Wall clock time and date at job start Tue Mar 31 2020 05:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86810 * 119.99958 * 2 1 4 4 H 1.48500 * 109.46900 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46823 * 299.99769 * 3 2 1 6 6 H 1.48497 * 109.46883 * 59.99790 * 3 2 1 7 7 C 1.38812 * 120.00384 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00448 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.47025 * 125.64514 * 359.97316 * 9 7 2 11 11 C 1.54322 * 107.26565 * 178.97458 * 10 9 7 12 12 C 1.55152 * 102.94543 * 337.80871 * 11 10 9 13 13 H 1.09007 * 111.00271 * 277.38923 * 12 11 10 14 14 C 1.53005 * 111.00171 * 153.57688 * 12 11 10 15 15 N 1.46505 * 109.46904 * 178.17978 * 14 12 11 16 16 C 1.34773 * 120.00095 * 180.02562 * 15 14 12 17 17 O 1.21693 * 119.99830 * 359.97438 * 16 15 14 18 18 C 1.46682 * 120.00215 * 179.72497 * 16 15 14 19 19 C 1.35656 * 126.13125 * 180.27463 * 18 16 15 20 20 N 1.30940 * 114.19060 * 180.02562 * 19 18 16 21 21 C 1.29431 * 117.36684 * 359.97438 * 20 19 18 22 22 S 1.70952 * 110.38501 * 359.72565 * 21 20 19 23 23 C 1.47466 * 125.62683 * 179.97438 * 9 7 2 24 24 H 0.96993 * 120.00469 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.88143 * 59.56142 * 10 9 7 26 26 H 1.08998 * 110.01289 * 298.46598 * 10 9 7 27 27 H 1.09006 * 110.71896 * 219.44555 * 11 10 9 28 28 H 1.08999 * 110.87437 * 96.24907 * 11 10 9 29 29 H 1.09003 * 109.46832 * 58.18231 * 14 12 11 30 30 H 1.08993 * 109.47355 * 298.18081 * 14 12 11 31 31 H 0.97000 * 119.99792 * 359.97438 * 15 14 12 32 32 H 1.08004 * 122.90796 * 0.03155 * 19 18 16 33 33 H 1.07995 * 124.80625 * 179.97438 * 21 20 19 34 34 H 1.08997 * 110.35182 * 85.25891 * 23 9 7 35 35 H 1.08990 * 110.40803 * 322.91199 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 -0.1374 -2.5328 0.0006 11 6 -0.4482 -4.0442 -0.0258 12 6 0.8521 -4.6563 -0.6103 13 1 0.8568 -4.5974 -1.6987 14 6 1.0372 -6.1009 -0.1413 15 7 2.2492 -6.6592 -0.7461 16 6 2.6148 -7.9277 -0.4749 17 8 1.9383 -8.6092 0.2726 18 6 3.8249 -8.4886 -1.0852 19 6 4.3033 -9.7451 -0.9043 20 7 5.4054 -9.9998 -1.5639 21 6 5.8962 -9.0489 -2.2921 22 16 4.9136 -7.6537 -2.1908 23 6 1.9343 -3.7313 0.0005 24 1 -0.4850 0.8399 -0.0004 25 1 -0.5575 -2.0525 -0.8832 26 1 -0.5567 -2.0837 0.9009 27 1 -1.2983 -4.2518 -0.6759 28 1 -0.6332 -4.4203 0.9804 29 1 0.1740 -6.6942 -0.4432 30 1 1.1303 -6.1214 0.9444 31 1 2.7881 -6.1160 -1.3423 32 1 3.8171 -10.4725 -0.2711 33 1 6.7965 -9.1273 -2.8833 34 1 2.1677 -4.0417 1.0190 35 1 2.8334 -3.7412 -0.6155 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028432290.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:17 Heat of formation + Delta-G solvation = 34.486752 kcal Electronic energy + Delta-G solvation = -19077.851454 eV Core-core repulsion = 16010.485046 eV Total energy + Delta-G solvation = -3067.366408 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.35346 -39.26437 -37.65173 -34.78030 -32.61654 -31.11407 -29.75885 -28.36091 -26.48371 -25.41301 -23.72926 -21.81284 -20.49309 -20.05780 -19.84405 -18.90694 -17.07283 -16.82253 -16.10766 -15.73359 -15.24682 -14.66984 -14.64708 -14.30783 -14.23017 -13.88306 -13.56021 -13.10034 -12.39686 -12.06819 -11.93564 -11.77437 -11.45124 -10.93087 -10.84072 -10.58037 -10.34587 -10.16195 -10.04596 -9.94483 -9.88602 -9.85549 -9.69507 -9.42831 -9.10215 -8.63451 -6.86778 -5.74427 -3.08217 -0.06237 0.86064 1.24807 2.19781 2.99311 3.01479 3.37422 3.42826 3.45418 3.93866 4.46085 4.62173 4.80208 4.96886 5.07306 5.16887 5.36480 5.50405 5.63070 5.73255 5.83016 5.96679 5.99625 6.26730 6.29765 6.44381 6.48803 6.62067 6.85299 7.19267 7.34318 7.53160 7.59670 7.79858 7.98021 8.22660 9.18910 9.79208 10.44949 11.37355 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025527 B = 0.003630 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.618556 B = 7710.842503 C = 8616.772090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.119 4.119 13 H 0.080 0.920 14 C 0.132 3.868 15 N -0.716 5.716 16 C 0.593 3.407 17 O -0.528 6.528 18 C -0.286 4.286 19 C 0.112 3.888 20 N -0.477 5.477 21 C 0.028 3.972 22 S 0.176 5.824 23 C 0.141 3.859 24 H 0.252 0.748 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.400 0.600 32 H 0.189 0.811 33 H 0.206 0.794 34 H 0.020 0.980 35 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.969 -16.041 -5.750 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.139 4.139 13 H 0.099 0.901 14 C 0.009 3.991 15 N -0.367 5.367 16 C 0.377 3.623 17 O -0.407 6.407 18 C -0.410 4.410 19 C -0.046 4.046 20 N -0.190 5.190 21 C -0.266 4.266 22 S 0.429 5.571 23 C 0.015 3.985 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.235 0.765 32 H 0.206 0.794 33 H 0.222 0.778 34 H 0.038 0.962 35 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.793 -15.766 -5.681 18.481 hybrid contribution 0.407 0.579 0.188 0.733 sum 8.200 -15.186 -5.493 18.112 Atomic orbital electron populations 1.69968 1.04890 1.24953 1.57059 1.24809 0.95726 0.97696 1.02208 0.86049 0.78703 0.83764 0.77268 1.20510 1.21739 1.21726 1.19104 0.90455 0.82413 1.43825 0.90411 1.44495 1.01732 0.99833 1.87198 1.21147 0.84296 0.88122 1.01192 1.22858 0.95292 0.99397 0.99753 1.22640 0.98856 0.91807 1.00610 0.90130 1.21502 0.85571 0.93689 0.98310 1.45999 1.28411 1.12773 1.49531 1.16704 0.82803 0.81879 0.80875 1.90846 1.53451 1.59754 1.36632 1.25911 1.04662 1.00280 1.10161 1.22261 0.90723 0.94378 0.97197 1.66273 1.11621 1.32048 1.09085 1.28840 1.04420 0.91915 1.01451 1.84173 1.16765 1.17339 1.38799 1.21586 0.93901 0.86223 0.96781 0.93777 0.93519 0.93832 0.91899 0.92111 0.91184 0.90866 0.76542 0.79429 0.77769 0.96241 0.94673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.76 10.31 55.49 0.57 -26.19 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.23 -6.30 10.28 -15.06 -0.15 -6.46 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.61 -15.12 3.40 -170.04 -0.58 -15.70 16 10 C 0.18 4.19 5.37 -3.06 -0.02 4.18 16 11 C -0.13 -2.37 6.42 -24.90 -0.16 -2.53 16 12 C -0.12 -1.91 3.07 -88.47 -0.27 -2.18 16 13 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 14 C 0.13 1.84 5.12 -4.04 -0.02 1.82 16 15 N -0.72 -9.10 5.44 -61.61 -0.34 -9.44 16 16 C 0.59 8.06 7.79 -12.85 -0.10 7.96 16 17 O -0.53 -8.80 16.87 5.20 0.09 -8.71 16 18 C -0.29 -3.20 6.48 -37.10 -0.24 -3.44 16 19 C 0.11 1.22 11.09 -18.86 -0.21 1.01 16 20 N -0.48 -4.92 10.51 -15.38 -0.16 -5.08 16 21 C 0.03 0.21 12.22 51.75 0.63 0.85 16 22 S 0.18 1.41 22.35 -107.50 -2.40 -0.99 16 23 C 0.14 2.76 6.56 -2.51 -0.02 2.75 16 24 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 26 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.09 8.03 -51.93 -0.42 0.67 16 31 H 0.40 4.47 7.62 -40.82 -0.31 4.16 16 32 H 0.19 1.89 8.06 -52.48 -0.42 1.47 16 33 H 0.21 0.77 8.06 -52.49 -0.42 0.34 16 34 H 0.02 0.39 7.96 -51.93 -0.41 -0.02 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 311.00 15.07 4.69 4.69 Total: -1.00 -32.66 311.00 -8.22 -40.88 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -4.41 Total: 0.14 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -0.65 Total: 3.64 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.50 Total: -56.41 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.40 Total: -0.99 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.66 -8.22 -40.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028432290.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.365 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds