13 11 10 15 15 H 1.08000 * 120.00423 * 0.02562 * 14 13 11 16 16 C 1.38820 * 119.99744 * 179.97438 * 14 13 11 17 17 N 1.31617 * 120.00152 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99607 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46960 * 90.00542 * 18 16 14 20 20 H 1.48509 * 109.46930 * 209.99857 * 18 16 14 21 21 H 1.48498 * 109.47429 * 330.00050 * 18 16 14 22 22 C 1.53774 * 113.61640 * 205.00254 * 8 7 5 23 23 C 1.35198 * 113.72165 * 0.02562 * 4 3 2 24 24 S 1.70772 * 124.71583 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47027 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47092 * 299.96857 * 1 2 3 27 27 H 1.08998 * 109.47037 * 59.97009 * 1 2 3 28 28 H 0.96994 * 119.99763 * 0.02562 * 7 5 4 29 29 H 1.08996 * 113.61484 * 203.66754 * 10 8 7 30 30 H 1.09002 * 113.61242 * 334.57405 * 10 8 7 31 31 H 0.96995 * 120.00468 * 287.50276 * 13 11 10 32 32 H 0.96992 * 120.00231 * 180.02562 * 17 16 14 33 33 H 1.09001 * 113.61691 * 25.43897 * 22 8 7 34 34 H 1.08997 * 113.61508 * 156.25332 * 22 8 7 35 35 H 1.07999 * 125.59272 * 179.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2397 1.0574 0.0000 4 6 3.5591 0.8494 -0.0005 5 6 4.5464 1.9422 -0.0001 6 8 5.7356 1.6873 -0.0001 7 7 4.1320 3.2247 0.0004 8 6 5.1141 4.3118 0.0014 9 1 6.0796 4.0095 0.4070 10 6 5.2131 5.0537 -1.3420 11 6 4.1045 5.9832 -0.8206 12 1 3.0972 5.6327 -1.0455 13 7 4.3077 7.3917 -1.1688 14 6 3.5207 7.9818 -2.1215 15 1 2.7500 7.4091 -2.6159 16 6 3.7129 9.3165 -2.4511 17 7 4.6518 10.0147 -1.8483 18 14 2.6389 10.1217 -3.7502 19 1 1.4389 10.7114 -3.1043 20 1 3.4084 11.1914 -4.4351 21 1 2.2158 9.1025 -4.7439 22 6 4.5793 5.6246 0.5974 23 6 3.9036 -0.4579 -0.0016 24 16 2.4796 -1.4037 -0.0006 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5134 0.8903 27 1 -0.3633 0.5143 -0.8897 28 1 3.1836 3.4279 0.0008 29 1 6.1685 5.5559 -1.4940 30 1 4.9102 4.4500 -2.1975 31 1 4.9996 7.9062 -0.7246 32 1 4.7859 10.9473 -2.0783 33 1 3.7648 5.4819 1.3076 34 1 5.3612 6.2823 0.9769 35 1 4.9130 -0.8420 -0.0025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020506859.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:16 Heat of formation + Delta-G solvation = 37.751350 kcal Electronic energy + Delta-G solvation = -18895.838382 eV Core-core repulsion = 15828.613538 eV Total energy + Delta-G solvation = -3067.224844 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.67394 -39.24980 -37.72340 -34.01878 -32.75913 -32.37470 -29.86442 -28.65113 -25.87649 -25.09095 -24.20433 -22.26978 -21.57530 -20.02983 -18.98348 -18.83409 -17.13986 -16.57100 -15.96365 -15.65085 -15.08594 -14.91063 -14.42087 -14.24163 -13.82922 -13.71115 -13.48720 -12.87356 -12.64623 -12.58291 -12.26890 -12.06690 -11.82601 -11.60530 -10.88740 -10.77278 -10.30323 -10.26050 -10.15368 -10.03335 -9.94340 -9.87354 -9.53705 -9.20338 -8.88617 -8.72745 -6.96268 -5.78100 -3.06918 0.25434 0.91732 1.29619 1.78178 3.22847 3.30315 3.43277 3.48533 3.50318 3.73311 4.55634 4.59405 4.91266 4.95441 5.03836 5.08602 5.11566 5.24237 5.45873 5.47733 5.52446 5.68058 5.89632 5.96033 6.15553 6.29386 6.35248 6.53995 6.66225 6.71985 7.07218 7.16342 7.66221 7.69776 8.23925 8.40424 9.51650 10.09083 10.43860 11.44343 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025072 B = 0.003342 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.534672 B = 8375.780336 C = 9162.237250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.027 3.973 3 N -0.444 5.444 4 C 0.016 3.984 5 C 0.593 3.407 6 O -0.539 6.539 7 N -0.686 5.686 8 C 0.113 3.887 9 H 0.097 0.903 10 C -0.175 4.175 11 C 0.166 3.834 12 H 0.075 0.925 13 N -0.712 5.712 14 C -0.244 4.244 15 H 0.071 0.929 16 C -0.013 4.013 17 N -0.932 5.932 18 Si 0.907 3.093 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.158 4.158 23 C -0.228 4.228 24 S 0.202 5.798 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.410 0.590 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.386 0.614 32 H 0.256 0.744 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.922 -24.494 6.042 26.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.253 4.253 3 N -0.160 5.160 4 C -0.119 4.119 5 C 0.376 3.624 6 O -0.416 6.416 7 N -0.335 5.335 8 C 0.008 3.992 9 H 0.115 0.885 10 C -0.217 4.217 11 C 0.054 3.946 12 H 0.092 0.908 13 N -0.350 5.350 14 C -0.375 4.375 15 H 0.089 0.911 16 C -0.209 4.209 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.207 1.207 22 C -0.198 4.198 23 C -0.371 4.371 24 S 0.458 5.542 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.246 0.754 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.220 0.780 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -6.666 -25.068 5.896 26.600 hybrid contribution 0.001 1.496 -0.626 1.622 sum -6.665 -23.571 5.270 25.056 Atomic orbital electron populations 1.20453 0.84615 1.03628 1.04951 1.27159 1.02360 0.91408 1.04327 1.66903 1.03021 1.31322 1.14793 1.20489 0.89943 0.93561 1.07867 1.17039 0.86647 0.82017 0.76714 1.90803 1.15978 1.83826 1.51025 1.45537 1.10959 1.04526 1.72516 1.21896 0.92359 0.85528 0.99423 0.88468 1.24307 1.02865 0.98976 0.95572 1.21627 0.95701 0.85946 0.91304 0.90751 1.42401 1.41027 1.05721 1.45839 1.19309 1.11542 0.93496 1.13189 0.91104 1.24767 0.99115 0.96723 1.00276 1.69656 1.34476 1.08748 1.45165 0.86186 0.79660 0.79080 0.81246 1.21677 1.21749 1.20726 1.23855 1.01333 0.95124 0.99513 1.26574 1.06027 0.96812 1.07639 1.82826 0.94732 1.11670 1.64950 0.90149 0.89127 0.89057 0.75439 0.89433 0.92396 0.78005 0.93440 0.91670 0.88897 0.79348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.47 36.01 0.38 -0.04 16 2 C 0.03 0.24 7.34 -13.61 -0.10 0.14 16 3 N -0.44 -5.39 10.12 -8.51 -0.09 -5.47 16 4 C 0.02 0.22 6.70 -84.52 -0.57 -0.35 16 5 C 0.59 9.33 7.80 -12.59 -0.10 9.23 16 6 O -0.54 -9.84 16.31 5.26 0.09 -9.76 16 7 N -0.69 -10.39 5.26 -54.14 -0.28 -10.67 16 8 C 0.11 1.84 4.32 -67.12 -0.29 1.55 16 9 H 0.10 1.61 7.46 -51.93 -0.39 1.23 16 10 C -0.17 -3.24 7.68 -25.92 -0.20 -3.43 16 11 C 0.17 3.33 4.36 -67.12 -0.29 3.04 16 12 H 0.07 1.48 8.10 -51.93 -0.42 1.05 16 13 N -0.71 -17.98 5.40 -52.64 -0.28 -18.26 16 14 C -0.24 -6.83 9.97 -15.06 -0.15 -6.98 16 15 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 17 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 18 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C -0.16 -2.64 7.58 -25.92 -0.20 -2.84 16 23 C -0.23 -2.41 10.62 29.65 0.31 -2.10 16 24 S 0.20 1.46 22.90 -107.50 -2.46 -1.00 16 25 H 0.08 0.24 8.12 -51.93 -0.42 -0.18 16 26 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.41 5.79 8.22 -40.82 -0.34 5.46 16 29 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.39 10.28 7.92 -40.82 -0.32 9.95 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.55 8.12 -51.93 -0.42 1.13 16 35 H 0.19 1.81 8.03 -52.49 -0.42 1.39 16 LS Contribution 319.08 15.07 4.81 4.81 Total: -1.00 -33.14 319.08 -8.21 -41.35 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -4.39 Total: 11.34 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -1.30 Total: -2.24 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: 0.07 Total: -61.95 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.46 Total: -1.00 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.14 -8.21 -41.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020506859.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.105 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds