Wall clock time and date at job start Tue Mar 31 2020 05:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00428 * 2 1 4 4 H 1.48494 * 109.47299 * 240.00122 * 3 2 1 5 5 H 1.48498 * 109.46885 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47208 * 119.99635 * 3 2 1 7 7 C 1.38813 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00526 * 179.97438 * 7 2 1 9 9 N 1.36946 * 120.00196 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.64575 * 14.73355 * 9 7 2 11 11 C 1.54903 * 104.82934 * 155.89359 * 10 9 7 12 12 C 1.55150 * 101.58502 * 37.01210 * 11 10 9 13 13 C 1.47019 * 125.65143 * 194.75920 * 9 7 2 14 14 H 1.08996 * 110.00871 * 300.52807 * 13 9 7 15 15 C 1.53003 * 109.88187 * 61.62037 * 13 9 7 16 16 N 1.46501 * 109.47116 * 182.39771 * 15 13 9 17 17 C 1.34772 * 119.99849 * 185.13414 * 16 15 13 18 18 O 1.21688 * 120.00322 * 359.72586 * 17 16 15 19 19 C 1.46683 * 119.99904 * 179.97438 * 17 16 15 20 20 C 1.35664 * 126.13037 * 179.72420 * 19 17 16 21 21 N 1.30943 * 114.19231 * 179.97438 * 20 19 17 22 22 C 1.29430 * 117.36280 * 0.02562 * 21 20 19 23 23 S 1.70958 * 110.39208 * 359.76309 * 22 21 20 24 24 H 0.96999 * 119.99560 * 0.02562 * 1 2 3 25 25 H 1.09000 * 110.36801 * 37.05282 * 10 9 7 26 26 H 1.09007 * 110.45648 * 274.78178 * 10 9 7 27 27 H 1.08999 * 111.00883 * 278.93148 * 11 10 9 28 28 H 1.09004 * 110.99899 * 155.08143 * 11 10 9 29 29 H 1.08999 * 110.72365 * 206.13645 * 12 11 10 30 30 H 1.09000 * 110.72504 * 82.85567 * 12 11 10 31 31 H 1.09001 * 109.47275 * 62.39506 * 15 13 9 32 32 H 1.09009 * 109.46754 * 302.39732 * 15 13 9 33 33 H 0.96992 * 119.99677 * 5.13272 * 16 15 13 34 34 H 1.08001 * 122.90721 * 359.96954 * 20 19 17 35 35 H 1.07997 * 124.80242 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3882 0.0005 10 6 -0.1074 -2.5530 -0.3047 11 6 -0.2460 -4.0223 -0.7752 12 6 0.7638 -4.7442 0.1555 13 6 1.8974 -3.7078 0.3054 14 1 2.7027 -3.9356 -0.3929 15 6 2.4317 -3.7248 1.7390 16 7 3.0503 -5.0239 2.0143 17 6 3.5001 -5.3072 3.2527 18 8 3.3968 -4.4821 4.1412 19 6 4.1189 -6.6082 3.5285 20 6 4.6165 -7.0206 4.7213 21 7 5.1170 -8.2305 4.7046 22 6 5.0801 -8.8740 3.5823 23 16 4.3439 -7.9179 2.3713 24 1 -0.4849 0.8401 -0.0004 25 1 -0.4069 -1.8701 -1.0997 26 1 -0.7092 -2.3820 0.5880 27 1 0.0429 -4.1266 -1.8210 28 1 -1.2591 -4.3905 -0.6129 29 1 1.1347 -5.6565 -0.3116 30 1 0.3099 -4.9617 1.1223 31 1 1.6095 -3.5590 2.4352 32 1 3.1743 -2.9359 1.8593 33 1 3.1362 -5.6801 1.3052 34 1 4.6011 -6.4043 5.6081 35 1 5.4576 -9.8748 3.4329 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027775430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:15 Heat of formation + Delta-G solvation = 11.584989 kcal Electronic energy + Delta-G solvation = -19410.652730 eV Core-core repulsion = 16342.293227 eV Total energy + Delta-G solvation = -3068.359503 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.26347 -40.24463 -39.19872 -35.88269 -34.42976 -32.14669 -31.34483 -30.22141 -27.31206 -26.62199 -25.50746 -22.84498 -21.98915 -21.42596 -20.87970 -19.95807 -18.69694 -17.85003 -17.34592 -16.79160 -16.59542 -16.26969 -15.73091 -15.35001 -15.33474 -14.95622 -14.73106 -14.57542 -13.98311 -13.66450 -13.43794 -13.01036 -12.87809 -12.66534 -12.63275 -12.06401 -11.89338 -11.75824 -11.50863 -11.43645 -11.40136 -10.78720 -10.68937 -10.66804 -10.20653 -10.04891 -8.87378 -7.89366 -5.27281 -0.79174 0.17087 0.56210 1.39304 1.44356 1.47687 1.53184 1.95982 2.07410 2.48974 3.30002 3.31578 3.64923 3.78958 3.94179 3.96022 4.14463 4.25423 4.35163 4.42358 4.53147 4.70851 4.92691 4.98211 4.99259 5.11629 5.15703 5.27372 5.45988 5.52992 5.66073 5.77993 6.21760 6.33642 6.55204 7.01548 7.08333 7.75105 8.40795 9.21368 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025577 B = 0.004093 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.479325 B = 6839.178905 C = 7543.655513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.057 4.057 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.243 4.243 8 H 0.077 0.923 9 N -0.610 5.610 10 C 0.173 3.827 11 C -0.132 4.132 12 C -0.115 4.115 13 C 0.148 3.852 14 H 0.055 0.945 15 C 0.128 3.872 16 N -0.700 5.700 17 C 0.588 3.412 18 O -0.577 6.577 19 C -0.318 4.318 20 C 0.111 3.889 21 N -0.505 5.505 22 C 0.044 3.956 23 S 0.236 5.764 24 H 0.248 0.752 25 H 0.036 0.964 26 H -0.009 1.009 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.039 0.961 33 H 0.412 0.588 34 H 0.179 0.821 35 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.668 -21.805 0.375 23.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.251 4.251 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.373 4.373 8 H 0.095 0.905 9 N -0.334 5.334 10 C 0.048 3.952 11 C -0.171 4.171 12 C -0.153 4.153 13 C 0.040 3.960 14 H 0.072 0.928 15 C 0.002 3.998 16 N -0.351 5.351 17 C 0.374 3.626 18 O -0.458 6.458 19 C -0.443 4.443 20 C -0.047 4.047 21 N -0.218 5.218 22 C -0.249 4.249 23 S 0.491 5.509 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.009 0.991 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.125 0.875 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.248 0.752 34 H 0.196 0.804 35 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 7.543 -21.458 0.311 22.748 hybrid contribution 0.203 1.917 0.926 2.139 sum 7.746 -19.541 1.237 21.056 Atomic orbital electron populations 1.70132 1.06300 1.25506 1.57299 1.25676 0.96480 1.00981 1.01971 0.85269 0.77356 0.79236 0.78194 1.19838 1.21947 1.20908 1.19277 0.90787 0.83591 1.43609 0.90483 1.44743 1.06926 1.02114 1.79662 1.21278 0.84029 0.93573 0.96332 1.22867 0.99642 0.95173 0.99404 1.22627 0.95222 0.97468 0.99953 1.21355 0.96230 0.86917 0.91488 0.92759 1.21820 0.95937 0.83129 0.98936 1.45730 1.60387 1.18420 1.10595 1.17179 0.77519 0.85215 0.82665 1.90833 1.58729 1.49819 1.46431 1.25631 1.16558 1.01346 1.00751 1.22277 0.93264 0.91468 0.97730 1.66338 1.20527 1.07379 1.27601 1.29626 0.99228 1.06013 0.90074 1.83694 1.51016 1.03410 1.12811 0.94281 0.94526 0.99073 0.90904 0.89885 0.87477 0.91734 0.94051 0.94277 0.75151 0.80438 0.73518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.83 10.58 21.65 0.23 -56.60 16 2 C -0.06 -3.25 5.47 84.86 0.46 -2.79 16 3 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 7 C -0.24 -13.49 9.76 84.03 0.82 -12.66 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.61 -30.27 3.13 -668.25 -2.09 -32.36 16 10 C 0.17 8.30 5.41 86.85 0.47 8.77 16 11 C -0.13 -4.43 7.08 31.98 0.23 -4.20 16 12 C -0.12 -3.36 6.10 31.78 0.19 -3.16 16 13 C 0.15 5.52 3.22 45.34 0.15 5.66 16 14 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 15 C 0.13 4.93 5.07 86.38 0.44 5.36 16 16 N -0.70 -20.36 5.32 -467.07 -2.49 -22.84 16 17 C 0.59 18.76 7.79 86.45 0.67 19.44 16 18 O -0.58 -24.03 16.86 -4.31 -0.07 -24.10 16 19 C -0.32 -7.52 6.48 23.88 0.15 -7.36 16 20 C 0.11 2.62 11.09 84.23 0.93 3.55 16 21 N -0.50 -10.00 10.51 -202.56 -2.13 -12.13 16 22 C 0.04 0.52 12.22 130.60 1.60 2.11 16 23 S 0.24 3.00 22.35 -56.49 -1.26 1.74 16 24 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 25 H 0.04 1.99 6.94 -2.39 -0.02 1.97 16 26 H -0.01 -0.47 8.06 -2.38 -0.02 -0.49 16 27 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 29 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.06 1.91 7.81 -2.39 -0.02 1.89 16 31 H 0.04 1.83 8.08 -2.39 -0.02 1.81 16 32 H 0.04 1.74 7.92 -2.38 -0.02 1.72 16 33 H 0.41 8.78 7.52 -92.71 -0.70 8.08 16 34 H 0.18 4.32 8.06 -2.91 -0.02 4.30 16 35 H 0.25 0.49 8.06 -2.91 -0.02 0.46 16 Total: -1.00 -75.33 310.47 0.75 -74.59 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 0.41 Total: 8.74 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 6.12 Total: 14.71 kcal Atomic # 7 Polarization: -117.45 SS G_CDS: -6.48 Total: -123.92 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.07 Total: -24.10 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -1.26 Total: 1.74 kcal Total: -75.33 0.75 -74.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027775430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.174 kcal (2) G-P(sol) polarization free energy of solvation -75.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds