Wall clock time and date at job start Tue Mar 31 2020 05:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99959 * 2 1 4 4 H 1.48496 * 109.46970 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47083 * 299.99296 * 3 2 1 6 6 H 1.48501 * 109.47346 * 59.99649 * 3 2 1 7 7 C 1.38813 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99898 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00231 * 0.02562 * 7 2 1 10 10 C 1.47427 * 125.64458 * 346.25935 * 9 7 2 11 11 C 1.54911 * 104.92763 * 204.09920 * 10 9 7 12 12 C 1.55280 * 101.52761 * 323.12951 * 11 10 9 13 13 C 1.47019 * 125.65189 * 166.29081 * 9 7 2 14 14 H 1.09003 * 109.88217 * 59.49720 * 13 9 7 15 15 C 1.52998 * 109.88241 * 298.33224 * 13 9 7 16 16 N 1.46500 * 109.47479 * 175.50089 * 15 13 9 17 17 C 1.34771 * 120.00266 * 184.66200 * 16 15 13 18 18 O 1.21578 * 119.99815 * 0.02562 * 17 16 15 19 19 C 1.47695 * 120.00163 * 179.97438 * 17 16 15 20 20 C 1.39485 * 122.10246 * 180.02562 * 19 17 16 21 21 C 1.34996 * 111.68373 * 179.97438 * 20 19 17 22 22 S 1.71762 * 105.44974 * 359.97438 * 21 20 19 23 23 N 1.30602 * 122.10109 * 359.71060 * 19 17 16 24 24 H 0.96998 * 119.99971 * 0.02562 * 1 2 3 25 25 H 1.08995 * 110.36942 * 322.98869 * 10 9 7 26 26 H 1.09003 * 110.36740 * 85.20576 * 10 9 7 27 27 H 1.08997 * 111.00694 * 81.11774 * 11 10 9 28 28 H 1.09007 * 111.00463 * 204.97240 * 11 10 9 29 29 H 1.08999 * 110.62008 * 277.00763 * 12 11 10 30 30 H 1.09002 * 110.75484 * 153.77928 * 12 11 10 31 31 H 1.09002 * 109.47426 * 295.50340 * 15 13 9 32 32 H 1.09000 * 109.46823 * 55.50023 * 15 13 9 33 33 H 0.97002 * 119.99808 * 4.65603 * 16 15 13 34 34 H 1.07996 * 124.15936 * 359.93969 * 20 19 17 35 35 H 1.08002 * 127.27834 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1119 -2.5502 0.2846 11 6 -0.2607 -4.0149 0.7664 12 6 0.7668 -4.7457 -0.1399 13 6 1.9024 -3.7105 -0.2821 14 1 2.6954 -3.9296 0.4331 15 6 2.4594 -3.7416 -1.7067 16 7 3.1265 -5.0245 -1.9425 17 6 3.7769 -5.2427 -3.1025 18 8 3.8105 -4.3747 -3.9531 19 6 4.4498 -6.5358 -3.3399 20 6 5.1357 -6.8082 -4.5236 21 6 5.6692 -8.0483 -4.5168 22 16 5.2347 -8.7250 -2.9991 23 7 4.4452 -7.4939 -2.4523 24 1 -0.4850 0.8400 -0.0004 25 1 -0.4240 -1.8596 1.0680 26 1 -0.6981 -2.3869 -0.6198 27 1 0.0102 -4.1098 1.8179 28 1 -1.2714 -4.3834 0.5902 29 1 0.3282 -4.9729 -1.1115 30 1 1.1302 -5.6532 0.3421 31 1 1.6431 -3.6203 -2.4188 32 1 3.1763 -2.9305 -1.8343 33 1 3.1000 -5.7168 -1.2636 34 1 5.2280 -6.1128 -5.3447 35 1 6.2477 -8.5158 -5.2999 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027961413.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:22 Heat of formation + Delta-G solvation = 8.214364 kcal Electronic energy + Delta-G solvation = -19463.887870 eV Core-core repulsion = 16395.382206 eV Total energy + Delta-G solvation = -3068.505664 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.49850 -39.76791 -38.96876 -35.88565 -34.44044 -32.59348 -31.47369 -30.52807 -27.78282 -26.63908 -25.33788 -22.66744 -22.01547 -21.37077 -20.97253 -19.31263 -19.04257 -18.43980 -17.35855 -16.73179 -16.62784 -16.16490 -15.78182 -15.41826 -15.27067 -14.50091 -14.45421 -14.21398 -13.98360 -13.67896 -13.44959 -13.06535 -12.88382 -12.71759 -12.32400 -12.22046 -11.99518 -11.88357 -11.73514 -11.50401 -11.44184 -11.12328 -10.84964 -10.71219 -10.25473 -9.72149 -8.89307 -7.90077 -5.28087 -0.43518 0.55590 0.73333 0.79955 1.43016 1.45050 1.54672 2.06658 2.13222 2.48287 3.29051 3.60768 3.76631 3.84688 3.94545 3.95039 4.22518 4.38793 4.42035 4.50882 4.55299 4.68677 4.85914 4.91482 4.95751 5.10635 5.16438 5.23359 5.33123 5.44444 5.51711 5.64716 5.76402 6.20913 6.44896 7.05466 7.07689 7.73425 8.39250 9.20666 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025306 B = 0.003980 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.211467 B = 7032.903591 C = 7812.969441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.058 4.058 3 Si 0.973 3.027 4 H -0.269 1.269 5 H -0.293 1.293 6 H -0.287 1.287 7 C -0.242 4.242 8 H 0.075 0.925 9 N -0.611 5.611 10 C 0.173 3.827 11 C -0.132 4.132 12 C -0.114 4.114 13 C 0.149 3.851 14 H 0.047 0.953 15 C 0.127 3.873 16 N -0.692 5.692 17 C 0.578 3.422 18 O -0.575 6.575 19 C 0.028 3.972 20 C -0.159 4.159 21 C -0.264 4.264 22 S 0.549 5.451 23 N -0.552 5.552 24 H 0.248 0.752 25 H 0.040 0.960 26 H -0.007 1.007 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.417 0.583 34 H 0.166 0.834 35 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.965 -22.799 -5.092 25.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.251 4.251 3 Si 0.801 3.199 4 H -0.193 1.193 5 H -0.220 1.220 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.093 0.907 9 N -0.335 5.335 10 C 0.048 3.952 11 C -0.170 4.170 12 C -0.152 4.152 13 C 0.041 3.959 14 H 0.065 0.935 15 C 0.001 3.999 16 N -0.343 5.343 17 C 0.360 3.640 18 O -0.455 6.455 19 C -0.144 4.144 20 C -0.191 4.191 21 C -0.413 4.413 22 S 0.704 5.296 23 N -0.389 5.389 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.011 0.989 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.119 0.881 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.254 0.746 34 H 0.184 0.816 35 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 9.701 -23.248 -3.992 25.505 hybrid contribution 0.138 2.818 -1.323 3.117 sum 9.839 -20.430 -5.315 23.290 Atomic orbital electron populations 1.70147 1.06243 1.25383 1.57466 1.25666 0.96540 1.00934 1.01995 0.85101 0.78215 0.79745 0.76840 1.19339 1.22024 1.21349 1.19334 0.90716 0.83626 1.43423 0.90731 1.44761 1.06408 1.01810 1.80522 1.21298 0.83855 0.93524 0.96526 1.22895 0.99490 0.95318 0.99337 1.22626 0.95147 0.97243 1.00201 1.21302 0.95915 0.86907 0.91751 0.93517 1.21812 0.95285 0.83826 0.98954 1.45749 1.52675 1.17775 1.18138 1.17847 0.78306 0.85762 0.82038 1.90782 1.62644 1.46146 1.45891 1.20891 1.05472 0.94696 0.93369 1.21454 0.99871 0.99150 0.98605 1.27632 1.06695 0.98786 1.08181 1.80157 1.34212 1.14034 1.01237 1.71929 1.25177 1.07848 1.33975 0.94225 0.94193 0.98875 0.91125 0.89660 0.91520 0.88139 0.93887 0.94174 0.74621 0.81617 0.75792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.58 10.54 21.65 0.23 -57.35 16 2 C -0.06 -3.34 5.47 84.86 0.46 -2.88 16 3 Si 0.97 47.16 29.55 68.60 2.03 49.19 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 5 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 7 C -0.24 -13.84 9.73 84.03 0.82 -13.02 16 8 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.61 -31.58 3.13 -668.26 -2.09 -33.67 16 10 C 0.17 8.57 5.42 86.86 0.47 9.04 16 11 C -0.13 -4.70 7.10 32.03 0.23 -4.47 16 12 C -0.11 -3.70 6.07 31.83 0.19 -3.50 16 13 C 0.15 6.04 3.22 45.34 0.15 6.18 16 14 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 15 C 0.13 5.27 5.09 86.38 0.44 5.71 16 16 N -0.69 -23.28 5.40 -466.12 -2.52 -25.80 16 17 C 0.58 20.30 7.81 86.74 0.68 20.98 16 18 O -0.58 -24.67 16.66 -3.96 -0.07 -24.74 16 19 C 0.03 0.75 6.66 42.13 0.28 1.03 16 20 C -0.16 -3.32 9.98 21.82 0.22 -3.10 16 21 C -0.26 -3.11 11.41 67.07 0.77 -2.35 16 22 S 0.55 6.59 23.20 -56.49 -1.31 5.28 16 23 N -0.55 -12.20 10.71 -75.34 -0.81 -13.01 16 24 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.04 2.22 6.86 -2.39 -0.02 2.21 16 26 H -0.01 -0.37 8.08 -2.39 -0.02 -0.39 16 27 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 29 H 0.07 2.14 7.78 -2.39 -0.02 2.12 16 30 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.04 1.95 8.04 -2.39 -0.02 1.93 16 32 H 0.04 1.91 7.86 -2.39 -0.02 1.90 16 33 H 0.42 11.79 7.71 -92.71 -0.71 11.07 16 34 H 0.17 3.55 7.99 -2.91 -0.02 3.53 16 35 H 0.23 0.77 8.06 -2.91 -0.02 0.75 16 Total: -1.00 -74.90 309.55 0.56 -74.34 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.40 Total: 12.15 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 4.70 Total: 13.61 kcal Atomic # 7 Polarization: -124.65 SS G_CDS: -5.19 Total: -129.83 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.07 Total: -24.74 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Atomic # 16 Polarization: 6.59 SS G_CDS: -1.31 Total: 5.28 kcal Total: -74.90 0.56 -74.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027961413.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.553 kcal (2) G-P(sol) polarization free energy of solvation -74.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds