Wall clock time and date at job start Tue Mar 31 2020 05:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00097 * 2 1 4 4 H 1.48492 * 109.47216 * 270.00586 * 3 2 1 5 5 H 1.48499 * 109.46792 * 30.00355 * 3 2 1 6 6 H 1.48503 * 109.47146 * 149.99922 * 3 2 1 7 7 C 1.38811 * 120.00405 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00566 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00015 * 359.97438 * 7 2 1 10 10 C 1.47430 * 125.64516 * 359.97438 * 9 7 2 11 11 C 1.54908 * 104.83134 * 155.89947 * 10 9 7 12 12 C 1.55164 * 101.57931 * 37.01126 * 11 10 9 13 13 H 1.08997 * 110.71638 * 83.03674 * 12 11 10 14 14 C 1.53000 * 110.71750 * 206.13010 * 12 11 10 15 15 N 1.46499 * 109.46840 * 182.55756 * 14 12 11 16 16 C 1.34779 * 119.99872 * 180.02562 * 15 14 12 17 17 O 1.21618 * 120.00191 * 0.02562 * 16 15 14 18 18 C 1.47263 * 119.99956 * 180.02562 * 16 15 14 19 19 N 1.30559 * 125.53890 * 359.69540 * 18 16 15 20 20 C 1.30709 * 115.90056 * 179.78291 * 19 18 16 21 21 C 1.34233 * 115.78178 * 0.51414 * 20 19 18 22 22 S 1.71068 * 109.09394 * 359.72808 * 21 20 19 23 23 C 1.47314 * 125.61988 * 180.19498 * 9 7 2 24 24 H 0.96991 * 120.00555 * 359.97438 * 1 2 3 25 25 H 1.09003 * 110.36730 * 37.06886 * 10 9 7 26 26 H 1.08998 * 110.46193 * 274.78693 * 10 9 7 27 27 H 1.08995 * 111.00751 * 278.93663 * 11 10 9 28 28 H 1.09003 * 111.03535 * 155.09344 * 11 10 9 29 29 H 1.09002 * 109.47398 * 302.56082 * 14 12 11 30 30 H 1.09001 * 109.47194 * 62.56262 * 14 12 11 31 31 H 0.97000 * 120.00420 * 0.02562 * 15 14 12 32 32 H 1.07999 * 122.10255 * 180.21849 * 20 19 18 33 33 H 1.08007 * 125.44677 * 179.72476 * 21 20 19 34 34 H 1.09002 * 110.06317 * 61.68494 * 23 9 7 35 35 H 1.08996 * 109.85306 * 300.43053 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1415 -2.5332 0.0005 11 6 -0.4020 -3.9323 -0.6114 12 6 0.7785 -4.7524 -0.0272 13 1 0.5454 -5.1007 0.9790 14 6 1.1226 -5.9313 -0.9398 15 7 2.1975 -6.7206 -0.3336 16 6 2.6680 -7.8150 -0.9642 17 8 2.2004 -8.1469 -2.0367 18 6 3.7481 -8.6088 -0.3545 19 7 4.3303 -8.3493 0.7849 20 6 5.2673 -9.1841 1.1505 21 6 5.5147 -10.1929 0.3003 22 16 4.4697 -10.0580 -1.0474 23 6 1.9338 -3.7298 0.0030 24 1 -0.4850 0.8399 0.0004 25 1 -0.5997 -1.7589 -0.6147 26 1 -0.5283 -2.4864 1.0185 27 1 -0.3531 -3.8980 -1.6997 28 1 -1.3591 -4.3332 -0.2777 29 1 0.2409 -6.5585 -1.0713 30 1 1.4497 -5.5565 -1.9097 31 1 2.5707 -6.4558 0.5217 32 1 5.8114 -9.0668 2.0761 33 1 6.2551 -10.9660 0.4441 34 1 2.5282 -3.8686 0.9061 35 1 2.5619 -3.8539 -0.8792 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028888106.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:20 Heat of formation + Delta-G solvation = 36.908475 kcal Electronic energy + Delta-G solvation = -19078.149275 eV Core-core repulsion = 16010.887881 eV Total energy + Delta-G solvation = -3067.261394 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.32614 -39.18256 -37.60730 -34.72543 -32.56869 -31.04165 -29.69862 -28.28805 -26.65481 -25.34029 -23.57905 -22.05021 -20.47311 -19.84020 -19.64432 -18.64056 -17.19943 -16.76165 -16.00468 -15.70965 -15.40180 -14.92987 -14.63016 -14.09527 -13.92303 -13.63149 -13.53379 -12.81450 -12.49145 -11.83858 -11.77593 -11.70289 -11.49649 -10.94334 -10.79254 -10.67295 -10.39023 -10.16545 -10.05820 -10.01249 -9.96862 -9.77349 -9.51130 -9.30030 -8.99714 -8.63610 -6.81887 -5.63951 -3.05441 -0.04077 0.85144 1.39739 2.11214 3.05123 3.11312 3.41347 3.46188 3.48178 3.94168 4.50039 4.74983 4.78687 5.01903 5.09915 5.24989 5.41037 5.53511 5.67327 5.71638 5.87853 6.03823 6.09286 6.33208 6.36102 6.57604 6.59079 6.72594 6.91878 7.12565 7.45329 7.52746 7.64168 7.86815 8.01784 8.37815 9.23791 9.84451 10.49394 11.40119 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.029164 B = 0.003346 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.869432 B = 8366.389059 C = 8963.934769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.134 4.134 12 C -0.115 4.115 13 H 0.078 0.922 14 C 0.131 3.869 15 N -0.695 5.695 16 C 0.594 3.406 17 O -0.532 6.532 18 C -0.014 4.014 19 N -0.425 5.425 20 C 0.030 3.970 21 C -0.284 4.284 22 S 0.245 5.755 23 C 0.140 3.860 24 H 0.252 0.748 25 H 0.107 0.893 26 H 0.012 0.988 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.413 0.587 32 H 0.179 0.821 33 H 0.184 0.816 34 H 0.020 0.980 35 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.365 -20.894 0.671 22.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.135 4.135 13 H 0.096 0.904 14 C 0.008 3.992 15 N -0.346 5.346 16 C 0.375 3.625 17 O -0.409 6.409 18 C -0.289 4.289 19 N -0.143 5.143 20 C -0.127 4.127 21 C -0.425 4.425 22 S 0.500 5.500 23 C 0.014 3.986 24 H 0.063 0.937 25 H 0.125 0.875 26 H 0.030 0.970 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.249 0.751 32 H 0.196 0.804 33 H 0.201 0.799 34 H 0.038 0.962 35 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 6.623 -20.973 -0.741 22.007 hybrid contribution 1.387 0.964 1.536 2.283 sum 8.010 -20.009 0.796 21.568 Atomic orbital electron populations 1.69787 1.04881 1.24754 1.57734 1.24783 0.95735 0.97711 1.02499 0.86069 0.78514 0.83326 0.77577 1.21592 1.21660 1.20760 1.19088 0.90518 0.82503 1.42933 0.90538 1.44579 1.01955 0.99697 1.86869 1.21930 0.84654 0.92487 0.98213 1.23009 0.95430 0.98571 1.00350 1.22460 0.98436 0.93875 0.98686 0.90398 1.21618 0.88812 0.91654 0.97129 1.45871 1.37961 1.25934 1.24871 1.16722 0.80768 0.80717 0.84292 1.90859 1.59211 1.70049 1.20780 1.27819 1.04110 1.00723 0.96259 1.66830 1.07690 1.27576 1.12168 1.21757 0.97224 0.91456 1.02292 1.26927 1.08283 1.06568 1.00723 1.84065 1.25498 1.21793 1.18690 1.21394 0.93424 0.85911 0.97874 0.93741 0.87499 0.97008 0.91759 0.92039 0.91071 0.90673 0.75143 0.80450 0.79874 0.96173 0.95711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.99 10.09 55.49 0.56 -26.43 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.22 -6.25 10.28 -15.06 -0.15 -6.41 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.57 3.40 -169.84 -0.58 -16.15 16 10 C 0.15 3.67 5.89 -2.53 -0.01 3.65 16 11 C -0.13 -2.47 6.54 -24.58 -0.16 -2.63 16 12 C -0.12 -1.93 2.98 -88.78 -0.26 -2.19 16 13 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 14 C 0.13 1.94 5.00 -4.04 -0.02 1.92 16 15 N -0.70 -9.72 5.43 -61.43 -0.33 -10.05 16 16 C 0.59 8.63 7.81 -12.59 -0.10 8.53 16 17 O -0.53 -8.97 16.94 5.26 0.09 -8.88 16 18 C -0.01 -0.18 7.46 -14.43 -0.11 -0.28 16 19 N -0.42 -5.04 10.24 -11.50 -0.12 -5.16 16 20 C 0.03 0.27 11.24 -19.44 -0.22 0.05 16 21 C -0.28 -2.07 11.09 29.32 0.33 -1.75 16 22 S 0.25 2.26 23.03 -107.50 -2.48 -0.22 16 23 C 0.14 2.89 6.66 -2.91 -0.02 2.87 16 24 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.11 2.91 5.87 -51.93 -0.31 2.60 16 26 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.20 8.00 -51.93 -0.42 0.78 16 31 H 0.41 5.44 8.06 -40.82 -0.33 5.11 16 32 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.18 0.73 8.06 -52.48 -0.42 0.31 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.02 0.52 7.73 -51.93 -0.40 0.12 16 LS Contribution 311.10 15.07 4.69 4.69 Total: -1.00 -32.19 311.10 -8.39 -40.59 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -4.37 Total: 1.09 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -0.83 Total: 3.32 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -0.47 Total: -57.79 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.48 Total: -0.22 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.19 -8.39 -40.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028888106.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.497 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds