Wall clock time and date at job start Tue Mar 31 2020 05:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00428 * 2 1 4 4 H 1.48494 * 109.47299 * 240.00122 * 3 2 1 5 5 H 1.48498 * 109.46885 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47208 * 119.99635 * 3 2 1 7 7 C 1.38813 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00526 * 179.97438 * 7 2 1 9 9 N 1.36946 * 120.00196 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.64575 * 14.73355 * 9 7 2 11 11 C 1.54903 * 104.82934 * 155.89359 * 10 9 7 12 12 C 1.55150 * 101.58502 * 37.01210 * 11 10 9 13 13 C 1.47019 * 125.65143 * 194.75920 * 9 7 2 14 14 H 1.08996 * 110.00871 * 300.52807 * 13 9 7 15 15 C 1.53003 * 109.88187 * 61.62037 * 13 9 7 16 16 N 1.46501 * 109.47116 * 182.39771 * 15 13 9 17 17 C 1.34772 * 119.99849 * 185.13414 * 16 15 13 18 18 O 1.21688 * 120.00322 * 359.72586 * 17 16 15 19 19 C 1.46683 * 119.99904 * 179.97438 * 17 16 15 20 20 C 1.35664 * 126.13037 * 179.72420 * 19 17 16 21 21 N 1.30943 * 114.19231 * 179.97438 * 20 19 17 22 22 C 1.29430 * 117.36280 * 0.02562 * 21 20 19 23 23 S 1.70958 * 110.39208 * 359.76309 * 22 21 20 24 24 H 0.96999 * 119.99560 * 0.02562 * 1 2 3 25 25 H 1.09000 * 110.36801 * 37.05282 * 10 9 7 26 26 H 1.09007 * 110.45648 * 274.78178 * 10 9 7 27 27 H 1.08999 * 111.00883 * 278.93148 * 11 10 9 28 28 H 1.09004 * 110.99899 * 155.08143 * 11 10 9 29 29 H 1.08999 * 110.72365 * 206.13645 * 12 11 10 30 30 H 1.09000 * 110.72504 * 82.85567 * 12 11 10 31 31 H 1.09001 * 109.47275 * 62.39506 * 15 13 9 32 32 H 1.09009 * 109.46754 * 302.39732 * 15 13 9 33 33 H 0.96992 * 119.99677 * 5.13272 * 16 15 13 34 34 H 1.08001 * 122.90721 * 359.96954 * 20 19 17 35 35 H 1.07997 * 124.80242 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3882 0.0005 10 6 -0.1074 -2.5530 -0.3047 11 6 -0.2460 -4.0223 -0.7752 12 6 0.7638 -4.7442 0.1555 13 6 1.8974 -3.7078 0.3054 14 1 2.7027 -3.9356 -0.3929 15 6 2.4317 -3.7248 1.7390 16 7 3.0503 -5.0239 2.0143 17 6 3.5001 -5.3072 3.2527 18 8 3.3968 -4.4821 4.1412 19 6 4.1189 -6.6082 3.5285 20 6 4.6165 -7.0206 4.7213 21 7 5.1170 -8.2305 4.7046 22 6 5.0801 -8.8740 3.5823 23 16 4.3439 -7.9179 2.3713 24 1 -0.4849 0.8401 -0.0004 25 1 -0.4069 -1.8701 -1.0997 26 1 -0.7092 -2.3820 0.5880 27 1 0.0429 -4.1266 -1.8210 28 1 -1.2591 -4.3905 -0.6129 29 1 1.1347 -5.6565 -0.3116 30 1 0.3099 -4.9617 1.1223 31 1 1.6095 -3.5590 2.4352 32 1 3.1743 -2.9359 1.8593 33 1 3.1362 -5.6801 1.3052 34 1 4.6011 -6.4043 5.6081 35 1 5.4576 -9.8748 3.4329 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027775430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:16 Heat of formation + Delta-G solvation = 34.927422 kcal Electronic energy + Delta-G solvation = -19409.640526 eV Core-core repulsion = 16342.293227 eV Total energy + Delta-G solvation = -3067.347299 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.21859 -39.09188 -37.61358 -34.38530 -32.52801 -31.07606 -29.65235 -28.69227 -26.31804 -24.89335 -23.94299 -21.66352 -20.36710 -20.16420 -19.61665 -18.83030 -17.04833 -16.60919 -15.94494 -15.44516 -15.21003 -14.64433 -14.37172 -14.23622 -14.12948 -13.86884 -13.44182 -13.06239 -12.14687 -11.92995 -11.88812 -11.76795 -11.37355 -10.97663 -10.79803 -10.32033 -10.28682 -10.15161 -10.01960 -9.90284 -9.82554 -9.79931 -9.71697 -9.34382 -8.79432 -8.61282 -6.88244 -5.80027 -3.17216 0.02938 0.92888 1.31276 2.30553 3.19651 3.22230 3.39595 3.44151 3.44996 4.00933 4.45929 4.78794 4.88687 5.09644 5.28446 5.34894 5.46088 5.57787 5.75979 5.82373 5.99013 6.07208 6.19176 6.40678 6.47212 6.50863 6.62851 6.73315 6.98293 7.28632 7.47477 7.56040 7.59564 7.75739 8.20446 8.24832 9.13819 9.74295 10.41282 11.31868 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025577 B = 0.004093 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.479325 B = 6839.178905 C = 7543.655513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.001 3.999 3 Si 0.911 3.089 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.238 4.238 8 H 0.075 0.925 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.128 4.128 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.108 3.892 16 N -0.714 5.714 17 C 0.586 3.414 18 O -0.525 6.525 19 C -0.277 4.277 20 C 0.107 3.893 21 N -0.476 5.476 22 C 0.026 3.974 23 S 0.165 5.835 24 H 0.255 0.745 25 H 0.072 0.928 26 H 0.027 0.973 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.393 0.607 34 H 0.189 0.811 35 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.299 -18.248 1.629 19.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.197 4.197 3 Si 0.741 3.259 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.366 4.366 8 H 0.093 0.907 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.166 4.166 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.017 4.017 16 N -0.365 5.365 17 C 0.370 3.630 18 O -0.402 6.402 19 C -0.401 4.401 20 C -0.049 4.049 21 N -0.189 5.189 22 C -0.269 4.269 23 S 0.418 5.582 24 H 0.065 0.935 25 H 0.091 0.909 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.227 0.773 34 H 0.206 0.794 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 6.146 -17.827 1.611 18.925 hybrid contribution 0.552 0.976 0.543 1.246 sum 6.698 -16.850 2.154 18.260 Atomic orbital electron populations 1.69927 1.05049 1.25519 1.55542 1.24918 0.95672 0.97897 1.01172 0.86221 0.78617 0.83005 0.78061 1.21035 1.21518 1.20896 1.18941 0.90381 0.82155 1.45122 0.90672 1.44479 1.06471 1.00965 1.79262 1.21460 0.84738 0.90165 0.98901 1.23003 0.97561 0.99591 0.98532 1.22621 0.97168 0.96969 0.99803 1.21136 0.94597 0.88280 0.91695 0.94438 1.22376 0.97701 0.81986 0.99605 1.46078 1.60824 1.19562 1.09987 1.16761 0.78463 0.84346 0.83437 1.90867 1.56734 1.47651 1.44996 1.26025 1.14315 1.01200 0.98566 1.22269 0.93841 0.90930 0.97908 1.66261 1.18992 1.07642 1.25978 1.28793 1.02000 1.04979 0.91153 1.83994 1.52461 1.06467 1.15240 0.93489 0.90935 0.95531 0.92247 0.92282 0.92381 0.91783 0.91133 0.91074 0.77301 0.79415 0.77882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.33 10.58 55.49 0.59 -25.75 16 2 C 0.00 0.03 5.47 -17.43 -0.10 -0.07 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.24 -6.42 9.76 -15.05 -0.15 -6.57 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.56 16 9 N -0.59 -14.33 3.13 -162.57 -0.51 -14.84 16 10 C 0.17 4.03 5.41 -2.53 -0.01 4.01 16 11 C -0.15 -2.64 7.08 -24.59 -0.17 -2.82 16 12 C -0.13 -2.06 6.10 -24.90 -0.15 -2.22 16 13 C 0.15 2.92 3.22 -66.95 -0.22 2.70 16 14 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 15 C 0.11 2.05 5.07 -4.04 -0.02 2.03 16 16 N -0.71 -10.75 5.32 -61.61 -0.33 -11.08 16 17 C 0.59 9.35 7.79 -12.85 -0.10 9.25 16 18 O -0.52 -10.45 16.86 5.20 0.09 -10.36 16 19 C -0.28 -3.46 6.48 -37.09 -0.24 -3.70 16 20 C 0.11 1.31 11.09 -18.85 -0.21 1.10 16 21 N -0.48 -5.29 10.51 -15.38 -0.16 -5.45 16 22 C 0.03 0.21 12.22 51.75 0.63 0.84 16 23 S 0.17 1.38 22.35 -107.50 -2.40 -1.02 16 24 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.07 1.89 6.94 -51.93 -0.36 1.53 16 26 H 0.03 0.68 8.06 -51.92 -0.42 0.26 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.03 7.81 -51.93 -0.41 0.63 16 31 H 0.07 1.49 8.08 -51.93 -0.42 1.07 16 32 H 0.07 1.52 7.92 -51.92 -0.41 1.11 16 33 H 0.39 4.78 7.52 -40.82 -0.31 4.48 16 34 H 0.19 2.19 8.06 -52.49 -0.42 1.77 16 35 H 0.20 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 310.47 15.07 4.68 4.68 Total: -1.00 -32.09 310.47 -8.21 -40.31 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -4.40 Total: 2.09 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -0.74 Total: 4.56 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.41 Total: -57.12 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.40 Total: -1.02 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.09 -8.21 -40.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027775430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.233 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds