Wall clock time and date at job start Tue Mar 31 2020 05:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00356 * 2 1 4 4 H 1.48503 * 109.47311 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47271 * 300.00620 * 3 2 1 6 6 H 1.48501 * 109.46665 * 60.00215 * 3 2 1 7 7 C 1.38813 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00306 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64618 * 359.69358 * 9 7 2 11 11 C 1.54327 * 107.26774 * 179.20447 * 10 9 7 12 12 C 1.55155 * 102.94571 * 337.80617 * 11 10 9 13 13 H 1.08997 * 111.00368 * 277.43464 * 12 11 10 14 14 C 1.52996 * 111.00532 * 153.57522 * 12 11 10 15 15 N 1.46497 * 109.47114 * 181.35298 * 14 12 11 16 16 C 1.34775 * 119.99944 * 180.02562 * 15 14 12 17 17 O 1.21574 * 120.00257 * 359.97438 * 16 15 14 18 18 C 1.47690 * 119.99999 * 179.97438 * 16 15 14 19 19 C 1.39487 * 122.10522 * 179.97438 * 18 16 15 20 20 C 1.35004 * 111.68750 * 179.97438 * 19 18 16 21 21 S 1.71763 * 105.44948 * 0.02562 * 20 19 18 22 22 N 1.30609 * 122.10670 * 359.71135 * 18 16 15 23 23 C 1.47426 * 125.64875 * 180.02562 * 9 7 2 24 24 H 0.97001 * 119.99407 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.88316 * 298.61939 * 10 9 7 26 26 H 1.09002 * 109.88101 * 59.78834 * 10 9 7 27 27 H 1.08999 * 110.71564 * 219.44370 * 11 10 9 28 28 H 1.09000 * 110.86856 * 96.24526 * 11 10 9 29 29 H 1.09002 * 109.47242 * 301.35140 * 14 12 11 30 30 H 1.09002 * 109.46968 * 61.35264 * 14 12 11 31 31 H 0.97000 * 119.99896 * 359.97438 * 15 14 12 32 32 H 1.07998 * 124.15815 * 359.95005 * 19 18 16 33 33 H 1.07994 * 127.27431 * 179.97438 * 20 19 18 34 34 H 1.09002 * 110.36518 * 322.70049 * 23 9 7 35 35 H 1.08995 * 110.36673 * 84.91158 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 0.0064 11 6 -0.4487 -4.0441 -0.0169 12 6 0.8490 -4.6570 -0.6067 13 1 0.8490 -4.5986 -1.6951 14 6 1.0361 -6.1010 -0.1371 15 7 2.2848 -6.6352 -0.6863 16 6 2.6586 -7.8990 -0.4047 17 8 1.9599 -8.5957 0.3056 18 6 3.9172 -8.4378 -0.9588 19 6 4.3463 -9.7386 -0.6955 20 6 5.5193 -10.0102 -1.3060 21 16 5.9413 -8.5729 -2.1465 22 7 4.6959 -7.7278 -1.7304 23 6 1.9333 -3.7312 -0.0005 24 1 -0.4849 0.8401 -0.0004 25 1 -0.5503 -2.0832 0.9095 26 1 -0.5617 -2.0533 -0.8759 27 1 -1.3017 -4.2523 -0.6628 28 1 -0.6290 -4.4190 0.9906 29 1 1.0780 -6.1265 0.9518 30 1 0.1986 -6.7069 -0.4828 31 1 2.8421 -6.0795 -1.2533 32 1 3.8067 -10.4419 -0.0786 33 1 6.0754 -10.9354 -1.2723 34 1 2.8303 -3.7416 -0.6198 35 1 2.1723 -4.0394 1.0172 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028621983.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:24 Heat of formation + Delta-G solvation = 30.797527 kcal Electronic energy + Delta-G solvation = -19148.834793 eV Core-core repulsion = 16081.308408 eV Total energy + Delta-G solvation = -3067.526385 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.53173 -38.57879 -37.50144 -34.71796 -32.57790 -31.75791 -29.85434 -28.44090 -26.77911 -25.28778 -23.54840 -21.72127 -20.46382 -19.93136 -19.65674 -18.54552 -17.81166 -16.74957 -15.96172 -15.68602 -15.13849 -14.68403 -14.59636 -14.11247 -13.71338 -13.56507 -13.38653 -12.98682 -12.32809 -11.98712 -11.74252 -11.53955 -11.47848 -11.36486 -10.88530 -10.80137 -10.44047 -10.17353 -10.15647 -10.01520 -9.88339 -9.79975 -9.64355 -9.18480 -8.90692 -8.59078 -6.81601 -5.70030 -3.03377 0.32405 1.16828 1.53417 1.56047 3.14665 3.17366 3.40591 3.45987 3.48567 4.44369 4.50643 4.74582 5.01934 5.11352 5.25188 5.25647 5.43518 5.50933 5.55231 5.69011 5.90524 6.00463 6.06389 6.08249 6.35683 6.42503 6.52876 6.54799 6.70009 6.92914 7.51961 7.57858 7.64771 7.84224 8.12621 8.27448 9.23688 9.83972 10.50137 11.41852 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.024628 B = 0.003554 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.644102 B = 7877.150232 C = 8846.385762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.118 4.118 13 H 0.080 0.920 14 C 0.131 3.869 15 N -0.703 5.703 16 C 0.588 3.412 17 O -0.535 6.535 18 C 0.051 3.949 19 C -0.134 4.134 20 C -0.287 4.287 21 S 0.468 5.532 22 N -0.517 5.517 23 C 0.142 3.858 24 H 0.251 0.749 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.411 0.589 32 H 0.172 0.828 33 H 0.186 0.814 34 H 0.036 0.964 35 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.574 -20.000 -4.514 22.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.173 4.173 12 C -0.138 4.138 13 H 0.099 0.901 14 C 0.008 3.992 15 N -0.354 5.354 16 C 0.368 3.632 17 O -0.411 6.411 18 C -0.124 4.124 19 C -0.167 4.167 20 C -0.435 4.435 21 S 0.623 5.377 22 N -0.352 5.352 23 C 0.015 3.985 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.247 0.753 32 H 0.189 0.811 33 H 0.204 0.796 34 H 0.054 0.946 35 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 10.015 -18.791 -5.207 21.920 hybrid contribution -0.391 0.004 0.901 0.982 sum 9.624 -18.786 -4.306 21.543 Atomic orbital electron populations 1.69978 1.04873 1.24873 1.57231 1.24807 0.95736 0.97675 1.02327 0.86042 0.78707 0.83779 0.77230 1.20526 1.21761 1.21756 1.19114 0.90463 0.82440 1.43583 0.90436 1.44496 1.01757 0.99871 1.87167 1.21150 0.84318 0.88151 1.01123 1.22861 0.95371 0.99391 0.99683 1.22621 0.98698 0.91852 1.00630 0.90124 1.21496 0.84804 0.93989 0.98914 1.45938 1.24998 1.13095 1.51379 1.17224 0.83286 0.82125 0.80526 1.90797 1.53551 1.58773 1.38010 1.21257 0.98125 0.92688 1.00318 1.21424 0.96633 0.96065 1.02561 1.27218 1.02019 1.07974 1.06334 1.80567 1.20358 0.95617 1.41166 1.72291 1.09378 1.34515 1.19007 1.21568 0.93988 0.86130 0.96770 0.93829 0.93889 0.93508 0.91935 0.92149 0.90995 0.91303 0.75335 0.81051 0.79622 0.94595 0.96312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.35 10.31 55.49 0.57 -26.77 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.23 -6.44 10.28 -15.06 -0.15 -6.60 16 8 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 9 N -0.61 -15.70 3.39 -170.05 -0.58 -16.27 16 10 C 0.18 4.33 5.37 -3.06 -0.02 4.32 16 11 C -0.13 -2.48 6.42 -24.90 -0.16 -2.64 16 12 C -0.12 -2.03 3.11 -88.46 -0.27 -2.30 16 13 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 14 C 0.13 1.97 5.12 -4.05 -0.02 1.95 16 15 N -0.70 -10.16 5.40 -61.30 -0.33 -10.49 16 16 C 0.59 8.73 7.81 -12.40 -0.10 8.64 16 17 O -0.53 -9.18 16.66 5.30 0.09 -9.09 16 18 C 0.05 0.64 6.67 -84.06 -0.56 0.08 16 19 C -0.13 -1.34 9.98 -40.27 -0.40 -1.74 16 20 C -0.29 -2.03 11.41 29.58 0.34 -1.69 16 21 S 0.47 3.62 23.20 -107.50 -2.49 1.13 16 22 N -0.52 -6.09 10.71 24.86 0.27 -5.82 16 23 C 0.14 2.94 6.41 -2.52 -0.02 2.92 16 24 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 26 H 0.05 1.26 7.38 -51.93 -0.38 0.88 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 29 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.41 5.72 7.80 -40.82 -0.32 5.40 16 32 H 0.17 1.58 7.99 -52.49 -0.42 1.16 16 33 H 0.19 0.70 8.06 -52.49 -0.42 0.27 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.02 0.40 8.01 -51.93 -0.42 -0.01 16 LS Contribution 310.19 15.07 4.67 4.67 Total: -1.00 -32.97 310.19 -8.71 -41.68 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -4.42 Total: 1.10 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -1.46 Total: 2.58 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -0.07 Total: -59.36 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -2.49 Total: 1.13 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.97 -8.71 -41.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028621983.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.474 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds