Wall clock time and date at job start Tue Mar 31 2020 05:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29021 * 124.91431 * 2 1 4 4 C 1.31784 * 117.12480 * 180.02562 * 3 2 1 5 5 C 1.50702 * 122.75192 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46623 * 305.02607 * 5 4 3 7 7 O 1.21272 * 120.00493 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99751 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00376 * 179.97438 * 8 6 5 10 10 C 1.53496 * 114.20904 * 155.00161 * 9 8 6 11 11 N 1.47062 * 87.98485 * 87.72044 * 10 9 8 12 12 C 1.36939 * 136.05593 * 207.08750 * 11 10 9 13 13 H 1.08008 * 119.99868 * 7.82597 * 12 11 10 14 14 C 1.38808 * 120.00203 * 187.82575 * 12 11 10 15 15 N 1.31618 * 119.99998 * 195.17052 * 14 12 11 16 16 Si 1.86797 * 119.99840 * 15.16580 * 14 12 11 17 17 H 1.48503 * 109.47450 * 270.00422 * 16 14 12 18 18 H 1.48503 * 109.47360 * 30.00092 * 16 14 12 19 19 H 1.48498 * 109.47360 * 150.00270 * 16 14 12 20 20 C 1.47059 * 87.88616 * 27.34176 * 11 10 9 21 21 C 1.33639 * 114.50143 * 0.24157 * 4 3 2 22 22 S 1.70975 * 124.91608 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47378 * 89.99866 * 1 2 3 24 24 H 1.09001 * 109.46812 * 209.99020 * 1 2 3 25 25 H 1.08994 * 109.47199 * 329.99291 * 1 2 3 26 26 H 1.08998 * 109.47168 * 185.02971 * 5 4 3 27 27 H 1.08997 * 109.46771 * 65.02404 * 5 4 3 28 28 H 0.97007 * 119.99743 * 359.97438 * 8 6 5 29 29 H 1.09003 * 113.27537 * 21.93512 * 9 8 6 30 30 H 1.09008 * 113.46447 * 332.93478 * 10 9 8 31 31 H 1.08996 * 113.51824 * 202.51288 * 10 9 8 32 32 H 0.96995 * 120.00365 * 354.90363 * 15 14 12 33 33 H 1.08997 * 113.47135 * 87.43718 * 20 11 10 34 34 H 1.09007 * 113.47198 * 217.88025 * 20 11 10 35 35 H 1.07997 * 126.04123 * 179.77320 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 4.5307 2.0246 -0.0012 6 6 4.2369 2.9361 -1.1648 7 8 3.3220 2.6812 -1.9189 8 7 4.9904 4.0353 -1.3667 9 6 4.7052 4.9212 -2.4981 10 6 5.1760 6.3684 -2.2986 11 7 6.4798 5.9650 -2.8465 12 6 7.7766 6.3853 -2.7165 13 1 8.0309 7.1321 -1.9789 14 6 8.7643 5.8514 -3.5327 15 7 10.0332 6.0174 -3.2249 16 14 8.2926 4.8974 -5.0679 17 1 8.1421 3.4591 -4.7302 18 1 7.0073 5.4182 -5.5990 19 1 9.3533 5.0562 -6.0949 20 6 5.7772 4.9159 -3.6004 21 6 3.9355 -0.4006 -0.0061 22 16 2.4856 -1.4020 -0.0006 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8901 0.5137 25 1 -0.3633 0.8899 0.5139 26 1 5.5448 1.6353 -0.0916 27 1 4.4375 2.5829 0.9303 28 1 5.7215 4.2397 -0.7628 29 1 3.6845 4.8303 -2.8697 30 1 5.2195 6.6703 -1.2520 31 1 4.6466 7.0880 -2.9230 32 1 10.2804 6.5742 -2.4702 33 1 5.4058 5.2518 -4.5685 34 1 6.3328 3.9802 -3.6631 35 1 4.9545 -0.7580 -0.0110 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031358829.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:01 Heat of formation + Delta-G solvation = 71.477576 kcal Electronic energy + Delta-G solvation = -19246.189874 eV Core-core repulsion = 16180.427509 eV Total energy + Delta-G solvation = -3065.762365 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.33841 -39.33341 -37.76348 -33.40904 -33.16907 -32.11744 -29.83907 -28.16721 -27.46592 -25.28901 -23.48723 -22.41099 -20.63816 -19.73900 -19.44681 -17.85240 -17.47158 -16.83343 -15.87629 -15.37085 -15.08633 -14.98817 -14.50190 -14.10488 -13.81598 -13.63924 -13.26947 -13.21158 -13.05381 -12.67593 -12.35095 -12.29280 -11.86642 -11.53303 -11.34384 -10.92140 -10.52151 -10.15718 -9.76539 -9.71133 -9.61226 -9.45021 -9.25134 -8.82114 -8.74231 -8.45512 -7.22021 -6.33003 -3.25931 0.60958 1.25000 1.59785 2.66959 2.91956 3.42504 3.47026 3.56013 3.62656 3.91978 4.57645 4.67293 4.76691 4.96295 5.04932 5.11458 5.13142 5.24669 5.26662 5.33695 5.37359 5.61186 5.64871 5.92110 5.94215 6.04369 6.22242 6.28403 6.38866 6.48126 7.04239 7.10092 7.71386 7.90244 8.20804 8.55591 8.94372 9.47838 10.34684 11.16669 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.029713 B = 0.003739 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.113702 B = 7487.786398 C = 7795.371871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.051 3.949 3 N -0.445 5.445 4 C 0.094 3.906 5 C -0.069 4.069 6 C 0.518 3.482 7 O -0.532 6.532 8 N -0.697 5.697 9 C 0.103 3.897 10 C 0.109 3.891 11 N -0.624 5.624 12 C -0.306 4.306 13 H 0.082 0.918 14 C -0.022 4.022 15 N -0.932 5.932 16 Si 1.062 2.938 17 H -0.294 1.294 18 H -0.282 1.282 19 H -0.296 1.296 20 C 0.087 3.913 21 C -0.257 4.257 22 S 0.101 5.899 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.406 0.594 29 H 0.101 0.899 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.261 0.739 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.745 -13.860 9.024 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.228 4.228 3 N -0.159 5.159 4 C -0.038 4.038 5 C -0.112 4.112 6 C 0.303 3.697 7 O -0.408 6.408 8 N -0.348 5.348 9 C -0.004 4.004 10 C -0.018 4.018 11 N -0.353 5.353 12 C -0.433 4.433 13 H 0.100 0.900 14 C -0.221 4.221 15 N -0.574 5.574 16 Si 0.893 3.107 17 H -0.222 1.222 18 H -0.208 1.208 19 H -0.223 1.223 20 C -0.040 4.040 21 C -0.396 4.396 22 S 0.355 5.645 23 H 0.104 0.896 24 H 0.097 0.903 25 H 0.107 0.893 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.241 0.759 29 H 0.119 0.881 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -16.997 -15.395 7.257 24.053 hybrid contribution 0.612 1.866 1.333 2.374 sum -16.384 -13.528 8.591 22.919 Atomic orbital electron populations 1.20425 0.85282 1.03936 1.03970 1.27020 1.01757 0.90585 1.03475 1.65995 1.04311 1.31158 1.14479 1.19572 0.89953 0.93088 1.01207 1.20254 0.98078 0.93489 0.99371 1.20188 0.82135 0.81333 0.86013 1.90695 1.30268 1.72717 1.47091 1.45462 1.34603 1.24652 1.30062 1.22383 0.98606 0.91313 0.88116 1.22749 0.87529 0.93175 0.98392 1.46384 1.01188 1.35387 1.52300 1.20140 0.80170 1.24991 1.17958 0.90043 1.25744 0.92773 1.01381 1.02222 1.70909 1.15586 1.39238 1.31634 0.83775 0.74631 0.75640 0.76615 1.22224 1.20829 1.22308 1.23193 0.92196 0.93663 0.94933 1.26759 1.03199 0.95625 1.14024 1.83832 0.98092 1.13304 1.69253 0.89551 0.90295 0.89289 0.87068 0.87143 0.75863 0.88071 0.93262 0.93411 0.92871 0.92870 0.92798 0.80479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.46 36.01 0.38 -0.23 16 2 C 0.05 0.59 7.39 -13.46 -0.10 0.49 16 3 N -0.45 -6.50 9.68 -8.06 -0.08 -6.58 16 4 C 0.09 1.26 5.64 -84.22 -0.47 0.79 16 5 C -0.07 -0.85 6.19 -29.03 -0.18 -1.03 16 6 C 0.52 8.44 7.80 -10.98 -0.09 8.35 16 7 O -0.53 -10.55 15.04 5.56 0.08 -10.47 16 8 N -0.70 -11.50 5.40 -53.49 -0.29 -11.78 16 9 C 0.10 1.87 4.61 -67.68 -0.31 1.56 16 10 C 0.11 2.08 8.44 -8.52 -0.07 2.01 16 11 N -0.62 -14.93 3.62 -184.65 -0.67 -15.60 16 12 C -0.31 -8.61 11.03 -15.06 -0.17 -8.78 16 13 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 14 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 15 N -0.93 -29.07 13.70 55.49 0.76 -28.31 16 16 Si 1.06 26.88 25.50 -169.99 -4.34 22.55 16 17 H -0.29 -7.25 6.97 56.52 0.39 -6.85 16 18 H -0.28 -6.69 5.66 56.52 0.32 -6.37 16 19 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 20 C 0.09 1.87 5.44 -8.39 -0.05 1.83 16 21 C -0.26 -2.88 11.07 29.12 0.32 -2.55 16 22 S 0.10 0.99 23.18 -107.50 -2.49 -1.50 16 23 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.11 1.10 8.03 -51.93 -0.42 0.68 16 27 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.41 6.28 8.76 -40.82 -0.36 5.93 16 29 H 0.10 1.79 7.45 -51.93 -0.39 1.40 16 30 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.26 8.02 8.73 -40.82 -0.36 7.66 16 33 H 0.05 1.13 7.02 -51.93 -0.36 0.76 16 34 H 0.05 1.23 6.22 -51.93 -0.32 0.90 16 35 H 0.18 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 310.62 15.07 4.68 4.68 Total: -1.00 -35.53 310.62 -7.64 -43.17 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -4.47 Total: 2.15 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -0.83 Total: 1.70 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -0.28 Total: -62.28 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 26.88 SS G_CDS: -4.34 Total: 22.55 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.49 Total: -1.50 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.53 -7.64 -43.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031358829.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.647 kcal (2) G-P(sol) polarization free energy of solvation -35.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds