Wall clock time and date at job start Tue Mar 31 2020 05:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 110.78169 * 2 1 4 4 C 1.34774 * 119.99732 * 298.21030 * 3 2 1 5 5 O 1.21625 * 120.00196 * 0.02562 * 4 3 2 6 6 C 1.47272 * 119.99856 * 179.97438 * 4 3 2 7 7 C 1.35202 * 123.13845 * 179.73823 * 6 4 3 8 8 S 1.70948 * 108.82368 * 179.87470 * 7 6 4 9 9 C 1.70767 * 91.12826 * 0.32316 * 8 7 6 10 10 N 1.28646 * 110.56235 * 359.80862 * 9 8 7 11 11 C 1.55405 * 110.85058 * 123.29865 * 2 1 3 12 12 C 1.54914 * 101.66697 * 153.70010 * 11 2 1 13 13 N 1.47426 * 104.82992 * 323.07703 * 12 11 2 14 14 C 1.36936 * 125.64583 * 204.09666 * 13 12 11 15 15 H 1.07997 * 119.99931 * 180.02562 * 14 13 12 16 16 C 1.38819 * 120.00094 * 0.03301 * 14 13 12 17 17 N 1.31618 * 119.99956 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99883 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47088 * 60.00291 * 18 16 14 20 20 H 1.48494 * 109.47009 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.47347 * 300.00261 * 18 16 14 22 22 C 1.47018 * 108.70517 * 24.12623 * 13 12 11 23 23 H 1.08999 * 109.47083 * 181.78659 * 1 2 3 24 24 H 1.09002 * 109.47293 * 301.78668 * 1 2 3 25 25 H 1.09000 * 109.47062 * 61.78763 * 1 2 3 26 26 H 0.97000 * 119.99988 * 118.21694 * 3 2 1 27 27 H 1.08001 * 125.59277 * 359.97438 * 7 6 4 28 28 H 1.08005 * 124.72254 * 179.77503 * 9 8 7 29 29 H 1.09000 * 110.89538 * 35.62814 * 11 2 1 30 30 H 1.09000 * 111.06973 * 271.84658 * 11 2 1 31 31 H 1.08999 * 110.37121 * 204.23438 * 12 11 2 32 32 H 1.09001 * 110.45739 * 81.96050 * 12 11 2 33 33 H 0.96998 * 120.00119 * 179.97438 * 17 16 14 34 34 H 1.09002 * 109.88241 * 118.36067 * 22 13 12 35 35 H 1.09000 * 109.88049 * 239.37196 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0497 1.3697 0.0000 4 6 1.7730 2.1954 -1.0286 5 8 1.0913 1.8037 -1.9565 6 6 2.2950 3.5725 -1.0283 7 6 2.0611 4.4518 -2.0284 8 16 2.8305 5.9315 -1.6531 9 6 3.4276 5.2883 -0.1881 10 7 3.0483 4.0676 -0.0428 11 6 2.0831 -0.7973 1.2138 12 6 3.4656 -1.2541 0.6849 13 7 3.2438 -1.5535 -0.7415 14 6 4.0004 -2.4008 -1.5062 15 1 3.7552 -2.5533 -2.5468 16 6 5.0826 -3.0637 -0.9437 17 7 5.3811 -2.8784 0.3247 18 14 6.1153 -4.2190 -1.9870 19 1 6.7065 -3.4657 -3.1221 20 1 7.2019 -4.7977 -1.1568 21 1 5.2579 -5.3121 -2.5115 22 6 2.0760 -0.7913 -1.2072 23 1 -0.3633 -1.0272 0.0320 24 1 -0.3634 0.5413 0.8735 25 1 -0.3633 0.4858 -0.9056 26 1 2.5932 1.6822 0.7402 27 1 1.4818 4.2526 -2.9178 28 1 4.0390 5.8306 0.5179 29 1 1.4480 -1.6543 1.4381 30 1 2.1919 -0.1551 2.0878 31 1 3.7975 -2.1480 1.2130 32 1 4.1987 -0.4550 0.7952 33 1 6.1370 -3.3419 0.7179 34 1 2.3741 -0.1025 -1.9977 35 1 1.3121 -1.4740 -1.5792 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046181607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:40 Heat of formation + Delta-G solvation = 42.253410 kcal Electronic energy + Delta-G solvation = -20044.464329 eV Core-core repulsion = 16977.434708 eV Total energy + Delta-G solvation = -3067.029620 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.50658 -39.02494 -37.07192 -33.97780 -31.86924 -30.73862 -29.87993 -28.61818 -26.02438 -25.58639 -23.71293 -22.72023 -20.36559 -19.78316 -19.22877 -18.60429 -16.99086 -16.32234 -15.81413 -15.25707 -15.24355 -14.61266 -13.96873 -13.89003 -13.59271 -13.50694 -13.12366 -12.70924 -12.18087 -12.09636 -11.97399 -11.68326 -11.50364 -10.90255 -10.81229 -10.39066 -10.30276 -10.07746 -10.05076 -9.96148 -9.88494 -9.64062 -9.36993 -9.16393 -8.59991 -8.55873 -6.75607 -5.59809 -3.00101 0.42002 1.10136 1.44996 2.00049 3.44366 3.45811 3.48330 3.50082 3.58256 4.06319 4.54259 4.88174 5.07363 5.16375 5.26128 5.43387 5.55172 5.61235 5.76283 5.79842 6.07915 6.20633 6.27999 6.40410 6.50204 6.55720 6.74778 6.87099 7.15765 7.28851 7.53068 7.68111 7.86043 7.93861 8.40458 8.51040 9.28415 9.89186 10.54607 11.44475 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.020933 B = 0.004674 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.248638 B = 5988.864703 C = 6524.309514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.157 3.843 3 N -0.687 5.687 4 C 0.593 3.407 5 O -0.533 6.533 6 C 0.013 3.987 7 C -0.223 4.223 8 S 0.195 5.805 9 C -0.001 4.001 10 N -0.439 5.439 11 C -0.145 4.145 12 C 0.153 3.847 13 N -0.604 5.604 14 C -0.218 4.218 15 H 0.076 0.924 16 C -0.013 4.013 17 N -0.925 5.925 18 Si 0.914 3.086 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.137 3.863 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.406 0.594 27 H 0.190 0.810 28 H 0.204 0.796 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.011 0.989 33 H 0.251 0.749 34 H 0.033 0.967 35 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.733 17.881 1.112 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.071 3.929 3 N -0.337 5.337 4 C 0.375 3.625 5 O -0.411 6.411 6 C -0.122 4.122 7 C -0.365 4.365 8 S 0.449 5.551 9 C -0.301 4.301 10 N -0.153 5.153 11 C -0.184 4.184 12 C 0.028 3.972 13 N -0.330 5.330 14 C -0.346 4.346 15 H 0.094 0.906 16 C -0.208 4.208 17 N -0.574 5.574 18 Si 0.745 3.255 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.010 3.990 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.242 0.758 27 H 0.207 0.793 28 H 0.221 0.779 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.126 0.874 32 H 0.029 0.971 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.773 18.066 0.504 19.300 hybrid contribution 0.673 -1.183 -0.165 1.371 sum -6.100 16.882 0.339 17.954 Atomic orbital electron populations 1.22026 0.94155 1.02229 1.02286 1.21463 0.93002 0.80149 0.98300 1.45811 1.52735 1.12381 1.22748 1.16983 0.80107 0.82642 0.82739 1.90779 1.39267 1.75681 1.35334 1.20702 1.01841 0.97698 0.91968 1.26611 1.06934 0.97512 1.05447 1.82841 1.42505 1.12778 1.16944 1.28464 1.05445 0.94565 1.01619 1.66967 1.10554 1.11008 1.26772 1.23398 1.01228 0.98744 0.95067 1.21939 0.89406 1.00648 0.85230 1.44493 1.30864 1.50154 1.07489 1.19052 1.06268 1.16372 0.92922 0.90623 1.24755 0.98773 1.00770 0.96460 1.69768 1.30194 1.46449 1.10985 0.86149 0.79747 0.80628 0.78980 1.21335 1.21592 1.21170 1.21596 0.90379 0.93114 0.93905 0.91582 0.93086 0.91103 0.75807 0.79327 0.77898 0.90453 0.91823 0.87417 0.97102 0.93784 0.94868 0.95113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.42 37.15 0.31 -2.13 16 2 C 0.16 2.98 0.81 -129.85 -0.11 2.87 16 3 N -0.69 -12.29 5.15 -46.90 -0.24 -12.53 16 4 C 0.59 10.69 7.02 -12.59 -0.09 10.60 16 5 O -0.53 -10.72 13.67 5.26 0.07 -10.65 16 6 C 0.01 0.19 6.70 -84.52 -0.57 -0.37 16 7 C -0.22 -2.69 10.62 29.65 0.31 -2.38 16 8 S 0.20 1.58 22.97 -107.50 -2.47 -0.88 16 9 C 0.00 -0.01 12.17 51.43 0.63 0.62 16 10 N -0.44 -5.97 10.12 -12.36 -0.13 -6.10 16 11 C -0.15 -2.78 6.10 -24.44 -0.15 -2.93 16 12 C 0.15 3.77 5.87 -2.53 -0.01 3.75 16 13 N -0.60 -16.22 3.39 -170.07 -0.58 -16.79 16 14 C -0.22 -6.34 10.27 -15.06 -0.15 -6.49 16 15 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 16 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 17 N -0.92 -27.40 10.09 55.49 0.56 -26.84 16 18 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 C 0.14 3.18 6.12 -3.07 -0.02 3.17 16 23 H 0.07 1.03 8.13 -51.93 -0.42 0.60 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 1.24 6.45 -51.93 -0.34 0.90 16 26 H 0.41 6.83 7.99 -40.82 -0.33 6.51 16 27 H 0.19 2.11 8.03 -52.49 -0.42 1.69 16 28 H 0.20 1.16 8.06 -52.48 -0.42 0.74 16 29 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16 30 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 31 H 0.11 2.96 5.87 -51.93 -0.30 2.66 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.03 0.84 6.47 -51.93 -0.34 0.51 16 35 H 0.03 0.72 7.82 -51.93 -0.41 0.31 16 LS Contribution 303.20 15.07 4.57 4.57 Total: -1.00 -33.56 303.20 -7.38 -40.94 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.20 Total: 4.35 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 0.06 Total: 6.25 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: -0.38 Total: -62.26 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.07 Total: -10.65 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.47 Total: -0.88 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.56 -7.38 -40.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046181607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.193 kcal (2) G-P(sol) polarization free energy of solvation -33.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds