Wall clock time and date at job start Tue Mar 31 2020 05:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.29514 * 121.53425 * 2 1 4 4 S 1.69475 * 107.84764 * 180.21417 * 3 2 1 5 5 C 1.72026 * 96.02423 * 359.74567 * 4 3 2 6 6 C 1.50694 * 127.31696 * 179.97438 * 5 4 3 7 7 C 1.37899 * 105.36488 * 359.97438 * 5 4 3 8 8 C 1.47336 * 123.08609 * 179.97438 * 7 5 4 9 9 O 1.21612 * 120.00303 * 90.00284 * 8 7 5 10 10 N 1.34779 * 120.00093 * 270.00311 * 8 7 5 11 11 C 1.46501 * 120.00376 * 179.97438 * 10 8 7 12 12 C 1.53496 * 114.20904 * 155.00161 * 11 10 8 13 13 N 1.47062 * 87.98485 * 87.72044 * 12 11 10 14 14 C 1.36939 * 136.05593 * 207.08750 * 13 12 11 15 15 H 1.08008 * 119.99868 * 7.82597 * 14 13 12 16 16 C 1.38808 * 120.00203 * 187.82575 * 14 13 12 17 17 N 1.31618 * 119.99998 * 195.17052 * 16 14 13 18 18 Si 1.86797 * 119.99840 * 15.16580 * 16 14 13 19 19 H 1.48503 * 109.47450 * 270.00422 * 18 16 14 20 20 H 1.48503 * 109.47360 * 30.00092 * 18 16 14 21 21 H 1.48498 * 109.47360 * 150.00270 * 18 16 14 22 22 C 1.47059 * 87.88616 * 27.34176 * 13 12 11 23 23 H 1.08995 * 109.47039 * 270.25270 * 1 2 3 24 24 H 1.09007 * 109.46703 * 30.25343 * 1 2 3 25 25 H 1.08995 * 109.46870 * 150.24661 * 1 2 3 26 26 H 1.09003 * 109.47355 * 270.02543 * 6 5 4 27 27 H 1.09008 * 109.47139 * 30.02457 * 6 5 4 28 28 H 1.09003 * 109.47158 * 150.02514 * 6 5 4 29 29 H 0.97003 * 119.99699 * 0.02562 * 10 8 7 30 30 H 1.09003 * 113.27537 * 21.93512 * 11 10 8 31 31 H 1.09008 * 113.46447 * 332.93478 * 12 11 10 32 32 H 1.09003 * 113.46673 * 202.50377 * 12 11 10 33 33 H 0.96995 * 120.00365 * 354.90363 * 17 16 14 34 34 H 1.08997 * 113.47135 * 87.43718 * 22 13 12 35 35 H 1.09007 * 113.47198 * 217.88025 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1845 1.1039 0.0000 4 16 3.8311 0.7029 -0.0060 5 6 3.6017 -1.0020 -0.0010 6 6 4.6677 -2.0672 -0.0036 7 6 2.2352 -1.1868 0.0058 8 6 1.6036 -2.5179 0.0112 9 8 1.3479 -3.0654 1.0666 10 7 1.3093 -3.1290 -1.1535 11 6 0.6818 -4.4528 -1.1481 12 6 -0.1286 -4.7704 -2.4124 13 7 1.1120 -5.2784 -3.0172 14 6 1.6082 -5.4095 -4.2867 15 1 1.0774 -4.9759 -5.1215 16 6 2.7933 -6.0998 -4.5008 17 7 3.4269 -5.9794 -5.6482 18 14 3.4890 -7.1993 -3.1605 19 1 4.3969 -6.4074 -2.2922 20 1 2.3769 -7.7481 -2.3436 21 1 4.2463 -8.3164 -3.7800 22 6 1.5824 -5.5894 -1.6590 23 1 -0.3633 0.0045 1.0276 24 1 -0.3633 0.8878 -0.5178 25 1 -0.3633 -0.8922 -0.5100 26 1 4.9202 -2.3261 -1.0319 27 1 5.5561 -1.6934 0.5057 28 1 4.2979 -2.9525 0.5136 29 1 1.5136 -2.6925 -1.9953 30 1 0.1638 -4.6802 -0.2163 31 1 -0.5226 -3.8839 -2.9095 32 1 -0.8849 -5.5406 -2.2612 33 1 3.0296 -5.4683 -6.3704 34 1 1.2772 -6.5756 -1.3091 35 1 2.6462 -5.4008 -1.5142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031447370.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:11 Heat of formation + Delta-G solvation = 61.156777 kcal Electronic energy + Delta-G solvation = -19916.573517 eV Core-core repulsion = 16850.363608 eV Total energy + Delta-G solvation = -3066.209909 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.39584 -38.90333 -37.56670 -33.60193 -33.29183 -32.15373 -29.86748 -28.50171 -27.63953 -25.37377 -23.76918 -22.30624 -21.29820 -19.56669 -19.28260 -18.29880 -17.53283 -16.78822 -16.04691 -15.18323 -14.97598 -14.55474 -14.35943 -13.95580 -13.80018 -13.52390 -13.31037 -13.23071 -13.19317 -12.69876 -12.40505 -12.30454 -12.07127 -11.46301 -11.29972 -11.01052 -10.84984 -10.58954 -10.24592 -9.90377 -9.82626 -9.47299 -9.30703 -8.83171 -8.76842 -8.61584 -7.27672 -6.37183 -3.30652 0.43288 1.21213 1.60434 2.03566 2.62035 3.36349 3.37350 3.45578 3.57832 4.20670 4.52875 4.68139 4.75864 4.84240 5.02235 5.09199 5.14281 5.32462 5.35746 5.37201 5.39679 5.59997 5.81053 5.82712 5.83754 5.88772 6.14198 6.17795 6.29356 6.36287 6.45092 6.88950 7.03257 7.70288 8.16737 8.29925 8.89827 9.43121 10.28772 11.12320 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.020352 B = 0.005401 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.469281 B = 5182.654200 C = 5652.903676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.155 3.845 3 N -0.470 5.470 4 S 0.274 5.726 5 C -0.126 4.126 6 C -0.091 4.091 7 C -0.217 4.217 8 C 0.592 3.408 9 O -0.535 6.535 10 N -0.683 5.683 11 C 0.098 3.902 12 C 0.109 3.891 13 N -0.623 5.623 14 C -0.307 4.307 15 H 0.082 0.918 16 C -0.021 4.021 17 N -0.930 5.930 18 Si 1.061 2.939 19 H -0.294 1.294 20 H -0.282 1.282 21 H -0.295 1.295 22 C 0.088 3.912 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.409 0.591 30 H 0.105 0.895 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.261 0.739 34 H 0.056 0.944 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.024 11.017 12.229 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.023 4.023 3 N -0.291 5.291 4 S 0.430 5.570 5 C -0.256 4.256 6 C -0.150 4.150 7 C -0.237 4.237 8 C 0.374 3.626 9 O -0.412 6.412 10 N -0.332 5.332 11 C -0.009 4.009 12 C -0.018 4.018 13 N -0.352 5.352 14 C -0.434 4.434 15 H 0.100 0.900 16 C -0.221 4.221 17 N -0.572 5.572 18 Si 0.893 3.107 19 H -0.222 1.222 20 H -0.208 1.208 21 H -0.223 1.223 22 C -0.039 4.039 23 H 0.106 0.894 24 H 0.102 0.898 25 H 0.101 0.899 26 H 0.114 0.886 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.245 0.755 30 H 0.123 0.877 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.043 11.720 13.089 17.569 hybrid contribution -2.022 -0.655 -0.952 2.329 sum -1.979 11.065 12.136 16.542 Atomic orbital electron populations 1.20646 0.86093 1.04221 1.04087 1.21257 0.98918 0.86890 0.95215 1.76355 1.00237 1.25946 1.26564 1.83943 1.10465 0.95368 1.67217 1.26105 0.97297 1.02576 0.99656 1.20482 0.94671 0.95263 1.04548 1.20201 0.92574 0.95894 1.15016 1.17293 0.77726 0.83438 0.84164 1.90790 1.53394 1.65971 1.31053 1.45532 1.60711 1.18631 1.08327 1.22515 0.96200 0.82793 0.99370 1.22746 0.91244 0.97431 0.90342 1.46384 1.13838 1.73834 1.01128 1.20132 1.07866 1.33441 0.81913 0.90037 1.25747 0.94394 0.99699 1.02239 1.70904 1.37165 1.44477 1.04652 0.83786 0.75614 0.76902 0.74417 1.22211 1.20798 1.22270 1.23189 0.98505 0.95928 0.86271 0.89407 0.89763 0.89923 0.88622 0.89864 0.89501 0.75548 0.87701 0.93175 0.93177 0.92831 0.92629 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 9.96 36.01 0.36 -0.58 16 2 C 0.16 2.06 6.75 -83.19 -0.56 1.50 16 3 N -0.47 -6.37 11.97 32.50 0.39 -5.98 16 4 S 0.27 3.20 23.69 -107.50 -2.55 0.66 16 5 C -0.13 -1.61 6.67 -34.44 -0.23 -1.84 16 6 C -0.09 -1.02 10.19 36.00 0.37 -0.66 16 7 C -0.22 -3.07 5.61 -105.95 -0.59 -3.67 16 8 C 0.59 9.34 5.77 -12.56 -0.07 9.26 16 9 O -0.54 -9.85 16.70 5.27 0.09 -9.76 16 10 N -0.68 -10.80 5.40 -54.59 -0.29 -11.09 16 11 C 0.10 1.64 4.61 -67.68 -0.31 1.33 16 12 C 0.11 1.96 8.44 -8.52 -0.07 1.89 16 13 N -0.62 -14.26 3.62 -184.65 -0.67 -14.93 16 14 C -0.31 -8.40 11.03 -15.06 -0.17 -8.57 16 15 H 0.08 2.36 8.06 -52.48 -0.42 1.93 16 16 C -0.02 -0.61 5.50 -17.43 -0.10 -0.70 16 17 N -0.93 -28.48 13.70 55.49 0.76 -27.72 16 18 Si 1.06 25.95 25.50 -169.99 -4.34 21.62 16 19 H -0.29 -6.91 6.97 56.52 0.39 -6.51 16 20 H -0.28 -6.41 5.66 56.52 0.32 -6.09 16 21 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 22 C 0.09 1.77 5.44 -8.39 -0.05 1.73 16 23 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.08 0.87 7.39 -51.93 -0.38 0.48 16 26 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.08 0.72 8.14 -51.92 -0.42 0.29 16 28 H 0.09 1.08 7.85 -51.93 -0.41 0.67 16 29 H 0.41 6.46 8.75 -40.82 -0.36 6.10 16 30 H 0.11 1.64 7.45 -51.93 -0.39 1.26 16 31 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.26 7.91 8.73 -40.82 -0.36 7.56 16 34 H 0.06 1.10 7.02 -51.93 -0.36 0.74 16 35 H 0.05 1.16 6.22 -51.93 -0.32 0.84 16 LS Contribution 310.62 15.07 4.68 4.68 Total: -1.00 -32.47 310.62 -7.78 -40.25 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -4.42 Total: 2.60 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -1.42 Total: -0.32 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: 0.19 Total: -59.72 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -4.34 Total: 21.62 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -2.55 Total: 0.66 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.47 -7.78 -40.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031447370.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.403 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds