Wall clock time and date at job start Tue Mar 31 2020 05:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99841 * 2 1 4 4 H 1.48500 * 109.46863 * 269.99866 * 3 2 1 5 5 H 1.48497 * 109.47522 * 30.00035 * 3 2 1 6 6 H 1.48503 * 109.47211 * 150.00197 * 3 2 1 7 7 C 1.38811 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00107 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99831 * 359.97438 * 7 2 1 10 10 C 1.47430 * 125.64722 * 14.73937 * 9 7 2 11 11 C 1.54912 * 104.83061 * 155.89025 * 10 9 7 12 12 C 1.55150 * 101.58410 * 37.00677 * 11 10 9 13 13 C 1.47023 * 125.65284 * 194.75813 * 9 7 2 14 14 H 1.09006 * 110.01061 * 300.53752 * 13 9 7 15 15 C 1.53006 * 109.88129 * 61.62084 * 13 9 7 16 16 N 1.46499 * 109.47190 * 182.39674 * 15 13 9 17 17 C 1.34771 * 119.99656 * 185.14119 * 16 15 13 18 18 O 1.21574 * 120.00214 * 359.97438 * 17 16 15 19 19 C 1.47692 * 119.99820 * 180.02562 * 17 16 15 20 20 C 1.39481 * 122.10488 * 179.73962 * 19 17 16 21 21 C 1.35007 * 111.68528 * 179.78341 * 20 19 17 22 22 S 1.71759 * 105.44774 * 0.42474 * 21 20 19 23 23 N 1.30613 * 122.10194 * 0.02562 * 19 17 16 24 24 H 0.97002 * 120.00127 * 0.02562 * 1 2 3 25 25 H 1.08997 * 110.36531 * 37.05287 * 10 9 7 26 26 H 1.08995 * 110.45600 * 274.77057 * 10 9 7 27 27 H 1.09002 * 111.00563 * 278.93186 * 11 10 9 28 28 H 1.09005 * 111.00465 * 155.08399 * 11 10 9 29 29 H 1.08999 * 110.72487 * 206.13239 * 12 11 10 30 30 H 1.09006 * 110.71936 * 82.86189 * 12 11 10 31 31 H 1.08998 * 109.46502 * 62.39599 * 15 13 9 32 32 H 1.09004 * 109.46911 * 302.39929 * 15 13 9 33 33 H 0.96997 * 120.00061 * 5.41129 * 16 15 13 34 34 H 1.08001 * 124.15625 * 359.97438 * 20 19 17 35 35 H 1.08001 * 127.27721 * 180.20867 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 -0.1075 -2.5530 -0.3025 11 6 -0.2465 -4.0226 -0.7724 12 6 0.7641 -4.7440 0.1579 13 6 1.8977 -3.7076 0.3066 14 1 2.7026 -3.9357 -0.3922 15 6 2.4331 -3.7239 1.7398 16 7 3.0519 -5.0229 2.0152 17 6 3.5024 -5.3057 3.2535 18 8 3.3957 -4.4826 4.1419 19 6 4.1268 -6.6151 3.5310 20 6 4.6126 -6.9518 4.7943 21 6 5.1341 -8.1970 4.8127 22 16 4.9554 -8.7915 3.2112 23 7 4.2636 -7.5285 2.6075 24 1 -0.4850 0.8401 -0.0004 25 1 -0.4076 -1.8705 -1.0977 26 1 -0.7086 -2.3818 0.5904 27 1 0.0417 -4.1273 -1.8184 28 1 -1.2594 -4.3908 -0.6092 29 1 1.1346 -5.6565 -0.3091 30 1 0.3108 -4.9612 1.1251 31 1 1.6114 -3.5579 2.4364 32 1 3.1758 -2.9350 1.8593 33 1 3.1409 -5.6780 1.3054 34 1 4.5736 -6.2980 5.6531 35 1 5.5741 -8.7095 5.6554 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027961412.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:21 Heat of formation + Delta-G solvation = 31.119644 kcal Electronic energy + Delta-G solvation = -19472.340017 eV Core-core repulsion = 16404.827600 eV Total energy + Delta-G solvation = -3067.512417 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.37942 -38.43045 -37.43676 -34.32917 -32.48957 -31.74625 -29.70804 -28.81274 -26.59636 -24.77703 -23.74958 -21.58980 -20.34367 -20.01598 -19.44608 -18.46791 -17.74756 -16.60226 -15.76673 -15.52737 -14.88301 -14.72510 -14.29893 -14.06386 -13.78296 -13.48504 -13.19021 -12.93170 -12.07876 -11.87469 -11.74019 -11.48496 -11.40021 -11.27971 -10.93773 -10.77347 -10.23138 -10.10821 -10.09957 -9.99464 -9.83795 -9.76382 -9.66890 -9.05587 -8.65300 -8.55907 -6.83522 -5.76121 -3.12889 0.39752 1.23317 1.60512 1.68028 3.35470 3.35893 3.42158 3.46859 3.48721 4.47971 4.55233 4.90388 5.10227 5.33583 5.35249 5.42488 5.52684 5.59852 5.63772 5.83044 6.05303 6.10889 6.19457 6.27406 6.47378 6.54633 6.62246 6.70600 6.81535 7.06476 7.52370 7.62041 7.76384 7.79958 8.25812 8.37905 9.18091 9.78540 10.46117 11.35906 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025934 B = 0.003946 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.404255 B = 7094.127776 C = 7797.722361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.000 4.000 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.235 4.235 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.107 3.893 16 N -0.701 5.701 17 C 0.581 3.419 18 O -0.531 6.531 19 C 0.056 3.944 20 C -0.134 4.134 21 C -0.285 4.285 22 S 0.456 5.544 23 N -0.519 5.519 24 H 0.254 0.746 25 H 0.072 0.928 26 H 0.026 0.974 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.404 0.596 34 H 0.172 0.828 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.885 -19.341 5.618 21.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.363 4.363 8 H 0.094 0.906 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.044 3.956 14 H 0.056 0.944 15 C -0.018 4.018 16 N -0.352 5.352 17 C 0.361 3.639 18 O -0.407 6.407 19 C -0.119 4.119 20 C -0.167 4.167 21 C -0.434 4.434 22 S 0.610 5.390 23 N -0.353 5.353 24 H 0.064 0.936 25 H 0.090 0.910 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.239 0.761 34 H 0.190 0.810 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 7.764 -19.684 4.477 21.629 hybrid contribution 0.365 1.889 1.312 2.328 sum 8.129 -17.796 5.789 20.403 Atomic orbital electron populations 1.69939 1.05036 1.25325 1.55817 1.24915 0.95672 0.97866 1.01325 0.86143 0.78829 0.83380 0.77566 1.21528 1.21570 1.20500 1.18995 0.90423 0.82173 1.44737 0.90627 1.44489 1.06439 1.01020 1.79312 1.21453 0.84757 0.90155 0.98867 1.23009 0.97550 0.99601 0.98549 1.22604 0.97081 0.97006 0.99742 1.21127 0.94610 0.88131 0.91777 0.94412 1.22356 0.97644 0.82256 0.99519 1.46009 1.59320 1.19371 1.10458 1.17270 0.78767 0.84322 0.83516 1.90819 1.57043 1.47649 1.45209 1.21386 1.04166 0.96241 0.90099 1.21457 0.99848 0.96860 0.98528 1.27182 1.08482 1.00616 1.07082 1.80470 1.45296 1.17542 0.95660 1.72303 1.21818 1.06921 1.34292 0.93593 0.90966 0.95558 0.92288 0.92332 0.92334 0.91848 0.91227 0.91185 0.76118 0.81034 0.79688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.77 10.58 55.49 0.59 -26.19 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.49 9.76 -15.06 -0.15 -6.64 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.59 -14.81 3.13 -162.57 -0.51 -15.32 16 10 C 0.17 4.16 5.41 -2.52 -0.01 4.15 16 11 C -0.15 -2.78 7.08 -24.58 -0.17 -2.95 16 12 C -0.13 -2.20 6.10 -24.90 -0.15 -2.35 16 13 C 0.15 3.10 3.22 -66.95 -0.22 2.88 16 14 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 15 C 0.11 2.14 5.07 -4.04 -0.02 2.12 16 16 N -0.70 -11.72 5.32 -61.30 -0.33 -12.05 16 17 C 0.58 9.97 7.81 -12.40 -0.10 9.88 16 18 O -0.53 -10.83 16.65 5.30 0.09 -10.74 16 19 C 0.06 0.78 6.66 -84.06 -0.56 0.22 16 20 C -0.13 -1.50 9.98 -40.27 -0.40 -1.90 16 21 C -0.28 -2.24 11.41 29.58 0.34 -1.90 16 22 S 0.46 3.68 23.20 -107.50 -2.49 1.18 16 23 N -0.52 -6.36 10.71 24.85 0.27 -6.09 16 24 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.07 1.93 6.94 -51.93 -0.36 1.57 16 26 H 0.03 0.69 8.06 -51.93 -0.42 0.27 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 1.10 7.81 -51.93 -0.41 0.69 16 31 H 0.07 1.53 8.08 -51.93 -0.42 1.11 16 32 H 0.07 1.56 7.92 -51.93 -0.41 1.15 16 33 H 0.40 5.97 7.80 -40.82 -0.32 5.65 16 34 H 0.17 1.84 7.99 -52.49 -0.42 1.42 16 35 H 0.19 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 309.80 15.07 4.67 4.67 Total: -1.00 -32.10 309.80 -8.69 -40.80 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -4.41 Total: 3.15 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -1.54 Total: 3.38 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 0.02 Total: -59.64 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 3.68 SS G_CDS: -2.49 Total: 1.18 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.10 -8.69 -40.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027961412.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.919 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds