Wall clock time and date at job start Tue Mar 31 2020 05:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99959 * 2 1 4 4 H 1.48496 * 109.46970 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47083 * 299.99296 * 3 2 1 6 6 H 1.48501 * 109.47346 * 59.99649 * 3 2 1 7 7 C 1.38813 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99898 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00231 * 0.02562 * 7 2 1 10 10 C 1.47427 * 125.64458 * 346.25935 * 9 7 2 11 11 C 1.54911 * 104.92763 * 204.09920 * 10 9 7 12 12 C 1.55280 * 101.52761 * 323.12951 * 11 10 9 13 13 C 1.47019 * 125.65189 * 166.29081 * 9 7 2 14 14 H 1.09003 * 109.88217 * 59.49720 * 13 9 7 15 15 C 1.52998 * 109.88241 * 298.33224 * 13 9 7 16 16 N 1.46500 * 109.47479 * 175.50089 * 15 13 9 17 17 C 1.34771 * 120.00266 * 184.66200 * 16 15 13 18 18 O 1.21578 * 119.99815 * 0.02562 * 17 16 15 19 19 C 1.47695 * 120.00163 * 179.97438 * 17 16 15 20 20 C 1.39485 * 122.10246 * 180.02562 * 19 17 16 21 21 C 1.34996 * 111.68373 * 179.97438 * 20 19 17 22 22 S 1.71762 * 105.44974 * 359.97438 * 21 20 19 23 23 N 1.30602 * 122.10109 * 359.71060 * 19 17 16 24 24 H 0.96998 * 119.99971 * 0.02562 * 1 2 3 25 25 H 1.08995 * 110.36942 * 322.98869 * 10 9 7 26 26 H 1.09003 * 110.36740 * 85.20576 * 10 9 7 27 27 H 1.08997 * 111.00694 * 81.11774 * 11 10 9 28 28 H 1.09007 * 111.00463 * 204.97240 * 11 10 9 29 29 H 1.08999 * 110.62008 * 277.00763 * 12 11 10 30 30 H 1.09002 * 110.75484 * 153.77928 * 12 11 10 31 31 H 1.09002 * 109.47426 * 295.50340 * 15 13 9 32 32 H 1.09000 * 109.46823 * 55.50023 * 15 13 9 33 33 H 0.97002 * 119.99808 * 4.65603 * 16 15 13 34 34 H 1.07996 * 124.15936 * 359.93969 * 20 19 17 35 35 H 1.08002 * 127.27834 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1119 -2.5502 0.2846 11 6 -0.2607 -4.0149 0.7664 12 6 0.7668 -4.7457 -0.1399 13 6 1.9024 -3.7105 -0.2821 14 1 2.6954 -3.9296 0.4331 15 6 2.4594 -3.7416 -1.7067 16 7 3.1265 -5.0245 -1.9425 17 6 3.7769 -5.2427 -3.1025 18 8 3.8105 -4.3747 -3.9531 19 6 4.4498 -6.5358 -3.3399 20 6 5.1357 -6.8082 -4.5236 21 6 5.6692 -8.0483 -4.5168 22 16 5.2347 -8.7250 -2.9991 23 7 4.4452 -7.4939 -2.4523 24 1 -0.4850 0.8400 -0.0004 25 1 -0.4240 -1.8596 1.0680 26 1 -0.6981 -2.3869 -0.6198 27 1 0.0102 -4.1098 1.8179 28 1 -1.2714 -4.3834 0.5902 29 1 0.3282 -4.9729 -1.1115 30 1 1.1302 -5.6532 0.3421 31 1 1.6431 -3.6203 -2.4188 32 1 3.1763 -2.9305 -1.8343 33 1 3.1000 -5.7168 -1.2636 34 1 5.2280 -6.1128 -5.3447 35 1 6.2477 -8.5158 -5.2999 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027961413.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:23 Heat of formation + Delta-G solvation = 31.223447 kcal Electronic energy + Delta-G solvation = -19462.890121 eV Core-core repulsion = 16395.382206 eV Total energy + Delta-G solvation = -3067.507915 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.38079 -38.42979 -37.44065 -34.33131 -32.48954 -31.74814 -29.70920 -28.81453 -26.59909 -24.77801 -23.75329 -21.59469 -20.36345 -19.99206 -19.44915 -18.46845 -17.75298 -16.62953 -15.77371 -15.52099 -14.90107 -14.72500 -14.24917 -14.09228 -13.76351 -13.48716 -13.20107 -12.90510 -12.08880 -11.87287 -11.76767 -11.48756 -11.40348 -11.31900 -10.93379 -10.79867 -10.20097 -10.10134 -10.09693 -9.96794 -9.84184 -9.75006 -9.66313 -9.05876 -8.68437 -8.55721 -6.84012 -5.75776 -3.12385 0.39681 1.23239 1.60376 1.67945 3.34876 3.36242 3.41926 3.47479 3.49397 4.47993 4.55195 4.90280 5.10176 5.33514 5.35057 5.41537 5.51878 5.59772 5.63779 5.82728 6.03280 6.10949 6.19182 6.26462 6.47339 6.54159 6.62002 6.70340 6.80810 7.06079 7.53265 7.61489 7.76153 7.80541 8.25921 8.37631 9.18328 9.78706 10.45735 11.35999 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025306 B = 0.003980 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.211467 B = 7032.903591 C = 7812.969441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.002 4.002 3 Si 0.911 3.089 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.233 4.233 8 H 0.077 0.923 9 N -0.589 5.589 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.128 4.128 13 C 0.152 3.848 14 H 0.039 0.961 15 C 0.107 3.893 16 N -0.701 5.701 17 C 0.581 3.419 18 O -0.531 6.531 19 C 0.056 3.944 20 C -0.134 4.134 21 C -0.285 4.285 22 S 0.456 5.544 23 N -0.519 5.519 24 H 0.253 0.747 25 H 0.074 0.926 26 H 0.025 0.975 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.404 0.596 34 H 0.172 0.828 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.361 -19.275 -5.226 21.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.361 4.361 8 H 0.095 0.905 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.166 4.166 13 C 0.043 3.957 14 H 0.057 0.943 15 C -0.018 4.018 16 N -0.352 5.352 17 C 0.361 3.639 18 O -0.407 6.407 19 C -0.119 4.119 20 C -0.167 4.167 21 C -0.434 4.434 22 S 0.610 5.390 23 N -0.353 5.353 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.239 0.761 34 H 0.190 0.810 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 8.074 -19.676 -4.131 21.666 hybrid contribution 0.533 1.942 -1.273 2.383 sum 8.607 -17.734 -5.404 20.440 Atomic orbital electron populations 1.69951 1.05014 1.25175 1.56056 1.24901 0.95684 0.97857 1.01432 0.86063 0.78942 0.83636 0.77247 1.20363 1.21582 1.21714 1.19052 0.90472 0.82168 1.44452 0.90544 1.44506 1.05873 1.00775 1.80162 1.21476 0.84629 0.90317 0.98918 1.23027 0.97431 0.99553 0.98663 1.22647 0.97044 0.97036 0.99845 1.21128 0.94507 0.88060 0.91967 0.94349 1.22356 0.96787 0.83032 0.99607 1.46013 1.52823 1.18866 1.17486 1.17277 0.79031 0.84596 0.82973 1.90820 1.61098 1.44132 1.44644 1.21384 1.03134 0.95742 0.91633 1.21454 0.98557 0.97496 0.99181 1.27180 1.08450 1.00408 1.07314 1.80470 1.37956 1.17724 1.02817 1.72297 1.23585 1.06633 1.32822 0.93663 0.90745 0.95656 0.92290 0.92296 0.91828 0.92298 0.91638 0.90760 0.76114 0.81030 0.79684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.78 10.54 55.49 0.58 -26.19 16 2 C 0.00 -0.05 5.47 -17.43 -0.10 -0.14 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.23 -6.46 9.73 -15.06 -0.15 -6.60 16 8 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 9 N -0.59 -14.82 3.13 -162.57 -0.51 -15.33 16 10 C 0.17 4.13 5.42 -2.53 -0.01 4.11 16 11 C -0.15 -2.76 7.10 -24.51 -0.17 -2.93 16 12 C -0.13 -2.20 6.07 -24.83 -0.15 -2.36 16 13 C 0.15 3.09 3.22 -66.96 -0.22 2.88 16 14 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 15 C 0.11 2.14 5.09 -4.04 -0.02 2.12 16 16 N -0.70 -11.74 5.40 -61.30 -0.33 -12.07 16 17 C 0.58 9.99 7.81 -12.40 -0.10 9.89 16 18 O -0.53 -10.83 16.66 5.30 0.09 -10.74 16 19 C 0.06 0.78 6.66 -84.06 -0.56 0.22 16 20 C -0.13 -1.50 9.98 -40.27 -0.40 -1.90 16 21 C -0.28 -2.24 11.41 29.58 0.34 -1.90 16 22 S 0.46 3.68 23.20 -107.50 -2.49 1.18 16 23 N -0.52 -6.36 10.71 24.84 0.27 -6.10 16 24 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.07 1.99 6.86 -51.93 -0.36 1.63 16 26 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.08 7.78 -51.93 -0.40 0.68 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.41 8.04 -51.93 -0.42 1.00 16 32 H 0.07 1.67 7.86 -51.93 -0.41 1.27 16 33 H 0.40 5.97 7.71 -40.82 -0.31 5.65 16 34 H 0.17 1.85 7.99 -52.49 -0.42 1.43 16 35 H 0.19 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 309.55 15.07 4.66 4.66 Total: -1.00 -32.15 309.55 -8.69 -40.84 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -4.40 Total: 3.10 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -1.54 Total: 3.37 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 0.01 Total: -59.69 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 3.68 SS G_CDS: -2.49 Total: 1.18 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.15 -8.69 -40.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027961413.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.065 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds